mRNA_H-elongata_contig66546.14256.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66546.14256.1
Unique NamemRNA_H-elongata_contig66546.14256.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66546.14256.1 vs. uniprot
Match: D7FJT1_ECTSI (Alpha-mannosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT1_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 4.090e-29
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 WVMHDEATAHYVGMIDQTHLGHTFLRRVFGEEALPRVAWQIDPFGHSATQASLLGAQVG 177
            WVMHDEA AHYVGM+DQTHLGH+FLR  FGEEALPRVAWQIDPFGHSATQASLLGAQ G
Sbjct:  119 WVMHDEAAAHYVGMVDQTHLGHSFLREEFGEEALPRVAWQIDPFGHSATQASLLGAQAG 177
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BLAST of mRNA_H-elongata_contig66546.14256.1 vs. uniprot
Match: I2CPA4_NANGC (Lysosomal alpha-mannosidase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPA4_NANGC)

HSP 1 Score: 100 bits (249), Expect = 1.340e-23
Identity = 46/59 (77.97%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 WVMHDEATAHYVGMIDQTHLGHTFLRRVFGEEALPRVAWQIDPFGHSATQASLLGAQVG 177
            W MHDEATAHYVGMIDQT LGH FL   FGE+ LPRV WQ+DPFGHSATQASLL   VG
Sbjct:  153 WSMHDEATAHYVGMIDQTTLGHRFLASTFGEKYLPRVGWQVDPFGHSATQASLLSGSVG 211
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BLAST of mRNA_H-elongata_contig66546.14256.1 vs. uniprot
Match: A0A7S1TQE3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQE3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.140e-20
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 WVMHDEATAHYVGMIDQTHLGHTFLRRVFGEEALPRVAWQIDPFGHSATQASLLGAQVG 177
            W MHDEAT HYVGM+DQT LGH FL++ FG    PRV WQ+DPFGHSATQASLL   +G
Sbjct:  105 WCMHDEATTHYVGMLDQTTLGHRFLKKEFG--FAPRVGWQLDPFGHSATQASLLTYDIG 161
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BLAST of mRNA_H-elongata_contig66546.14256.1 vs. uniprot
Match: A0A2P6TGY9_CHLSO (Alpha-mannosidase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TGY9_CHLSO)

HSP 1 Score: 92.4 bits (228), Expect = 1.830e-20
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 WVMHDEATAHYVGMIDQTHLGHTFLRRVFGEEALPRVAWQIDPFGHSATQASLLGAQVG 177
            +V HDEATAHYV MIDQT  GH+FL+R FG  A+PRV WQIDPFGHS+TQA LL AQVG
Sbjct:  136 YVQHDEATAHYVAMIDQTTRGHSFLKRTFG--AIPRVGWQIDPFGHSSTQAGLLSAQVG 192
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BLAST of mRNA_H-elongata_contig66546.14256.1 vs. uniprot
Match: A0A8J5HC42_ZINOF (Alpha-mann_mid domain-containing protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HC42_ZINOF)

HSP 1 Score: 90.5 bits (223), Expect = 8.660e-20
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 WVMHDEATAHYVGMIDQTHLGHTFLRRVFGEEALPRVAWQIDPFGHSATQASLLGAQVG 177
            W MHDEA  HY+ MIDQT LGH FL++ FG+  +PR+AWQIDPFGHSA QA LLGA+VG
Sbjct:  117 WCMHDEAAVHYIDMIDQTTLGHQFLKQEFGQ--VPRIAWQIDPFGHSAVQAYLLGAEVG 173
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BLAST of mRNA_H-elongata_contig66546.14256.1 vs. uniprot
Match: UPI001C4CBBBC (alpha-mannosidase At3g26720-like isoform X1 n=6 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4CBBBC)

HSP 1 Score: 90.5 bits (223), Expect = 8.690e-20
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 WVMHDEATAHYVGMIDQTHLGHTFLRRVFGEEALPRVAWQIDPFGHSATQASLLGAQVG 177
            W MHDEA  HY+ MIDQT LGH FL++ FG+  +PR+AWQIDPFGHSA QA LLGA+VG
Sbjct:  137 WCMHDEAAVHYIDMIDQTTLGHQFLKQEFGQ--VPRIAWQIDPFGHSAVQAYLLGAEVG 193
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BLAST of mRNA_H-elongata_contig66546.14256.1 vs. uniprot
Match: A0A2P6V5Q6_9CHLO (Alpha-mannosidase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V5Q6_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 1.190e-19
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 WVMHDEATAHYVGMIDQTHLGHTFLRRVFGEEALPRVAWQIDPFGHSATQASLLGAQVG 177
            +V HDEATAHYV MIDQT  GH FLRR FG    PRV WQIDPFGHS+TQA LL AQVG
Sbjct:  139 YVQHDEATAHYVAMIDQTTRGHEFLRRTFG--VAPRVGWQIDPFGHSSTQAGLLSAQVG 195
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BLAST of mRNA_H-elongata_contig66546.14256.1 vs. uniprot
Match: A0A2P2MM39_RHIMU (Alpha-mannosidase-like n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MM39_RHIMU)

HSP 1 Score: 82.8 bits (203), Expect = 1.320e-19
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    7 MHDEATAHYVGMIDQTHLGHTFLRRVFGEEALPRVAWQIDPFGHSATQASLLGAQV 174
            MHDEAT HY+ MIDQT LGH F++  FG+  LPRV WQIDPFGHS  QA LLGA+V
Sbjct:    3 MHDEATVHYIDMIDQTTLGHKFIKDEFGQ--LPRVGWQIDPFGHSTVQAYLLGAEV 56
[Close]
BLAST of mRNA_H-elongata_contig66546.14256.1 vs. uniprot
Match: A0A803LR42_CHEQI (Glyco_hydro_38N domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LR42_CHEQI)

HSP 1 Score: 85.5 bits (210), Expect = 1.340e-19
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    7 MHDEATAHYVGMIDQTHLGHTFLRRVFGEEALPRVAWQIDPFGHSATQASLLGAQVG 177
            MHDEAT HY+ +IDQT LGH F++  FG+  +PRV WQIDPFGHSA QA LLGA+VG
Sbjct:    3 MHDEATTHYIDLIDQTTLGHQFIKNEFGQ--IPRVGWQIDPFGHSAVQAYLLGAEVG 57
[Close]
BLAST of mRNA_H-elongata_contig66546.14256.1 vs. uniprot
Match: A0A7S1NRS5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NRS5_9EUGL)

HSP 1 Score: 86.7 bits (213), Expect = 2.860e-19
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 WVMHDEATAHYVGMIDQTHLGHTFLRRVFGEEALPRVAWQIDPFGHSATQASLLGAQVG 177
            W MHDEA AHY+ M+DQT  GH FL + FG  A+PRV WQ+DPFGHSATQA+LL A++G
Sbjct:  136 WCMHDEAAAHYIDMVDQTTYGHRFLLQEFG--AVPRVGWQLDPFGHSATQAALLSAEMG 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66546.14256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJT1_ECTSI4.090e-2989.83Alpha-mannosidase n=1 Tax=Ectocarpus siliculosus T... [more]
I2CPA4_NANGC1.340e-2377.97Lysosomal alpha-mannosidase (Fragment) n=1 Tax=Nan... [more]
A0A7S1TQE3_9STRA1.140e-2069.49Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A2P6TGY9_CHLSO1.830e-2074.58Alpha-mannosidase n=1 Tax=Chlorella sorokiniana Ta... [more]
A0A8J5HC42_ZINOF8.660e-2069.49Alpha-mann_mid domain-containing protein n=2 Tax=Z... [more]
UPI001C4CBBBC8.690e-2069.49alpha-mannosidase At3g26720-like isoform X1 n=6 Ta... [more]
A0A2P6V5Q6_9CHLO1.190e-1974.58Alpha-mannosidase n=1 Tax=Micractinium conductrix ... [more]
A0A2P2MM39_RHIMU1.320e-1969.64Alpha-mannosidase-like n=1 Tax=Rhizophora mucronat... [more]
A0A803LR42_CHEQI1.340e-1968.42Glyco_hydro_38N domain-containing protein n=1 Tax=... [more]
A0A7S1NRS5_9EUGL2.860e-1966.10Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66546contigH-elongata_contig66546:214..390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.1e-22
Seed eggNOG ortholog2880.D7FJT1
KEGG koko:K01191,ko:K12311
KEGG ReactionR08717,R08718
KEGG Pathwayko00511,ko04142,map00511,map04142
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0005575,GO:0005576,GO:0005615,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005774,GO:0005775,GO:0005975,GO:0005996,GO:0006013,GO:0006464,GO:0006517,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009100,GO:0009311,GO:0009313,GO:0009505,GO:0009987,GO:0012505,GO:0015923,GO:0016020,GO:0016052,GO:0016192,GO:0016787,GO:0016798,GO:0019318,GO:0019538,GO:0030141,GO:0030312,GO:0031090,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0035578,GO:0036211,GO:0036230,GO:0042119,GO:0042582,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048046,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0071704,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:1901135,GO:1901564,GO:1901575
EggNOG free text desc.mannose metabolic process
EggNOG OGsKOG1959@1,KOG1959@2759
EC3.2.1.24
COG Functional cat.G
CAZyGH38
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size171
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931055.1969972-UTR-H-elongata_contig66546:213..2191622931055.1969972-UTR-H-elongata_contig66546:213..219Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66546 214..219 +
1691679679.5624917-UTR-H-elongata_contig66546:213..2191691679679.5624917-UTR-H-elongata_contig66546:213..219Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66546 214..219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931055.219251-CDS-H-elongata_contig66546:219..3901622931055.219251-CDS-H-elongata_contig66546:219..390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66546 220..390 +
1691679679.5772815-CDS-H-elongata_contig66546:219..3901691679679.5772815-CDS-H-elongata_contig66546:219..390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66546 220..390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66546.14256.1prot_H-elongata_contig66546.14256.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66546 220..390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66546.14256.1

>prot_H-elongata_contig66546.14256.1 ID=prot_H-elongata_contig66546.14256.1|Name=mRNA_H-elongata_contig66546.14256.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MHDEATAHYVGMIDQTHLGHTFLRRVFGEEALPRVAWQIDPFGHSATQAS
LLGAQVG
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mRNA from alignment at H-elongata_contig66546:214..390+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66546.14256.1 ID=mRNA_H-elongata_contig66546.14256.1|Name=mRNA_H-elongata_contig66546.14256.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig66546:214..390+ (Himanthalia elongata Himel1 dioecious)
TGGGTCATGCACGACGAGGCTACCGCGCACTACGTGGGCATGATCGACCA
GACCCACCTCGGGCACACCTTCTTGCGCCGAGTGTTCGGTGAGGAGGCAT
TACCCCGGGTGGCTTGGCAGATCGATCCCTTCGGGCACTCGGCGACGCAG
GCCTCGCTGCTGGGAGCGCAGGTGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig66546:214..390+

>mRNA_H-elongata_contig66546.14256.1 ID=mRNA_H-elongata_contig66546.14256.1|Name=mRNA_H-elongata_contig66546.14256.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig66546:214..390+ (Himanthalia elongata Himel1 dioecious)
ATGCACGACGAGGCTACCGCGCACTACGTGGGCATGATCGACCAGACCCA
CCTCGGGCACACCTTCTTGCGCCGAGTGTTCGGTGAGGAGGCATTACCCC
GGGTGGCTTGGCAGATCGATCCCTTCGGGCACTCGGCGACGCAGGCCTCG
CTGCTGGGAGCGCAGGTGGGTATGCACGACGAGGCTACCGCGCACTACGT
GGGCATGATCGACCAGACCCACCTCGGGCACACCTTCTTGCGCCGAGTGT
TCGGTGAGGAGGCATTACCCCGGGTGGCTTGGCAGATCGATCCCTTCGGG
CACTCGGCGACGCAGGCCTCGCTGCTGGGAGCGCAGGTGGGT
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