mRNA_H-elongata_contig66266.14225.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66266.14225.1 vs. uniprot
Match: A0A6H5KT00_9PHAE (ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT00_9PHAE) HSP 1 Score: 189 bits (479), Expect = 1.780e-52 Identity = 110/178 (61.80%), Postives = 126/178 (70.79%), Query Frame = 1
Query: 4 GSVTAIMGPSGAGKTSLLNVLAGRHREMSGVSGGLSGCGRGGRVAGAVRVSGVEVGPAKVRGLSAYVAQEDVLPETMTCFEHLMFHAELRVKWGRCFNRA-----------------DRKRRVM---RELHIENIRDSRIGGELARGISGGERRRLSISTELLTRPGLLFLDEPTTGL 477
GSVTAIMGPSGAGKT+LLNVLAGR R + + GGRV GAVR++G V A+VRG+S YV QEDVLPET+TCFEHLMFHAELR+ R DRK RV+ REL +E++RDSRIGG L+RGISGGE+RRLSI+TELLT PGLLFLDEPTTGL
Sbjct: 1306 GSVTAIMGPSGAGKTTLLNVLAGRMRRLGNKN-------NGGRVTGAVRINGRAVTAAEVRGVSGYVTQEDVLPETLTCFEHLMFHAELRMSTPEAVTRGCGXXXXXXRRXXRASREDRKHRVLQVLRELRLEDVRDSRIGGGLSRGISGGEKRRLSIATELLTCPGLLFLDEPTTGL 1476
BLAST of mRNA_H-elongata_contig66266.14225.1 vs. uniprot
Match: D8LNV5_ECTSI (ATP-binding cassette superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV5_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.580e-51 Identity = 110/178 (61.80%), Postives = 128/178 (71.91%), Query Frame = 1
Query: 4 GSVTAIMGPSGAGKTSLLNVLAGRHREMSGVSGGLSGCGRGGRVAGAVRVSGVEVGPAKVRGLSAYVAQEDVLPETMTCFEHLMFHAELRVKW-----GRC------------FNRADRKRRVM---RELHIENIRDSRIGGELARGISGGERRRLSISTELLTRPGLLFLDEPTTGL 477
GSVTAIMGPSGAGKT+LLNVLAGR + + GGRV GAVR++G V A+VRG+S YV QEDVLPET+TCFEHLMFHAELR+ G C ++ DRK RV+ REL +E++RDSRIGG L+RGISGGE+RRLSI+TELLT PGLLFLDEPTTGL
Sbjct: 1399 GSVTAIMGPSGAGKTTLLNVLAGRMHRLGKKN-------NGGRVTGAVRINGRAVTAAEVRGVSGYVTQEDVLPETLTCFEHLMFHAELRMSTPEGVTGACGCGXXXXXXXHRASQEDRKHRVLQVLRELRLEDVRDSRIGGGLSRGISGGEKRRLSIATELLTCPGLLFLDEPTTGL 1569
BLAST of mRNA_H-elongata_contig66266.14225.1 vs. uniprot
Match: A0A6H5KKD9_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKD9_9PHAE) HSP 1 Score: 182 bits (463), Expect = 2.570e-50 Identity = 105/165 (63.64%), Postives = 126/165 (76.36%), Query Frame = 1
Query: 4 GSVTAIMGPSGAGKTSLLNVLAGRHREMSGVSGGLSGCGRGGR--VAGAVRVSGVEVGPAKVRGLSAYVAQEDVLPETMTCFEHLMFHAELRVKWGRCF-NRADRKRRVMRELHIENIRDSRIGGELARGISGGERRRLSISTELLTRPGLLFLDEPTTGLGKTS 489
G+VTAIMGPSGAGKTSLLN LAGR +++ + SG GR R + GAVR++G+ GPA+VR LSAYV QEDVLPET+TC+EHLMFHA+LR+ R DR V+ +L + IRDSRIGG L+RGISGGE+RRLSI TELLTRP LLFLDEPTTGL ++
Sbjct: 1462 GTVTAIMGPSGAGKTSLLNALAGRLQDVQREA---SGGGRRRRPGLTGAVRLNGLAAGPAEVRALSAYVTQEDVLPETLTCYEHLMFHAQLRLPGHTTLARRHDRVAEVLEQLGLAGIRDSRIGGGLSRGISGGEKRRLSIGTELLTRPALLFLDEPTTGLDSST 1623
BLAST of mRNA_H-elongata_contig66266.14225.1 vs. uniprot
Match: A0A835Z9G6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G6_9STRA) HSP 1 Score: 139 bits (349), Expect = 1.290e-35 Identity = 83/157 (52.87%), Postives = 102/157 (64.97%), Query Frame = 1
Query: 10 VTAIMGPSGAGKTSLLNVLAGRHREMSGVSGGLSGCGRGGRVAGAVRVSGVEVGPAKVRGLSAYVAQEDVLPETMTCFEHLMFHAELRVKWG-RCFNRADRKRRVMRELHIENIRDSRIGGELARGISGGERRRLSISTELLTRPGLLFLDEPTTGL 477
V +MG SGAGKT+LL +LAGR G + GGR +GA+ ++G PA VR ++ YVAQ+DVLP +T EHL FHA LR+ RA+R V+ EL + + DSRIG RGISGGERRRLSI+ ELL+RP LLFLDEPTTGL
Sbjct: 304 VVGLMGASGAGKTTLLELLAGRKHGCGGAA-----AAEGGRASGAIALNGAAAAPAHVRAIAGYVAQDDVLPAALTVCEHLAFHAALRLPPELAAAARAERVLEVVGELGLGLVADSRIGDSDRRGISGGERRRLSIAAELLSRPPLLFLDEPTTGL 455
BLAST of mRNA_H-elongata_contig66266.14225.1 vs. uniprot
Match: C1E9X4_MICCC (ATP-binding cassette superfamily (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E9X4_MICCC) HSP 1 Score: 129 bits (324), Expect = 1.700e-34 Identity = 79/161 (49.07%), Postives = 103/161 (63.98%), Query Frame = 1
Query: 16 AIMGPSGAGKTSLLNVLAGRHREMSGVSGGLSGCGRGGRVAGAVRVSGVEVGPAKVRGLSAYVAQEDVLPETMTCFEHLMFHAELRVKWGRCFNRADRKR---RVMRELHIENIRDSRIGGELARGISGGERRRLSISTELLTRPGLLFLDEPTTGLGKTS 489
AI+GPSGAGKT+L+++LAGR G VAG +RV+G + A++R +S YV Q+DVLP T T +EHL FH LR+ RA K + M++L I I S IG E RG+SGGE+RR+SI+TELLT PG++FLDEPTTGL T+
Sbjct: 18 AILGPSGAGKTTLIDILAGRPSV-------------GHEVAGELRVNGRAMTSAEMRAVSGYVTQDDVLPGTSTVWEHLTFHGALRLPGN--VERARLKAVIWQTMQDLGISKIAHSFIGDEFTRGLSGGEKRRVSIATELLTSPGIMFLDEPTTGLDSTN 163
BLAST of mRNA_H-elongata_contig66266.14225.1 vs. uniprot
Match: A0A7S0KCW1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KCW1_9CHLO) HSP 1 Score: 134 bits (337), Expect = 1.730e-33 Identity = 79/160 (49.38%), Postives = 105/160 (65.62%), Query Frame = 1
Query: 16 AIMGPSGAGKTSLLNVLAGRHREMSGVSGGLSGCGRGGRVAGAVRVSGVEVGPAKVRGLSAYVAQEDVLPETMTCFEHLMFHAELRVKWGRCFNRADRKR--RVMRELHIENIRDSRIGGELARGISGGERRRLSISTELLTRPGLLFLDEPTTGLGKTS 489
AI+GPSGAGKT+LL++LAGR + G +RV+G + +++R LS YV Q+DVLP T T EHL+FHA+LR+ G + A RKR M+ L IE + DS IG + RG+SGGE+RR+SI+TELL PG++FLDEPTTGL T+
Sbjct: 469 AILGPSGAGKTTLLDILAGRATRTHSIRGD-------------IRVNGQPIVSSQIRRLSGYVTQDDVLPGTATVHEHLLFHAKLRLPSGTS-SEAIRKRVCATMQILGIEKLADSFIGDQFQRGLSGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTN 614
BLAST of mRNA_H-elongata_contig66266.14225.1 vs. uniprot
Match: A0A090M588_OSTTA (ABC transporter, conserved site n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M588_OSTTA) HSP 1 Score: 132 bits (332), Expect = 1.070e-32 Identity = 78/160 (48.75%), Postives = 105/160 (65.62%), Query Frame = 1
Query: 16 AIMGPSGAGKTSLLNVLAGRHREMSGVSGGLSGCGRGGRVAGAVRVSGVEVGPAKVRGLSAYVAQEDVLPETMTCFEHLMFHAELRVKWGRCFNRADRKR--RVMRELHIENIRDSRIGGELARGISGGERRRLSISTELLTRPGLLFLDEPTTGLGKTS 489
AI+GPSGAGKT+LL++LAGR + G +R++G + +++R LS YV Q+DVLP + T +EHLMFHA+LR+ G + RKR M+ L IE + DS IG + RGISGGE+RR+SI+TELL PG++FLDEPTTGL T+
Sbjct: 1160 AILGPSGAGKTTLLDILAGRAPRTH-------------IIRGDIRINGQPIVSSQIRRLSGYVTQDDVLPGSATVYEHLMFHAKLRLP-GNTADTDVRKRVESTMQILGIEKLADSFIGDQFQRGISGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTN 1305
BLAST of mRNA_H-elongata_contig66266.14225.1 vs. uniprot
Match: T0QYN7_SAPDV (ABC transporter domain-containing protein (Fragment) n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QYN7_SAPDV) HSP 1 Score: 124 bits (310), Expect = 7.410e-32 Identity = 75/161 (46.58%), Postives = 106/161 (65.84%), Query Frame = 1
Query: 4 GSVTAIMGPSGAGKTSLLNVLAGRHREMSGVSGGLSGCGRGGRVAGAVRVSGVEVGPAKVRGLSAYVAQEDVLPETMTCFEHLMFHAELRVKWGRCFNRADRKRRV---MRELHIENIRDSRIGGELARGISGGERRRLSISTELLTRPGLLFLDEPTTGL 477
G + +MGPSGAGK+SLL+V+AGR + +G +V V+G + +++ LS+YV Q+DV ET+T EHL+F AELR+ G+ F+ A R+ RV + EL ++ R S+IGG RGISGG+R+RLS +TE+LT P LLF+DEPT+GL
Sbjct: 62 GELIVLMGPSGAGKSSLLDVIAGRQNDYTG----------------SVLVNG-QKWTKQMKKLSSYVMQDDVFYETLTVKEHLLFQAELRM--GKTFDAAQREARVNYVIEELGLDKCRHSQIGGGRIRGISGGQRKRLSFATEILTNPSLLFVDEPTSGL 203
BLAST of mRNA_H-elongata_contig66266.14225.1 vs. uniprot
Match: K8F154_9CHLO (ATP-binding cassette superfamily n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F154_9CHLO) HSP 1 Score: 129 bits (325), Expect = 9.070e-32 Identity = 76/163 (46.63%), Postives = 102/163 (62.58%), Query Frame = 1
Query: 4 GSVTAIMGPSGAGKTSLLNVLAGRHREMSGVSGGLSGCGRGGRVAGAVRVSGVEVGPAKVRGLSAYVAQEDVLPETMTCFEHLMFHAELRVKWGRCFNRADRK-RRVMRELHIENIRDSRIGGELARGISGGERRRLSISTELLTRPGLLFLDEPTTGLGKTS 489
G V A++GPSGAGK++L++ LAGR V GA+ + G +R SA V Q+DVLP T T +EHL+FHA LR+ G N R+ + MR+L IE + DS IG + +RG+SGGE+RR+SI+TELL PG++FLDEPTTGL T+
Sbjct: 592 GGVFAVLGPSGAGKSTLIDTLAGRTPPDR-------------NVRGAIYLDGQVASNVGLRAASACVTQDDVLPGTSTVWEHLLFHATLRMPIGTSTNALRRRVGQTMRDLGIEKLADSLIGDQFSRGLSGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTN 741
BLAST of mRNA_H-elongata_contig66266.14225.1 vs. uniprot
Match: A0A835XJI5_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XJI5_9CHLO) HSP 1 Score: 129 bits (325), Expect = 9.450e-32 Identity = 82/165 (49.70%), Postives = 106/165 (64.24%), Query Frame = 1
Query: 1 RGSVTAIMGPSGAGKTSLLNVLAGRHREMSGVSGGLSGCGRGGRVAGAVRVSGVEVGPAKVRGLSAYVAQEDVLPETMTCFEHLMFHAELRVKWGRCFNRAD--RKRRVMRELHIENIRDSRIGGELARGISGGERRRLSISTELLTRPGLLFLDEPTTGLGKTS 489
+G + A+MGPSGAGKT+LL+VLAGR +G GR +G +R++G V PA+V L YV Q+DVLP T + FE+L FHA LR+ R R R R ++R L + + S IG RG+SGGE+RR+SI+ ELLTRPGLL LDEPTTGL T+
Sbjct: 618 KGGMQAVMGPSGAGKTTLLDVLAGRR----------TGPGR----SGDIRINGHRVTPAQVSSLCGYVLQDDVLPGTASVFEYLHFHALLRLPPKRHSQRQRDARVRGLVRRLGLGRVVHSYIGDAHVRGLSGGEKRRVSIAVELLTRPGLLLLDEPTTGLDSTN 768 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66266.14225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66266.14225.1 >prot_H-elongata_contig66266.14225.1 ID=prot_H-elongata_contig66266.14225.1|Name=mRNA_H-elongata_contig66266.14225.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp MGPSGAGKTSLLNVLAGRHREMSGVSGGLSGCGRGGRVAGAVRVSGVEVGback to top mRNA from alignment at H-elongata_contig66266:1844..2820+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66266.14225.1 ID=mRNA_H-elongata_contig66266.14225.1|Name=mRNA_H-elongata_contig66266.14225.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=977bp|location=Sequence derived from alignment at H-elongata_contig66266:1844..2820+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66266:1844..2820+ >mRNA_H-elongata_contig66266.14225.1 ID=mRNA_H-elongata_contig66266.14225.1|Name=mRNA_H-elongata_contig66266.14225.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig66266:1844..2820+ (Himanthalia elongata Himel1 dioecious)back to top |