prot_H-elongata_contig66516.14249.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig66516.14249.1
Unique Nameprot_H-elongata_contig66516.14249.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length175
Homology
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BLAST of mRNA_H-elongata_contig66516.14249.1 vs. uniprot
Match: A0A6H5K9I9_9PHAE (MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I9_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 5.730e-49
Identity = 77/101 (76.24%), Postives = 91/101 (90.10%), Query Frame = 0 
Query:    9 GHSSLKVINSEVHHLGYYNTEAYGVTYKVRGFCKDLSNEHIFETVNVRGDIRFSNLHNNHFGMYSYGHQDGLWEYNLMHNNNEYGFDPHDDSDNLRIHNNV 109
            G +   +INSEVHHLG+Y TEAYG+T+KVRGFC DLSNE +F+ VNVRGDIRFS++H+N+FGMY+YGHQDGLWEYNLMH N +YGFDPHDDSDNLRIHNN+
Sbjct:  198 GEARFDIINSEVHHLGHYGTEAYGITWKVRGFCVDLSNEDLFDRVNVRGDIRFSDIHHNYFGMYTYGHQDGLWEYNLMHENAKYGFDPHDDSDNLRIHNNI 298
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BLAST of mRNA_H-elongata_contig66516.14249.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.210e-40
Identity = 69/101 (68.32%), Postives = 83/101 (82.18%), Query Frame = 0 
Query:    9 GHSSLKVINSEVHHLGYYNTEAYGVTYKVRGFCKDLSNEHIFETVNVRGDIRFSNLHNNHFGMYSYGHQDGLWEYNLMHNNNEYGFDPHDDSDNLRIHNNV 109
            G + L +INS+V +LGY   E+YG+TYKVRG+C D SN  +F+ VNVRGDIRFS++H+N FG YSYGHQDGLWEYN M N+  YGFDPHDDSDNLRIHNN+
Sbjct:  194 GEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQYSYGHQDGLWEYNTMRNSGYYGFDPHDDSDNLRIHNNI 294
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BLAST of mRNA_H-elongata_contig66516.14249.1 vs. uniprot
Match: D7FZF8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF8_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 9.190e-35
Identity = 61/100 (61.00%), Postives = 82/100 (82.00%), Query Frame = 0 
Query:    9 GHSSLKVINSEVHHLGYYNTEAYGVTYKVRGFCKDLSNEHIFETVNVRGDIRFSNLHNNHFGMYSYGHQDGLWEYNLMHNNNEYGFDPHDDSDNLRIHNN 108
            G + + +I+SEV+HLG+Y++E+YG+ YKVRGFCKDLSN  +F++V+V GDI  S++H+N+FG YSYGHQ G W +N MH+N  YGFDPHDDSD + IHNN
Sbjct:  217 GEARMDIIDSEVNHLGWYDSESYGIAYKVRGFCKDLSNPELFDSVSVTGDILGSDIHDNYFGHYSYGHQGGNWSHNKMHHNIGYGFDPHDDSDYITIHNN 316
[Close]
BLAST of mRNA_H-elongata_contig66516.14249.1 vs. uniprot
Match: D8LKL1_ECTSI (Mannuronan C-5 epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL1_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.980e-34
Identity = 60/88 (68.18%), Postives = 75/88 (85.23%), Query Frame = 0 
Query:   22 HLGYYNTEAYGVTYKVRGFCKDLSNEHIFETVNVRGDIRFSNLHNNHFGMYSYGHQDGLWEYNLMHNNNEYGFDPHDDSDNLRIHNNV 109
            H  +++ + Y    +VRGFC DLSNE +F+ VNVRG+IRFS++H+N+FGMY+YGHQDGLWEYNLMH N +YGFDPHDDSDNLRIHNN+
Sbjct:  140 HTRFFSLQTYA-RQQVRGFCVDLSNEDLFDRVNVRGNIRFSDIHHNYFGMYTYGHQDGLWEYNLMHENAKYGFDPHDDSDNLRIHNNI 226
[Close]
BLAST of mRNA_H-elongata_contig66516.14249.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 3.670e-34
Identity = 58/98 (59.18%), Postives = 80/98 (81.63%), Query Frame = 0 
Query:    8 DGHSSLKVINSEVHHLGYYNTEAYGVTYKVRGFCKDLSNEHIFETVNVRGDIRFSNLHNNHFGMYSYGHQDGLWEYNLMHNNNEYGFDPHDDSDNLRI 105
            +G   + +INSE+ ++G+++ E+YG+T+KVRGFCKDLSN  +FET NV GDI+ SN+H+ ++GMYSYGHQ G+W  N MH+N++YGFDPHDDSD L I
Sbjct:  115 EGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTI 212
[Close]
BLAST of mRNA_H-elongata_contig66516.14249.1 vs. uniprot
Match: D7FZF9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZF9_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.980e-32
Identity = 59/100 (59.00%), Postives = 77/100 (77.00%), Query Frame = 0 
Query:    9 GHSSLKVINSEVHHLGYYNTEAYGVTYKVRGFCKDLSNEHIFETVNVRGDIRFSNLHNNHFGMYSYGHQDGLWEYNLMHNNNEYGFDPHDDSDNLRIHNN 108
            G + + +I+SE++HLG+Y +E+YG+ YKVRGFC DLSN  +FETV V GDI  S++H+ +FG YSYGHQ G W YN +H+N  YGFDPHDDSD + I NN
Sbjct:  209 GEARMDIIDSEINHLGHYESESYGIAYKVRGFCNDLSNPELFETVGVTGDILGSHIHHLYFGHYSYGHQGGNWSYNTVHDNVGYGFDPHDDSDYVTISNN 308
[Close]
BLAST of mRNA_H-elongata_contig66516.14249.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 7.120e-32
Identity = 57/100 (57.00%), Postives = 78/100 (78.00%), Query Frame = 0 
Query:    9 GHSSLKVINSEVHHLGYYNTEAYGVTYKVRGFCKDLSNEHIFETVNVRGDIRFSNLHNNHFGMYSYGHQDGLWEYNLMHNNNEYGFDPHDDSDNLRIHNN 108
            G + + + +SE+ +LGY  +E+YG+T+KVRGFCKD SN  +F+ VNV G+I  S++H+NHFG+Y+YGH+ G W  N MH+N EYGFDPHDDSD L IH+N
Sbjct:   24 GEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGFDPHDDSDFLTIHDN 123
[Close]
BLAST of mRNA_H-elongata_contig66516.14249.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.630e-31
Identity = 55/95 (57.89%), Postives = 78/95 (82.11%), Query Frame = 0 
Query:    9 GHSSLKVINSEVHHLGYYNTEAYGVTYKVRGFCKDLSNEHIFETVNVRGDIRFSNLHNNHFGMYSYGHQDGLWEYNLMHNNNEYGFDPHDDSDNL 103
            G   + +INSE+ +LGY+++E+YG+T+KVRGFCKDLSN  +F+T NV G++  S++H+N++G YSYGHQ G+W  N MH+N++YGFDPHDDSD L
Sbjct:  225 GECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYL 319
[Close]
BLAST of mRNA_H-elongata_contig66516.14249.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 3.720e-31
Identity = 58/106 (54.72%), Postives = 83/106 (78.30%), Query Frame = 0 
Query:    9 GHSSLKVINSEVHHLGYYNTEAYGVTYKVRGFCKDLSNEHIFETVNVRGDIRFSNLHNNHFGMYSYGHQDGLWEYNLMHNNNEYGFDPHDDSDNL-----RIHNNV 109
            G   + +I+SE+ +LGY  +EAYG+T+KVRGFC DLSN  +F+ VNV GD++ S++H+ ++GMYS+GHQ G+W  NLMH+N++YGFDPHDDSD L     +++NNV
Sbjct:  148 GECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNV 253
[Close]
BLAST of mRNA_H-elongata_contig66516.14249.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 9.490e-31
Identity = 57/100 (57.00%), Postives = 78/100 (78.00%), Query Frame = 0 
Query:    9 GHSSLKVINSEVHHLGYYNTEAYGVTYKVRGFCKDLSNEHIFETVNVRGDIRFSNLHNNHFGMYSYGHQDGLWEYNLMHNNNEYGFDPHDDSDNLRIHNN 108
            G + + + +SE+ +LGY  +E+YG+T+KVRGFCKD SN  +F+ VNV G+I  S++H+NHFG+Y+YGH+ G W  N MH+N EYGFDPHDDSD L IH+N
Sbjct:  201 GEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGFDPHDDSDFLTIHDN 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66516.14249.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9I9_9PHAE5.730e-4976.24MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G1G1_ECTSI1.210e-4068.32Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FZF8_ECTSI9.190e-3561.00Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LKL1_ECTSI1.980e-3468.18Mannuronan C-5 epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FIU4_ECTSI3.670e-3459.18Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FZF9_ECTSI2.980e-3259.00Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
Q7XAJ9_9PHAE7.120e-3257.00Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
D8LRM4_ECTSI1.630e-3157.89Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7FRR8_ECTSI3.720e-3154.72Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAK2_9PHAE9.490e-3157.00Mannuronan C-5-epimerase n=2 Tax=Laminaria digitat... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 124..146
e-value: 0.73
score: 18.9
coord: 54..75
e-value: 7200.0
score: 1.1
coord: 100..122
e-value: 1.8
score: 17.5
coord: 10..37
e-value: 9700.0
score: 0.2
coord: 148..170
e-value: 1.6
score: 17.8
IPR039448Right handed beta helix domainPFAMPF13229Beta_helixcoord: 7..158
e-value: 4.4E-15
score: 55.9
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 5..173
e-value: 2.3E-49
score: 170.2
IPR022441Parallel beta-helix repeat-2TIGRFAMTIGR03804TIGR03804coord: 123..161
e-value: 7.6E-6
score: 23.5
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 9..163

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66516contigH-elongata_contig66516:369..2933 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66516.14249.1mRNA_H-elongata_contig66516.14249.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig66516 369..2933 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig66516.14249.1 ID=prot_H-elongata_contig66516.14249.1|Name=mRNA_H-elongata_contig66516.14249.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp
MSFPCHVDGHSSLKVINSEVHHLGYYNTEAYGVTYKVRGFCKDLSNEHIF
ETVNVRGDIRFSNLHNNHFGMYSYGHQDGLWEYNLMHNNNEYGFDPHDDS
DNLRIHNNVVYNNGNHGIIASKRCNDVSIQNNVISDNNNAGIMLHRSSDH
AIVRNNTISGSADACVAIFESMGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006626PbH1
IPR039448Beta_helix
IPR012334Pectin_lyas_fold
IPR022441Para_beta_helix_rpt-2
IPR011050Pectin_lyase_fold/virulence