prot_H-elongata_contig66124.14205.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig66124.14205.1
Unique Nameprot_H-elongata_contig66124.14205.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length318
Homology
BLAST of mRNA_H-elongata_contig66124.14205.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 123 bits (308), Expect = 1.950e-27
Identity = 61/132 (46.21%), Postives = 87/132 (65.91%), Query Frame = 0
Query:  187 EPTTMGEAQSSSEWPQWKRAIARQMDGQTARGLCQVVERPKRKTVLGTRVIFKRKINKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTTALASIGVVLSMIAALSWEAGQLDVDMAYLEADVEEEIYVELP 318
            +P ++ EA  S+EWP+WK AIA++M    + G   +VE PK   ++G++ +F+ K N +G IE YK RLVAQGF QV GI + E+ +P   LASI ++L++ A   WE  Q+DV  AYL  D+EEEIY+  P
Sbjct:  921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQP 1052          
BLAST of mRNA_H-elongata_contig66124.14205.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 119 bits (299), Expect = 1.950e-26
Identity = 59/132 (44.70%), Postives = 86/132 (65.15%), Query Frame = 0
Query:  187 EPTTMGEAQSSSEWPQWKRAIARQMDGQTARGLCQVVERPKRKTVLGTRVIFKRKINKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTTALASIGVVLSMIAALSWEAGQLDVDMAYLEADVEEEIYVELP 318
            +P ++ EA  S+EWP+WK AI ++M    + G   +VE PK   ++G++ +F+ K N +  IE YK RLVAQGF QV GI + E+ +P   LASI ++L++ A   WE  Q+DV  AYL  D+EEEIY++ P
Sbjct:  111 DPASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQP 242          
BLAST of mRNA_H-elongata_contig66124.14205.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 114 bits (286), Expect = 1.520e-24
Identity = 54/132 (40.91%), Postives = 87/132 (65.91%), Query Frame = 0
Query:  187 EPTTMGEAQSSSEWPQWKRAIARQMDGQTARGLCQVVERPKRKTVLGTRVIFKRKINKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTTALASIGVVLSMIAALSWEAGQLDVDMAYLEADVEEEIYVELP 318
            EP ++ EAQ+S EWP+W++A+  + D     G  ++ + PK +  +G + +F+RK NK+G++ KYK RLVAQG+ Q+ G+ + E+ +P   L SI  +L++    +WE GQ+DV  AYL  D++EEIY+  P
Sbjct:  906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQP 1037          
BLAST of mRNA_H-elongata_contig66124.14205.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 113 bits (282), Expect = 5.130e-24
Identity = 58/138 (42.03%), Postives = 89/138 (64.49%), Query Frame = 0
Query:  181 ARRLDPEPTTMGEAQSSSEWPQWKRAIARQMDGQTARGLCQVVERPKRKTVLGTRVIFKRKINKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTTALASIGVVLSMIAALSWEAGQLDVDMAYLEADVEEEIYVELP 318
            A R   EP ++ EA  S +WPQW++AI ++M          +VE P+   V+G++ +F+ K N +G+IE YK RLVAQGF Q+ GI + ++ +P   LASI ++L++ A   W+  Q+DV  AYL AD+EEEI+++ P
Sbjct:  953 AVREGQEPRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQP 1090          
BLAST of mRNA_H-elongata_contig66124.14205.1 vs. uniprot
Match: A0A401GTF6_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GTF6_9APHY)

HSP 1 Score: 109 bits (273), Expect = 7.660e-23
Identity = 54/132 (40.91%), Postives = 86/132 (65.15%), Query Frame = 0
Query:  187 EPTTMGEAQSSSEWPQWKRAIARQMDGQTARGLCQVVERPKRKTVLGTRVIFKRKINKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTTALASIGVVLSMIAALSWEAGQLDVDMAYLEADVEEEIYVELP 318
            EP ++ EA  S +WPQW++AI ++M          +VE P+   ++G++ IF+ K N +G IE YK RLVAQGF QV G+ + ++ +P   LASI ++L++ A   W+  Q+DV  AYL A++EE+I+++ P
Sbjct:  928 EPRSLEEAMQSPDWPQWQQAIEKEMQNLRDHHTYDLVEPPENTNIVGSKFIFRIKHNANGEIESYKARLVAQGFTQVPGVDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNAELEEDIFMKQP 1059          
BLAST of mRNA_H-elongata_contig66124.14205.1 vs. uniprot
Match: A0A5N6PKD3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PKD3_9ASTR)

HSP 1 Score: 109 bits (272), Expect = 8.650e-23
Identity = 62/135 (45.93%), Postives = 87/135 (64.44%), Query Frame = 0
Query:  184 LDPEPTTMGEAQSSSEWPQWKRAIARQMDGQTARGLCQVVERPKRKTVLGTRVIFKRKINKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTTALASIGVVLSMIAALSWEAGQLDVDMAYLEADVEEEIYVELP 318
            ++ EP T  EA +SSE PQWK AI  ++D      + ++V+ P     LG R IFKRK+  DG I+KYK RLV +GFRQ +G+ Y ++ SP T + SI +VL++ A  + E  Q+DV  A+L  D+EEEIY+E P
Sbjct:  288 VEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQP 422          
BLAST of mRNA_H-elongata_contig66124.14205.1 vs. uniprot
Match: A0A1M2V8C6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V8C6_TRAPU)

HSP 1 Score: 109 bits (272), Expect = 1.050e-22
Identity = 56/135 (41.48%), Postives = 86/135 (63.70%), Query Frame = 0
Query:  184 LDPEPTTMGEAQSSSEWPQWKRAIARQMDGQTARGLCQVVERPKRKTVLGTRVIFKRKINKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTTALASIGVVLSMIAALSWEAGQLDVDMAYLEADVEEEIYVELP 318
            L  +PT++ EAQ + +WP+W+ AI  +MD   A     +V RP    V+G+R++F RK + DG I++ K R+VAQGF Q+ G+ Y E+ +P    +S+ ++L++ A  SW   QLDV  AYL  D++EEIY+  P
Sbjct:  984 LSGDPTSLREAQEAPDWPKWEEAITVEMDNLRAHSTYDLVVRPVGAHVIGSRLVFHRKRDADGSIKQCKVRVVAQGFGQIPGVDYNETFAPVAKSSSLRIMLALAARFSWPLIQLDVKSAYLNGDLDEEIYMRQP 1118          
BLAST of mRNA_H-elongata_contig66124.14205.1 vs. uniprot
Match: A0A5N6P275_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P275_9ASTR)

HSP 1 Score: 108 bits (269), Expect = 1.130e-22
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 0
Query:  187 EPTTMGEAQSSSEWPQWKRAIARQMDGQTARGLCQVVERPKRKTVLGTRVIFKRKINKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTTALASIGVVLSMIAALSWEAGQLDVDMAYLEADVEEEIYVELP 318
            EP T  +A +SSE PQWK AI  ++D        ++V+ P     LG R IFKRK+  DG I+KYK RLV +GFRQ +G+ Y +S SP T + SI +VL++ A  + E  Q+DV  A+L  D+EEEIY+E P
Sbjct:  284 EPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDSYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQP 415          
BLAST of mRNA_H-elongata_contig66124.14205.1 vs. uniprot
Match: A0A5N6NFL8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFL8_9ASTR)

HSP 1 Score: 108 bits (269), Expect = 1.500e-22
Identity = 62/135 (45.93%), Postives = 86/135 (63.70%), Query Frame = 0
Query:  184 LDPEPTTMGEAQSSSEWPQWKRAIARQMDGQTARGLCQVVERPKRKTVLGTRVIFKRKINKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTTALASIGVVLSMIAALSWEAGQLDVDMAYLEADVEEEIYVELP 318
            ++ EP T  EA +SSE PQWK AI  ++D        ++V+ P     LG R IFKRK+  DG I+KYK RLV +GFRQ +G+ Y ++ SP T + SI +VL++ A  + E  Q+DV  A+L  D+EEEIY+E P
Sbjct:  132 VEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQP 266          
BLAST of mRNA_H-elongata_contig66124.14205.1 vs. uniprot
Match: A0A5N6NTS6_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NTS6_9ASTR)

HSP 1 Score: 108 bits (269), Expect = 1.770e-22
Identity = 62/135 (45.93%), Postives = 86/135 (63.70%), Query Frame = 0
Query:  184 LDPEPTTMGEAQSSSEWPQWKRAIARQMDGQTARGLCQVVERPKRKTVLGTRVIFKRKINKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTTALASIGVVLSMIAALSWEAGQLDVDMAYLEADVEEEIYVELP 318
            ++ EP T  EA +SSE PQWK AI  ++D        ++V+ P     LG R IFKRK+  DG I+KYK RLV +GFRQ +G+ Y ++ SP T + SI +VL++ A  + E  Q+DV  A+L  D+EEEIY+E P
Sbjct:  205 VEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQP 339          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66124.14205.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GN13_9APHY1.950e-2746.21Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A401GP19_9APHY1.950e-2644.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GYH9_9APHY1.520e-2440.91Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A401GQU1_9APHY5.130e-2442.03Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A401GTF6_9APHY7.660e-2340.91Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6PKD3_9ASTR8.650e-2345.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A1M2V8C6_TRAPU1.050e-2241.48Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6P275_9ASTR1.130e-2246.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6NFL8_9ASTR1.500e-2245.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6NTS6_9ASTR1.770e-2245.93Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 221..318
e-value: 1.9E-23
score: 83.4
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 106..318
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 106..318

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66124contigH-elongata_contig66124:1744..2877 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66124.14205.1mRNA_H-elongata_contig66124.14205.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig66124 1744..2877 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig66124.14205.1 ID=prot_H-elongata_contig66124.14205.1|Name=mRNA_H-elongata_contig66124.14205.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=318bp
SPYKLWYGRCPTFDNIPPFGTVRYLRRSKPGHKLAPRGASCIMLGLAPDR
PQDTFRVRDPTTGHIFNRQAVTWHPPPGGKGNTPLFAPSKTTYRCLPVRR
TKTTGYASTSSTLEVVPEKLKEETPESQPRDDLSERSVSANHAIGKSLVQ
DDPSISLFRAGTLMRAPCGTLGEDVPTCGSARRLDPEPTTMGEAQSSSEW
PQWKRAIARQMDGQTARGLCQVVERPKRKTVLGTRVIFKRKINKDGRIEK
YKCRLVAQGFRQVKGIHYEESSSPTTALASIGVVLSMIAALSWEAGQLDV
DMAYLEADVEEEIYVELP
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like