mRNA_H-elongata_contig6687.14288.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6687.14288.1
Unique NamemRNA_H-elongata_contig6687.14288.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6687.14288.1 vs. uniprot
Match: D7FRB8_ECTSI (Thaumatin-domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRB8_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.630e-10
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 FKYMGPQFSTQYFCGSTYYNTHQGPSSFDQCFMTCGGDDNIVCGGLWANSVYALG 165
            +KYM  Q+S   FC  TYY   +     D C M C GD+N++CGG W+NS+Y +G
Sbjct:  286 YKYMALQYSQDCFCADTYYTAERDAIPTDTCNMPCKGDENVICGGAWSNSIYIVG 340
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BLAST of mRNA_H-elongata_contig6687.14288.1 vs. uniprot
Match: D3P9U3_DEFDS (WSC domain-containing protein n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) TaxID=639282 RepID=D3P9U3_DEFDS)

HSP 1 Score: 57.0 bits (136), Expect = 4.550e-8
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 FKYMGPQFSTQYFCGSTYYNTHQGPSSFDQCFMTCGGDDNIVCGGLWANSVY 156
            FKY G Q+STQ FCG++Y          + C M C GD N +CGG WANSVY
Sbjct:   85 FKYAGVQYSTQCFCGNSYGKY----GVANNCNMKCSGDQNQICGGTWANSVY 132
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BLAST of mRNA_H-elongata_contig6687.14288.1 vs. uniprot
Match: A0A0S3QUQ3_THET7 (WSC domain-containing protein n=1 Tax=Thermosulfidibacter takaii (strain DSM 17441 / JCM 13301 / NBRC 103674 / ABI70S6) TaxID=1298851 RepID=A0A0S3QUQ3_THET7)

HSP 1 Score: 54.7 bits (130), Expect = 2.960e-7
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 FKYMGPQFSTQYFCGSTYYNTHQGPSSFDQCFMTCGGDDNIVCGGLWANSVYA 159
            FKY G Q+S+  FCG++Y     GP++   C M C G+ N +CGG WANSVYA
Sbjct:  158 FKYAGVQYSSFCFCGNSY--GKYGPAN--NCNMRCSGNTNKICGGYWANSVYA 206
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BLAST of mRNA_H-elongata_contig6687.14288.1 vs. uniprot
Match: A0A177E7S8_9BACT (Uncharacterized protein n=1 Tax=Thermodesulfatator autotrophicus TaxID=1795632 RepID=A0A177E7S8_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 5.560e-7
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 FKYMGPQFSTQYFCGSTYYNTHQGPSSFDQCFMTCGGDDNIVCGGLWANSVY 156
            ++Y G Q+S+Q FCG++Y     GP+    C M C GD+N +CGG WANS+Y
Sbjct:  180 YRYAGVQYSSQCFCGNSY--GKYGPAI--NCNMKCTGDENQICGGNWANSIY 227
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BLAST of mRNA_H-elongata_contig6687.14288.1 vs. uniprot
Match: A0A179D652_9BACT (Uncharacterized protein n=1 Tax=Thermosulfurimonas dismutans TaxID=999894 RepID=A0A179D652_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 2.390e-5
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    1 FKYMGPQFSTQYFCGSTYYNTHQGPSSFDQCFMTCGGDDNIVCGGLWANSVYA 159
            ++Y G Q+ +Q FC + Y     GP++   C M C G+ N +CGG WANSVYA
Sbjct:  417 YRYAGVQYGSQCFCDNDY--GLFGPAN--NCNMKCSGNPNEICGGFWANSVYA 465
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BLAST of mRNA_H-elongata_contig6687.14288.1 vs. uniprot
Match: A0A3D4RR16_9GAMM (WSC domain-containing protein n=1 Tax=Chromatiaceae bacterium TaxID=2049432 RepID=A0A3D4RR16_9GAMM)

HSP 1 Score: 48.5 bits (114), Expect = 4.460e-5
Identity = 24/55 (43.64%), Postives = 28/55 (50.91%), Query Frame = 1 
Query:    1 FKYMGPQFSTQYFCGSTYYNTHQGPSSFDQCFMTCGGDDNIVCGGLWANSVYALG 165
            F Y   Q++   FCG  Y          D C M C G+D  +CGG WANSVYA G
Sbjct:   64 FDYAAVQYTDYCFCGDEYGKY----GVADNCDMPCAGNDQEICGGRWANSVYATG 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6687.14288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FRB8_ECTSI1.630e-1045.45Thaumatin-domain containing protein n=2 Tax=Ectoca... [more]
D3P9U3_DEFDS4.550e-851.92WSC domain-containing protein n=1 Tax=Deferribacte... [more]
A0A0S3QUQ3_THET72.960e-750.94WSC domain-containing protein n=1 Tax=Thermosulfid... [more]
A0A177E7S8_9BACT5.560e-748.08Uncharacterized protein n=1 Tax=Thermodesulfatator... [more]
A0A179D652_9BACT2.390e-545.28Uncharacterized protein n=1 Tax=Thermosulfurimonas... [more]
A0A3D4RR16_9GAMM4.460e-543.64WSC domain-containing protein n=1 Tax=Chromatiacea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6687contigH-elongata_contig6687:1323..1487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionWSC and thaumatin domain protein
Ec32 orthologEc-26_002560.1
Exons1
Model size165
Cds size156
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931058.5064912-UTR-H-elongata_contig6687:1322..13311622931058.5064912-UTR-H-elongata_contig6687:1322..1331Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6687 1323..1331 +
1691679680.7844665-UTR-H-elongata_contig6687:1322..13311691679680.7844665-UTR-H-elongata_contig6687:1322..1331Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6687 1323..1331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931058.5236158-CDS-H-elongata_contig6687:1331..14871622931058.5236158-CDS-H-elongata_contig6687:1331..1487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6687 1332..1487 +
1691679680.7963128-CDS-H-elongata_contig6687:1331..14871691679680.7963128-CDS-H-elongata_contig6687:1331..1487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6687 1332..1487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6687.14288.1prot_H-elongata_contig6687.14288.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6687 1332..1487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6687.14288.1

>prot_H-elongata_contig6687.14288.1 ID=prot_H-elongata_contig6687.14288.1|Name=mRNA_H-elongata_contig6687.14288.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MGPQFSTQYFCGSTYYNTHQGPSSFDQCFMTCGGDDNIVCGGLWANSVYA
LG
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mRNA from alignment at H-elongata_contig6687:1323..1487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6687.14288.1 ID=mRNA_H-elongata_contig6687.14288.1|Name=mRNA_H-elongata_contig6687.14288.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig6687:1323..1487+ (Himanthalia elongata Himel1 dioecious)
TTCAAGTACATGGGGCCTCAGTTTTCCACACAGTATTTCTGCGGCAGTAC
TTACTATAATACTCACCAGGGCCCTAGCTCCTTCGACCAATGCTTCATGA
CTTGCGGCGGAGACGATAACATTGTATGCGGTGGTCTCTGGGCAAACTCA
GTCTACGCTCTAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig6687:1323..1487+

>mRNA_H-elongata_contig6687.14288.1 ID=mRNA_H-elongata_contig6687.14288.1|Name=mRNA_H-elongata_contig6687.14288.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig6687:1323..1487+ (Himanthalia elongata Himel1 dioecious)
ATGGGGCCTCAGTTTTCCACACAGTATTTCTGCGGCAGTACTTACTATAA
TACTCACCAGGGCCCTAGCTCCTTCGACCAATGCTTCATGACTTGCGGCG
GAGACGATAACATTGTATGCGGTGGTCTCTGGGCAAACTCAGTCTACGCT
CTAGGGATGGGGCCTCAGTTTTCCACACAGTATTTCTGCGGCAGTACTTA
CTATAATACTCACCAGGGCCCTAGCTCCTTCGACCAATGCTTCATGACTT
GCGGCGGAGACGATAACATTGTATGCGGTGGTCTCTGGGCAAACTCAGTC
TACGCTCTAGGG
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