mRNA_H-elongata_contig67090.14318.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67090.14318.1
Unique NamemRNA_H-elongata_contig67090.14318.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67090.14318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67090contigH-elongata_contig67090:920..1271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931061.6619322-CDS-H-elongata_contig67090:921..11191622931061.6619322-CDS-H-elongata_contig67090:921..1119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67090 922..1119 -
1691679681.9974332-CDS-H-elongata_contig67090:921..11191691679681.9974332-CDS-H-elongata_contig67090:921..1119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67090 922..1119 -
1622931061.6785734-CDS-H-elongata_contig67090:1238..12711622931061.6785734-CDS-H-elongata_contig67090:1238..1271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67090 1239..1271 -
1691679682.0072424-CDS-H-elongata_contig67090:1238..12711691679682.0072424-CDS-H-elongata_contig67090:1238..1271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67090 1239..1271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67090.14318.1prot_H-elongata_contig67090.14318.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67090 922..1271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67090.14318.1

>prot_H-elongata_contig67090.14318.1 ID=prot_H-elongata_contig67090.14318.1|Name=mRNA_H-elongata_contig67090.14318.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
GGYNQGGDRSQQSYGGYSGQQGYGYNQQGGGGGGGGYGYGYGQQDQGYAA
SGYSQQGYGQGQQAAPVANRASSQTGS
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mRNA from alignment at H-elongata_contig67090:920..1271-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67090.14318.1 ID=mRNA_H-elongata_contig67090.14318.1|Name=mRNA_H-elongata_contig67090.14318.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=352bp|location=Sequence derived from alignment at H-elongata_contig67090:920..1271- (Himanthalia elongata Himel1 dioecious)
GGAGGTTACAACCAAGGAGGCGACCGTTCTCAGGTATGCCAAGATAACTT
CTAGTTTGTTATATTGTTGAATAAACGTCTCGGGTACTTATGGGGAATGT
AAACTCAATGTTAACCAGCTTGAACCGCTGCGATGATTCAAATATTTCGC
AGCAAAGCTACGGCGGCTACAGCGGACAGCAAGGCTATGGCTACAATCAA
CAGGGTGGCGGGGGCGGCGGGGGTGGTTATGGTTATGGCTACGGACAGCA
AGACCAAGGGTACGCTGCCAGTGGTTATAGTCAACAAGGTTACGGGCAGG
GTCAGCAGGCAGCGCCAGTAGCAAACCGCGCGTCTTCGCAGACAGGGTCC
GC
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Coding sequence (CDS) from alignment at H-elongata_contig67090:920..1271-

>mRNA_H-elongata_contig67090.14318.1 ID=mRNA_H-elongata_contig67090.14318.1|Name=mRNA_H-elongata_contig67090.14318.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig67090:920..1271- (Himanthalia elongata Himel1 dioecious)
GGAGGTTACAACCAAGGAGGCGACCGTTCTCAGGGAGGTTACAACCAAGG
AGGCGACCGTTCTCAGCAAAGCTACGGCGGCTACAGCGGACAGCAAGGCT
ATGGCTACAATCAACAGGGTGGCGGGGGCGGCGGGGGTGGTTATGGTTAT
GGCTACGGACAGCAAGACCAAGGGTACGCTGCCAGTGGTTATAGTCAACA
AGGTTACGGGCAGGGTCAGCAGGCAGCGCCAGTAGCAAACCGCGCGTCTT
CGCAGACAGGGTCCCAAAGCTACGGCGGCTACAGCGGACAGCAAGGCTAT
GGCTACAATCAACAGGGTGGCGGGGGCGGCGGGGGTGGTTATGGTTATGG
CTACGGACAGCAAGACCAAGGGTACGCTGCCAGTGGTTATAGTCAACAAG
GTTACGGGCAGGGTCAGCAGGCAGCGCCAGTAGCAAACCGCGCGTCTTCG
CAGACAGGGTCC
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