mRNA_H-elongata_contig66317.14232.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66317.14232.1
Unique NamemRNA_H-elongata_contig66317.14232.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66317.14232.1 vs. uniprot
Match: D8LCT6_ECTSI (Vacuolar proton pump subunit B n=3 Tax=PX clade TaxID=569578 RepID=D8LCT6_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 1.930e-89
Identity = 142/152 (93.42%), Postives = 147/152 (96.71%), Query Frame = 1 
Query:    1 QIYLDRQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQGKDVLAMKAVVGEEALSLEDHLFLNFVEKFESKFVSQGPYQARSIFESLDLAWSLLRSFPKELLKKITKKQLESWYSRRAAAKQSGASDLATAGEKEAE 456
            QIYLDRQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQGKDV+AMKAVVGEEALSLEDHLFLNFVEKFE+KFVSQGPYQARSIFESLDLAWSLLRSFPKELLKKITKKQLE+WYSRRAAAKQ+GASDL +   KE E
Sbjct:  346 QIYLDRQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQGKDVMAMKAVVGEEALSLEDHLFLNFVEKFEAKFVSQGPYQARSIFESLDLAWSLLRSFPKELLKKITKKQLEAWYSRRAAAKQAGASDLVSGDAKEEE 497
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BLAST of mRNA_H-elongata_contig66317.14232.1 vs. uniprot
Match: B8C0L1_THAPS (Vacuolar proton pump subunit B n=21 Tax=Bacillariophyta TaxID=2836 RepID=B8C0L1_THAPS)

HSP 1 Score: 231 bits (588), Expect = 4.730e-71
Identity = 115/137 (83.94%), Postives = 129/137 (94.16%), Query Frame = 1 
Query:    1 QIYLDRQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQGKDVLAMKAVVGEEALSLEDHLFLNFVEKFESKFVSQGPYQARSIFESLDLAWSLLRSFPKELLKKITKKQLESWYSRRAAAKQ 411
            QIYLDRQLHTK IFPPINVLPSLSRLMKSAIGEGMTR+DH +VSNQLYA YA GKDVLAMKAVVGEEALS+EDHL+L+F+E+FESKFVSQGPYQAR+IFESLDLAWS+LR+FPKELLKKI KK L+ +Y+RRA AK+
Sbjct:  361 QIYLDRQLHTKGIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYASYAMGKDVLAMKAVVGEEALSMEDHLYLSFLERFESKFVSQGPYQARTIFESLDLAWSILRAFPKELLKKIPKKTLDQYYARRATAKE 497
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BLAST of mRNA_H-elongata_contig66317.14232.1 vs. uniprot
Match: K3X8G8_GLOUD (Vacuolar proton pump subunit B n=39 Tax=Oomycota TaxID=4762 RepID=K3X8G8_GLOUD)

HSP 1 Score: 218 bits (555), Expect = 3.050e-66
Identity = 108/139 (77.70%), Postives = 122/139 (87.77%), Query Frame = 1 
Query:    1 QIYLDRQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQGKDVLAMKAVVGEEALSLEDHLFLNFVEKFESKFVSQGPYQARSIFESLDLAWSLLRSFPKELLKKITKKQLESWYSRRAAAKQSG 417
            QIY+DRQLH ++IFPPINVLPSLSRLMKSAIGEGMTR+DH  VSNQLYA YA GKDV AMKAVVGEEALSLEDHL+L F + FE KF++QGPYQ+R IFESLDLAWSL RSFPKELLKKI KK L+ +Y+RR  A+Q+G
Sbjct:  355 QIYVDRQLHNRQIFPPINVLPSLSRLMKSAIGEGMTRDDHSAVSNQLYASYATGKDVQAMKAVVGEEALSLEDHLYLKFADNFEGKFIAQGPYQSRDIFESLDLAWSLFRSFPKELLKKIPKKHLDMYYARRTQARQNG 493
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BLAST of mRNA_H-elongata_contig66317.14232.1 vs. uniprot
Match: F0Y5A7_AURAN (Vacuolar proton pump subunit B n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0Y5A7_AURAN)

HSP 1 Score: 216 bits (549), Expect = 1.900e-65
Identity = 108/134 (80.60%), Postives = 121/134 (90.30%), Query Frame = 1 
Query:    1 QIYLDRQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQGKDVLAMKAVVGEEALSLEDHLFLNFVEKFESKFVSQGPYQARSIFESLDLAWSLLRSFPKELLKKITKKQLESWYSRRAA 402
            QIYLDRQ+H KEIFPPINVLPSLSRLMKSAIGEGMTR+DH  VSNQLYA YA G+DVLAMKAVVGEEALSL+DHL+L F+++FE KFV+QGPYQ R+IFESLDLAWSLLR+FPKELLKKI KK L   Y+R+AA
Sbjct:  340 QIYLDRQMHNKEIFPPINVLPSLSRLMKSAIGEGMTRDDHGAVSNQLYASYAMGRDVLAMKAVVGEEALSLDDHLYLAFLDRFEGKFVAQGPYQNRTIFESLDLAWSLLRAFPKELLKKIPKKTLAEHYARKAA 473
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BLAST of mRNA_H-elongata_contig66317.14232.1 vs. uniprot
Match: A0A7S2BPA0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BPA0_9STRA)

HSP 1 Score: 212 bits (540), Expect = 2.250e-65
Identity = 107/134 (79.85%), Postives = 119/134 (88.81%), Query Frame = 1 
Query:    1 QIYLDRQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQGKDVLAMKAVVGEEALSLEDHLFLNFVEKFESKFVSQGPYQARSIFESLDLAWSLLRSFPKELLKKITKKQLESWYSRRAA 402
            QIYLDR +  KEIFPPINVLPSLSRLMKSAIGEGMTR+DH +VSNQLYA YAQGKDVLAMKAVVGEEAL+ ED L+L F EKFESKF++QGPYQ R+IFESLDLAWSLLR+FPKELLKKI KK LE +Y ++ A
Sbjct:  224 QIYLDRMMQNKEIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYASYAQGKDVLAMKAVVGEEALTQEDMLYLKFTEKFESKFIAQGPYQNRTIFESLDLAWSLLRAFPKELLKKIPKKTLEVYYKKKMA 357
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BLAST of mRNA_H-elongata_contig66317.14232.1 vs. uniprot
Match: A0A7S2XY44_9STRA (Vacuolar proton pump subunit B n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY44_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.870e-64
Identity = 106/133 (79.70%), Postives = 121/133 (90.98%), Query Frame = 1 
Query:    1 QIYLDRQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQGKDVLAMKAVVGEEALSLEDHLFLNFVEKFESKFVSQGPYQARSIFESLDLAWSLLRSFPKELLKKITKKQLESWYSRRA 399
            QIYLDR LH KE+FPPINVLPSLSRLMKSAIG GMTR+DH  VSNQLYA YAQGKDVLAMKAVVGEEALSLEDHL+L FV+KFE+KF++QGPYQ+R++FESL+LAWSLLR+FPKELLKKI    L+ +Y+RRA
Sbjct:  348 QIYLDRALHNKEVFPPINVLPSLSRLMKSAIGVGMTRDDHDCVSNQLYASYAQGKDVLAMKAVVGEEALSLEDHLYLQFVDKFETKFIAQGPYQSRTVFESLELAWSLLRAFPKELLKKIPGNILDKYYARRA 480
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BLAST of mRNA_H-elongata_contig66317.14232.1 vs. uniprot
Match: W4FRS5_9STRA (Vacuolar proton pump subunit B n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FRS5_9STRA)

HSP 1 Score: 213 bits (541), Expect = 5.540e-64
Identity = 103/137 (75.18%), Postives = 122/137 (89.05%), Query Frame = 1 
Query:    1 QIYLDRQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQGKDVLAMKAVVGEEALSLEDHLFLNFVEKFESKFVSQGPYQARSIFESLDLAWSLLRSFPKELLKKITKKQLESWYSRRAAAKQ 411
            QIY+DRQLH ++IFPPINVLPSLSRLMKSAIG+GMTR+DH  VSNQLYA YA GKDV AMKAVVGEEALS+EDHL+L F +KFE+KF++QGPYQ+R IFESLDLAWSL R+FPKELLKKI KK L+++Y+RR   ++
Sbjct:  364 QIYVDRQLHNRQIFPPINVLPSLSRLMKSAIGDGMTRDDHSAVSNQLYASYATGKDVQAMKAVVGEEALSMEDHLYLKFTDKFEAKFIAQGPYQSRDIFESLDLAWSLFRAFPKELLKKIPKKHLDTFYARRTQVRE 500
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BLAST of mRNA_H-elongata_contig66317.14232.1 vs. uniprot
Match: A0A7S2P9L4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P9L4_9STRA)

HSP 1 Score: 200 bits (509), Expect = 5.930e-63
Identity = 95/113 (84.07%), Postives = 108/113 (95.58%), Query Frame = 1 
Query:    1 QIYLDRQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQGKDVLAMKAVVGEEALSLEDHLFLNFVEKFESKFVSQGPYQARSIFESLDLAWSLLRSFP 339
            QIYLDRQLHTK +FPPINVLPSLSRLMKSAIGEGMTR+DH +VSNQLYA YA GKDV+AMKAVVGEEALS+EDHL+L+F+E+FE KF++QGPYQARSIFESLDLAWS+LR+FP
Sbjct:   82 QIYLDRQLHTKGVFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYASYAMGKDVMAMKAVVGEEALSMEDHLYLSFLERFEGKFIAQGPYQARSIFESLDLAWSILRAFP 194
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BLAST of mRNA_H-elongata_contig66317.14232.1 vs. uniprot
Match: A0A7R9YNM8_DIALT (Vacuolar proton pump subunit B n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YNM8_DIALT)

HSP 1 Score: 205 bits (522), Expect = 2.830e-61
Identity = 99/131 (75.57%), Postives = 121/131 (92.37%), Query Frame = 1 
Query:    1 QIYLDRQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQGKDVLAMKAVVGEEALSLEDHLFLNFVEKFESKFVSQGPYQARSIFESLDLAWSLLRSFPKELLKKITKKQLESWYSR 393
            QIY+DRQLH ++I+PPINVLPSLSRLMKSAIGEGMTR+DH +VSNQ+YA YA GKDV+AMKAVVGEEALS EDHL+L F++KFESKFV+QGPY+ R+IF++LDLAWSLLR+FPKELLK+I +K L+ +Y+R
Sbjct:  369 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQMYANYAIGKDVMAMKAVVGEEALSSEDHLYLEFLDKFESKFVNQGPYENRTIFDTLDLAWSLLRTFPKELLKRIPEKVLKDYYAR 499
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BLAST of mRNA_H-elongata_contig66317.14232.1 vs. uniprot
Match: W7TUD0_9STRA (Vacuolar h+ atpase b subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUD0_9STRA)

HSP 1 Score: 206 bits (525), Expect = 4.000e-61
Identity = 103/135 (76.30%), Postives = 118/135 (87.41%), Query Frame = 1 
Query:    1 QIYLDRQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAMYAQGKDVLAMKAVVGEEALSLEDHLFLNFVEKFESKFVSQGPYQARSIFESLDLAWSLLRSFPKELLKKITKKQLESWYSRRAAA 405
            QIYLDR LH +EIFPPINVLPSLSRLMKSAIGEGMTR DH +VSNQLYA YA GKDV AMKAVVGEEALSLEDHL+L FV+KFE K+++QG    R++FESLDLAWSLLR FP++LLKKITK +L ++Y+RR AA
Sbjct:  421 QIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRNDHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTANRTVFESLDLAWSLLRIFPRDLLKKITKNELNTYYARRTAA 555
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66317.14232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCT6_ECTSI1.930e-8993.42Vacuolar proton pump subunit B n=3 Tax=PX clade Ta... [more]
B8C0L1_THAPS4.730e-7183.94Vacuolar proton pump subunit B n=21 Tax=Bacillario... [more]
K3X8G8_GLOUD3.050e-6677.70Vacuolar proton pump subunit B n=39 Tax=Oomycota T... [more]
F0Y5A7_AURAN1.900e-6580.60Vacuolar proton pump subunit B n=2 Tax=Pelagomonad... [more]
A0A7S2BPA0_9STRA2.250e-6579.85Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2XY44_9STRA1.870e-6479.70Vacuolar proton pump subunit B n=1 Tax=Fibrocapsa ... [more]
W4FRS5_9STRA5.540e-6475.18Vacuolar proton pump subunit B n=9 Tax=Aphanomyces... [more]
A0A7S2P9L4_9STRA5.930e-6384.07Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7R9YNM8_DIALT2.830e-6175.57Vacuolar proton pump subunit B n=2 Tax=Diacronema ... [more]
W7TUD0_9STRA4.000e-6176.30Vacuolar h+ atpase b subunit n=2 Tax=Monodopsidace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66317contigH-elongata_contig66317:1067..3191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score282.3
Seed ortholog evalue1.3e-73
Seed eggNOG ortholog2880.D8LCT6
Preferred nameATP6V1B1
KEGG koko:K02147
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0001503,GO:0001666,GO:0001678,GO:0001726,GO:0003008,GO:0003674,GO:0003779,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0005902,GO:0005903,GO:0005911,GO:0006355,GO:0006357,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006874,GO:0006875,GO:0006885,GO:0006914,GO:0006950,GO:0006996,GO:0007010,GO:0007015,GO:0007035,GO:0007154,GO:0007155,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007423,GO:0007588,GO:0007600,GO:0007605,GO:0008064,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008286,GO:0008324,GO:0009056,GO:0009268,GO:0009405,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009757,GO:0009790,GO:0009887,GO:0009889,GO:0009894,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010038,GO:0010182,GO:0010243,GO:0010255,GO:0010468,GO:0010494,GO:0010506,GO:0010556,GO:0010639,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016241,GO:0016323,GO:0016324,GO:0016328,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019725,GO:0019829,GO:0022603,GO:0022607,GO:0022610,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030029,GO:0030036,GO:0030054,GO:0030139,GO:0030641,GO:0030659,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030837,GO:0031090,GO:0031164,GO:0031224,GO:0031252,GO:0031323,GO:0031326,GO:0031329,GO:0031333,GO:0031410,GO:0031982,GO:0032271,GO:0032272,GO:0032501,GO:0032502,GO:0032535,GO:0032868,GO:0032869,GO:0032870,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033500,GO:0033572,GO:0034220,GO:0034284,GO:0034622,GO:0035770,GO:0036176,GO:0036293,GO:0036442,GO:0036464,GO:0042221,GO:0042470,GO:0042471,GO:0042472,GO:0042592,GO:0042593,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0042995,GO:0043067,GO:0043068,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043242,GO:0043244,GO:0043248,GO:0043254,GO:0043434,GO:0043492,GO:0043583,GO:0043933,GO:0044085,GO:0044087,GO:0044232,GO:0044237,GO:0044248,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0044877,GO:0045177,GO:0045184,GO:0045335,GO:0045851,GO:0046686,GO:0046961,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048731,GO:0048770,GO:0048839,GO:0048856,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050877,GO:0050896,GO:0050954,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051452,GO:0051453,GO:0051493,GO:0051494,GO:0051693,GO:0051704,GO:0051716,GO:0055044,GO:0055065,GO:0055067,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060142,GO:0060255,GO:0061572,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070482,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072503,GO:0072507,GO:0072512,GO:0080090,GO:0090066,GO:0090596,GO:0090662,GO:0097435,GO:0097708,GO:0098588,GO:0098590,GO:0098609,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0098858,GO:0098862,GO:0099131,GO:0099132,GO:0110053,GO:0120025,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901879,GO:1901880,GO:1902600,GO:1902903,GO:1902904,GO:1902906,GO:1903506,GO:1990816,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ATP hydrolysis coupled proton transport
EggNOG OGsCOG1156@1,KOG1351@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size459
Cds size459
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66317.14232.1prot_H-elongata_contig66317.14232.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66317 1067..3191 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931052.6728055-CDS-H-elongata_contig66317:1066..12251622931052.6728055-CDS-H-elongata_contig66317:1066..1225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66317 1067..1225 +
1691679678.6494195-CDS-H-elongata_contig66317:1066..12251691679678.6494195-CDS-H-elongata_contig66317:1066..1225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66317 1067..1225 +
1622931052.6930687-CDS-H-elongata_contig66317:2060..21831622931052.6930687-CDS-H-elongata_contig66317:2060..2183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66317 2061..2183 +
1691679678.6632352-CDS-H-elongata_contig66317:2060..21831691679678.6632352-CDS-H-elongata_contig66317:2060..2183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66317 2061..2183 +
1622931052.710073-CDS-H-elongata_contig66317:3014..31911622931052.710073-CDS-H-elongata_contig66317:3014..3191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66317 3015..3191 +
1691679678.6739285-CDS-H-elongata_contig66317:3014..31911691679678.6739285-CDS-H-elongata_contig66317:3014..3191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66317 3015..3191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66317.14232.1

>prot_H-elongata_contig66317.14232.1 ID=prot_H-elongata_contig66317.14232.1|Name=mRNA_H-elongata_contig66317.14232.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
QIYLDRQLHTKEIFPPINVLPSLSRLMKSAIGEGMTREDHWNVSNQLYAM
YAQGKDVLAMKAVVGEEALSLEDHLFLNFVEKFESKFVSQGPYQARSIFE
SLDLAWSLLRSFPKELLKKITKKQLESWYSRRAAAKQSGASDLATAGEKE
AE*
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mRNA from alignment at H-elongata_contig66317:1067..3191+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66317.14232.1 ID=mRNA_H-elongata_contig66317.14232.1|Name=mRNA_H-elongata_contig66317.14232.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2125bp|location=Sequence derived from alignment at H-elongata_contig66317:1067..3191+ (Himanthalia elongata Himel1 dioecious)
CAGATCTACCTGGATCGTCAGCTCCACACGAAGGAAATCTTCCCGCCCAT
CAACGTGCTGCCGTCGCTCTCTCGCCTGATGAAGTCGGCTATCGGAGAAG
GCATGACTCGCGAGGATCACTGGAATGTCTCTAACCAGCTGTACGCGATG
TACGCCCAGGTAAAACACTGCTTGTGTTAATATTAAAATTGAGTAGATCG
GACAGAGACGAAAGACACCCGCACGTGATGTGGCTTCGAAACGTCGGAAG
AGGAGGAGAAAGCCGCAAGGGTTTCCACCTTGGCGTAGGCGTTTGTGTTT
TGAGTGTGTATGCCTATTTCTTGTTGTGGTTGTAGGGGCGACAAGAAAAC
GAGGAACACGTTGTACTACCATAATCCCTTCTGAGTTCCCCCCGGGGCGG
GATTTTTTAAAAATTTTGAATCGACCCCCCGGGGGGAAATCCCGGAATCA
TGCGTTTTCGCCGAAAAAGAGGTGAAGGGAAGGATTTTATTTATTTAGTT
TTTAATAAAAATTATTGGGGGGGGGGAGAAACTCAGAGGGTATTACGGTA
ATCTAATGCTATCAATGATAAAAAAGTATTTTACTAGTGTCAAGAATAGC
TGAAGTCAGGCCTATCGCGGATTATGTTCCCCCTGCCCCCCCCTCAGCTA
CTGGTGTTCCGAGTCTTCCAACGAAAGCAGGGAAGGGGATGTTGCTTTGA
ATATTTCCCCGAATGCTTGAGTACTATTATGACCTTAGCACAAATGCTGC
TACCATGATCTATTTAAACGTTTATCCGCTAGGGGAATGTTTTGATATCG
CCCCCCTTCTTCATAACACCGGTGATTCATTGGAACACCCCCCCCCATTT
TTGTTGGGGTCGAATAATTTGCTACGTTCCCCCATCCATCACCCGACTGT
GGTTATTGCCGATATGGATAAATTCCCGCGATCCCGCAATCGCAGTCGCC
GAAACGCTTTGCCCTCCCATCCCCTCCCGACTCCATCTGCGCAGGGGAAG
GACGTGCTGGCCATGAAAGCTGTGGTGGGTGAGGAGGCCCTGAGCCTGGA
GGACCACCTCTTTCTCAACTTTGTCGAGAAGTTCGAGTCCAAGTTCGTGT
CGCAGGGGCCCTACCAGGTATGACCTAATGAAAAAAAAAAAATCGGACCA
GAGGGTCATTAGATCGAGAAACGTAATATATATGATTATAACAGGTCGTG
GGCTATTTTAGGTTGGTTATGATTGTGACAGGACGTGGTATAGAAGGGGG
TGTAAAGGGTTACTACCCCCGCCCCCACCTCTAAGTCCCTTTTCGGTACT
TAAGAGCATTATAGTTGGTAACGGTATGGTAATGCCCGCTGAATGTACAA
CATTTGGTTATATCCGGTGTGGTCCGATTTGGCGTAGTAAGCGCAAGGAC
GATGACTAAAAAGGGTTAGTATCATCCTTGAAAAATGCCGCCTGGCCCTG
CGAGCAGACGGTGTATTGCTCCGTACCAGCATTGTTGGGATGCTTGGTCC
ATGCCTGTTAGAGGTAGAGATGTGAATGTAGAGAGAGTTGTCCTCTGAAT
AATGTTATATAATTGTGTAATATGGTTGCTTTTGTGTAGGAGAGGGCTTA
TATCGTTGTTGTTTCTGTCACAGAAAGGTTTACAGTCCCATCGCACGCTG
TAGACTAGAATAGTTTACAGTCCCGTGAAACGCGTTTTCGCTATTTTTGG
CGCAAGTACTGTTTTTTTTTCATGTAATGTAATGTTTGTGTGCTCGTCGG
TATGTACATTCAGACAGTGGTGAGAAAACCCAATCTACTCAATCTCGACA
ACGACACGTAAGTGATTTCCGTTTTGTTTGTATTTATCGCTCGTTGATCT
TGACCCTCAACCGTTTTCAATTCCCCCGCTCCGATCGCGTAACACTGCCT
TGATTTCCAATGAAACCCCAACTTCCTACGCACGTTCGTCACACACAGGC
GCGGTCAATCTTCGAGTCGCTTGACCTCGCGTGGTCCCTTCTGCGGTCGT
TCCCCAAGGAACTGCTAAAGAAAATCACCAAGAAGCAGCTGGAGAGTTGG
TACTCCCGACGCGCTGCGGCGAAGCAGTCCGGCGCGTCCGACTTGGCGAC
CGCAGGGGAAAAGGAGGCAGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig66317:1067..3191+

>mRNA_H-elongata_contig66317.14232.1 ID=mRNA_H-elongata_contig66317.14232.1|Name=mRNA_H-elongata_contig66317.14232.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig66317:1067..3191+ (Himanthalia elongata Himel1 dioecious)
CAGATCTACCTGGATCGTCAGCTCCACACGAAGGAAATCTTCCCGCCCAT
CAACGTGCTGCCGTCGCTCTCTCGCCTGATGAAGTCGGCTATCGGAGAAG
GCATGACTCGCGAGGATCACTGGAATGTCTCTAACCAGCTGTACGCGATG
TACGCCCAGCAGATCTACCTGGATCGTCAGCTCCACACGAAGGAAATCTT
CCCGCCCATCAACGTGCTGCCGTCGCTCTCTCGCCTGATGAAGTCGGCTA
TCGGAGAAGGCATGACTCGCGAGGATCACTGGAATGTCTCTAACCAGCTG
TACGCGATGTACGCCCAGGGGAAGGACGTGCTGGCCATGAAAGCTGTGGT
GGGTGAGGAGGCCCTGAGCCTGGAGGACCACCTCTTTCTCAACTTTGTCG
AGAAGTTCGAGTCCAAGTTCGTGTCGCAGGGGCCCTACCAGGGGAAGGAC
GTGCTGGCCATGAAAGCTGTGGTGGGTGAGGAGGCCCTGAGCCTGGAGGA
CCACCTCTTTCTCAACTTTGTCGAGAAGTTCGAGTCCAAGTTCGTGTCGC
AGGGGCCCTACCAGGCGCGGTCAATCTTCGAGTCGCTTGACCTCGCGTGG
TCCCTTCTGCGGTCGTTCCCCAAGGAACTGCTAAAGAAAATCACCAAGAA
GCAGCTGGAGAGTTGGTACTCCCGACGCGCTGCGGCGAAGCAGTCCGGCG
CGTCCGACTTGGCGACCGCAGGGGAAAAGGAGGCAGAGTAGGCGCGGTCA
ATCTTCGAGTCGCTTGACCTCGCGTGGTCCCTTCTGCGGTCGTTCCCCAA
GGAACTGCTAAAGAAAATCACCAAGAAGCAGCTGGAGAGTTGGTACTCCC
GACGCGCTGCGGCGAAGCAGTCCGGCGCGTCCGACTTGGCGACCGCAGGG
GAAAAGGAGGCAGAGTAG
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