mRNA_H-elongata_contig66779.14280.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66779.14280.1
Unique NamemRNA_H-elongata_contig66779.14280.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66779.14280.1 vs. uniprot
Match: D8LTK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK7_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.850e-42
Identity = 75/81 (92.59%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:    7 FVQVMVKGEGLRVVKHNRAGGSQVRIIRYDPEMKALVWNSKRYMKKAGSANVPIMGIKRVGREGNTVSVTAAGRGTIGFEP 249
            F +VMVKGEGLRVVKHNR+GGSQ+RIIRYDPE+KALVWNSKRYMKKAGSANVPI+GIKRVGREGNTVSVTAAGRGTIGFEP
Sbjct:  378 FHKVMVKGEGLRVVKHNRSGGSQMRIIRYDPEIKALVWNSKRYMKKAGSANVPIVGIKRVGREGNTVSVTAAGRGTIGFEP 458
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BLAST of mRNA_H-elongata_contig66779.14280.1 vs. uniprot
Match: A0A6H5KD05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD05_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.610e-41
Identity = 75/81 (92.59%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:    7 FVQVMVKGEGLRVVKHNRAGGSQVRIIRYDPEMKALVWNSKRYMKKAGSANVPIMGIKRVGREGNTVSVTAAGRGTIGFEP 249
            F +VMVKGEGLRVVKHNR+GGSQ+RIIRYDPE+KALVWNSKRYMKKAGSANVPI+GIKRVGREGNTVSVTAAGRGTIGFEP
Sbjct:  494 FHKVMVKGEGLRVVKHNRSGGSQMRIIRYDPEIKALVWNSKRYMKKAGSANVPIVGIKRVGREGNTVSVTAAGRGTIGFEP 574
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66779.14280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTK7_ECTSI2.850e-4292.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD05_9PHAE1.610e-4192.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66779contigH-elongata_contig66779:573..1830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_003720.1
Exons2
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.6825984-CDS-H-elongata_contig66779:572..7171622931057.6825984-CDS-H-elongata_contig66779:572..717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66779 573..717 +
1691679680.475747-CDS-H-elongata_contig66779:572..7171691679680.475747-CDS-H-elongata_contig66779:572..717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66779 573..717 +
1622931057.6955297-CDS-H-elongata_contig66779:1726..18301622931057.6955297-CDS-H-elongata_contig66779:1726..1830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66779 1727..1830 +
1691679680.4841578-CDS-H-elongata_contig66779:1726..18301691679680.4841578-CDS-H-elongata_contig66779:1726..1830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66779 1727..1830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66779.14280.1prot_H-elongata_contig66779.14280.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66779 573..1830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66779.14280.1

>prot_H-elongata_contig66779.14280.1 ID=prot_H-elongata_contig66779.14280.1|Name=mRNA_H-elongata_contig66779.14280.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MPFVQVMVKGEGLRVVKHNRAGGSQVRIIRYDPEMKALVWNSKRYMKKAG
SANVPIMGIKRVGREGNTVSVTAAGRGTIGFEP
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mRNA from alignment at H-elongata_contig66779:573..1830+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66779.14280.1 ID=mRNA_H-elongata_contig66779.14280.1|Name=mRNA_H-elongata_contig66779.14280.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1258bp|location=Sequence derived from alignment at H-elongata_contig66779:573..1830+ (Himanthalia elongata Himel1 dioecious)
ATGCCCTTTGTTCAGGTGATGGTAAAAGGCGAAGGCCTGAGGGTAGTCAA
GCACAACCGAGCAGGGGGCTCCCAGGTCCGCATCATCCGCTACGATCCTG
AAATGAAGGCCTTGGTATGGAACAGCAAACGGTACATGAAGAAGGGTGAG
ACCTCGCTAAATCGCTCACTACGACAGTATTACTCTTCTTGTATTGGTAA
TGGTAATGGTACTGGTAATGGTATCGGTAGTGTTAATGGTACTGGTAATG
GTATCGGTAATGTTAATGGTACTGGTAATGGTATCGGTAATGTTAATGGT
ACTGGTAATGTTAATGGTACTGGTAATGGTACTGGTAATGGTACTGGTAA
TGGTATCGGTAATGTTAATGGTACTGGTAATGGTATCGGTAATGTTAATG
GTACTGGTAATGGTATCGGTAATGTTAATGGTACTGGTAATGTTAATGGT
AATGGTACTGGTACTGTTAATGGTACTGGTAATGGTATCGGTAATAGTAT
CGGTAATGGTATCGGTAATGGTAATGGTACTCCAGCAATGGCGGTTGAAG
AGATCTGAGGGTTTGTAGAACCACGGGCTTTACTCATAGGCGTTGGGGTG
CTGTGTGCCTCATGTCAGCCAGTGATTGAGTTTCAAGGTGAAGACCTTGT
CTCCGGATGCCACCCGAGGACGGGGAGGACATGAGATGAGATGAGAGCCG
GGTCACGTCCACCAGTCACCCTCTAGGGCGGGTTTACTGCTGGGAGTAGA
CCTGGATGTGCCCACACTTTTAAACAGGATTAGGGTTATCTATTCATCTA
TTAATCTATTATAAATATATATAGTGAATGATATGGCGTCACACTTGGCT
GCTGCTGCTGGTGTTACGTTAAATATTACGTCGAGCGACACCGTTTATTC
ATTCATGCGATCCAAGGGTAACCATTCCGCCAGGCAGGCAAAGGTTTTGG
TTAATGATAATGTTTTAAAGACTATCCTTTACTAAATGCAGTATATTATC
ATTAAAAGACTCACTGTGCAGCCGATACTTGATTTGTCTCACTTTGCTGT
CGTCGACTTCGACTGACTTACTTACTGACTTATCTTTCCGTGATATTTCC
GGGTTTTTGGGCGTTTGTCGTGTTTCGCTTCATGCTTGGGGGGATCGGGG
ACAGCCGGATCGGCGAACGTACCGATTATGGGTATCAAGCGGGTCGGTCG
CGAGGGCAACACCGTCTCCGTCACCGCAGCCGGCCGTGGTACTATAGGCT
TCGAGCCT
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Coding sequence (CDS) from alignment at H-elongata_contig66779:573..1830+

>mRNA_H-elongata_contig66779.14280.1 ID=mRNA_H-elongata_contig66779.14280.1|Name=mRNA_H-elongata_contig66779.14280.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig66779:573..1830+ (Himanthalia elongata Himel1 dioecious)
ATGCCCTTTGTTCAGGTGATGGTAAAAGGCGAAGGCCTGAGGGTAGTCAA
GCACAACCGAGCAGGGGGCTCCCAGGTCCGCATCATCCGCTACGATCCTG
AAATGAAGGCCTTGGTATGGAACAGCAAACGGTACATGAAGAAGGATGCC
CTTTGTTCAGGTGATGGTAAAAGGCGAAGGCCTGAGGGTAGTCAAGCACA
ACCGAGCAGGGGGCTCCCAGGTCCGCATCATCCGCTACGATCCTGAAATG
AAGGCCTTGGTATGGAACAGCAAACGGTACATGAAGAAGGCCGGATCGGC
GAACGTACCGATTATGGGTATCAAGCGGGTCGGTCGCGAGGGCAACACCG
TCTCCGTCACCGCAGCCGGCCGTGGTACTATAGGCTTCGAGCCTCCGGAT
CGGCGAACGTACCGATTATGGGTATCAAGCGGGTCGGTCGCGAGGGCAAC
ACCGTCTCCGTCACCGCAGCCGGCCGTGGTACTATAGGCTTCGAGCCT
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