prot_H-elongata_contig66549.14257.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig66549.14257.1
Unique Nameprot_H-elongata_contig66549.14257.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length88
Homology
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BLAST of mRNA_H-elongata_contig66549.14257.1 vs. uniprot
Match: D7FZ53_ECTSI (Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ53_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 7.840e-18
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 0 
Query:   16 RGEDGRESGEDTSSTSGGHGRDPQTGEGMWIDDEDEPLVLEKPKKIQKFCGKVVSDKMDKSITVLDCYRSY 86
            +GE G E  +    +SG + RDP TGEG+W+D+EDEPL LEKPKK+QKFCGKV+SD MDK+I V   Y  Y
Sbjct:   96 QGEGGGEGQQGEMGSSGRYARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKTIKVAVPYWYY 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66549.14257.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ53_ECTSI7.840e-1859.15Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=287... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66549contigH-elongata_contig66549:1385..2396 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66549.14257.1mRNA_H-elongata_contig66549.14257.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig66549 724..2616 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig66549.14257.1 ID=prot_H-elongata_contig66549.14257.1|Name=mRNA_H-elongata_contig66549.14257.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MCSASNRSKPTGDQPRGEDGRESGEDTSSTSGGHGRDPQTGEGMWIDDED
EPLVLEKPKKIQKFCGKVVSDKMDKSITVLDCYRSYF*
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