prot_H-elongata_contig65581.14140.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig65581.14140.1
Unique Name	prot_H-elongata_contig65581.14140.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	67

Homology

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BLAST of mRNA_H-elongata_contig65581.14140.1 vs. uniprot
Match: A0A6H5JS55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS55_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.270e-7
Identity = 39/82 (47.56%), Postives = 44/82 (53.66%), Query Frame = 0

Query:    1 MEGNPRKAARVS------GNIKEEAGAREGV----------IAGSDDNSAQSSSSRGSRLATILVIVGTFSQVLWLTGSLLQ 66
            MEG PRK  R S      G I    G   GV          + G DDNSA+     GSR AT+LVIVGTFSQVLWL G L++
Sbjct:  233 MEGAPRKEVRSSRDSPADGGIVAAGGRGSGVGTAAAVEKRMVDGEDDNSARGGGVGGSRFATVLVIVGTFSQVLWLVGRLIE 314

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BLAST of mRNA_H-elongata_contig65581.14140.1 vs. uniprot
Match: D8LTZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ0_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 2.910e-7
Identity = 38/82 (46.34%), Postives = 43/82 (52.44%), Query Frame = 0

Query:    1 MEGNPRKAARVS------GNIKEEAGAREGV----------IAGSDDNSAQSSSSRGSRLATILVIVGTFSQVLWLTGSLLQ 66
            MEG PRK    S      G I    G   GV          + G DDNSA+     GSR AT+LVIVGTFSQVLWL G L++
Sbjct:  190 MEGTPRKKVGFSRGSLADGGIVTAGGRGSGVGTAAAVGERMVDGEDDNSARGGCEGGSRFATVLVIVGTFSQVLWLVGRLIE 271

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig65581.14140.1 vs. uniprot

BLAST of mRNA_H-elongata_contig65581.14140.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JS55_9PHAE	1.270e-7	47.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LTZ0_ECTSI	2.910e-7	46.34	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..43
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 66..66
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 44..65
None	No IPR available	TMHMM	TMhelix		coord: 44..63

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig65581	contig	H-elongata_contig65581:21..221 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig65581.14140.1	mRNA_H-elongata_contig65581.14140.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig65581 3..1465 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig65581.14140.1 ID=prot_H-elongata_contig65581.14140.1|Name=mRNA_H-elongata_contig65581.14140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MEGNPRKAARVSGNIKEEAGAREGVIAGSDDNSAQSSSSRGSRLATILVI
VGTFSQVLWLTGSLLQ*