mRNA_H-elongata_contig65453.14128.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65453.14128.1
Unique NamemRNA_H-elongata_contig65453.14128.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig65453.14128.1 vs. uniprot
Match: D8LTI7_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTI7_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.380e-15
Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:  148 LVELAQVEANKFEALLARGRQSLDDLIARTLSGNPADGV----GLDDE--LIKARSELTRLWEEGKDQVVGLAGKGEQALEVDQRLASLRSLGKDNPELAKIVSE 444
            L EL + E  + E+L+  GRQ L+ LI   LS     G     G D E  + +A +EL RLWEEGK+Q+  LAGKG +ALE+D+  ++L++L K++PELAKIVS+
Sbjct:  227 LAELTRAETARMESLVESGRQRLEGLIDAALSDGSGSGTSGNHGGDAEGGVGRAGAELMRLWEEGKEQLSELAGKGGEALELDKHFSALKTLSKESPELAKIVSD 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65453.14128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTI7_ECTSI1.380e-1546.67Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65453contigH-elongata_contig65453:1069..2187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue6.6e-14
Seed eggNOG ortholog2880.D8LTI7
EggNOG OGs28JPJ@1,2QS2W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size446
Cds size444
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65453.14128.1prot_H-elongata_contig65453.14128.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65453 1069..2187 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931041.2972476-CDS-H-elongata_contig65453:1068..11491622931041.2972476-CDS-H-elongata_contig65453:1068..1149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65453 1069..1149 -
1691679673.7127693-CDS-H-elongata_contig65453:1068..11491691679673.7127693-CDS-H-elongata_contig65453:1068..1149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65453 1069..1149 -
1622931041.3241034-CDS-H-elongata_contig65453:1443..16561622931041.3241034-CDS-H-elongata_contig65453:1443..1656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65453 1444..1656 -
1691679673.7260637-CDS-H-elongata_contig65453:1443..16561691679673.7260637-CDS-H-elongata_contig65453:1443..1656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65453 1444..1656 -
1622931041.350076-CDS-H-elongata_contig65453:2037..21871622931041.350076-CDS-H-elongata_contig65453:2037..2187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65453 2038..2187 -
1691679673.7345037-CDS-H-elongata_contig65453:2037..21871691679673.7345037-CDS-H-elongata_contig65453:2037..2187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65453 2038..2187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65453.14128.1

>prot_H-elongata_contig65453.14128.1 ID=prot_H-elongata_contig65453.14128.1|Name=mRNA_H-elongata_contig65453.14128.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
AALKACVDLTDDNCGESGTGVLFEEEAAPARVVGGADEGRKDQPQRAEHL
VELAQVEANKFEALLARGRQSLDDLIARTLSGNPADGVGLDDELIKARSE
LTRLWEEGKDQVVGLAGKGEQALEVDQRLASLRSLGKDNPELAKIVSE
back to top

mRNA from alignment at H-elongata_contig65453:1069..2187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65453.14128.1 ID=mRNA_H-elongata_contig65453.14128.1|Name=mRNA_H-elongata_contig65453.14128.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1119bp|location=Sequence derived from alignment at H-elongata_contig65453:1069..2187- (Himanthalia elongata Himel1 dioecious)
GCAGCACTGAAGGCCTGCGTGGATCTCACGGATGACAACTGTGGGGAAAG
TGGCACGGGAGTTCTATTCGAGGAGGAGGCTGCTCCGGCTAGGGTCGTTG
GAGGAGCGGATGAAGGCCGTAAAGATCAACCCCAACGCGCGGAACACTTG
GTGCGTCAGAAAGCAATAAAATAGAGCAGGGGACAGATAGATTGGAGACC
CGAGATGGCGTGTTTGTGACCATCCTTCTAGCATTCCGCTCTCTTTTTTC
TGGATATACTTTGATCATCCATGCCACCGTAGTACCTTACACAATATAGA
AGCAAGAACATCCGTAAGTTTACCCCCTCCCCCATACTGGCTCTTCGCTT
TCCAATCCCTCTCTCCTGTAAATTCGGCATACCTTTTCAGGCTGAAAGGA
TGACCCCCCCCCGCCCTCCCCCGCATACGCCTCCATAATACAGCATATTT
CCACGGTCTATCATCCTTCTTCTCTCTCTCTAAATCAAGTCCTGTTCGGA
TGATGATGCATGTGTGCTCGTGTATTGGCAGGTGGAATTGGCCCAAGTCG
AGGCCAACAAGTTCGAGGCTCTCCTAGCTAGGGGCCGACAGTCTCTGGAT
GATCTCATCGCGCGCACTTTGAGTGGAAACCCTGCCGATGGCGTCGGTCT
CGATGACGAACTGATTAAAGCGCGGTCTGAGCTTACGCGTCTGTGGGAAG
AAGGGAAGGATCAAGTGGTCGGGCTTGCCGGCAAGGGGGAGCAGGTGAAT
CACGGGCGCGTTTCAAACAAGGATAGGACGGGGGCAGGGCAGTCCCTCGA
AGTGTCCAGAGAAGTACGATTCTCTTGAGCTCAAAAATCGCCGTTAATCT
TGAAGCCTACGCTTGAGGCGGAGGGGAGTTAGCTCTCGGTTAATATTTGG
GGCGGCTATAAGCTCGCGGGCCACAAGATACTCTGCTGTACTGGCTGTTT
GATATCGCTCATTTTTTTCGACCTTCATACACATGGAAAACTTTGCCGTT
CTTTTCAACCTCGTGTTGTTGTATACCCCACTGAACAGGCGCTGGAGGTC
GACCAACGCTTGGCATCCCTGCGCTCGCTCGGGAAGGACAATCCGGAGCT
CGCCAAGATTGTCTCCGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig65453:1069..2187-

>mRNA_H-elongata_contig65453.14128.1 ID=mRNA_H-elongata_contig65453.14128.1|Name=mRNA_H-elongata_contig65453.14128.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig65453:1069..2187- (Himanthalia elongata Himel1 dioecious)
GCAGCACTGAAGGCCTGCGTGGATCTCACGGATGACAACTGTGGGGAAAG
TGGCACGGGAGTTCTATTCGAGGAGGAGGCTGCTCCGGCTAGGGTCGTTG
GAGGAGCGGATGAAGGCCGTAAAGATCAACCCCAACGCGCGGAACACTTG
GCAGCACTGAAGGCCTGCGTGGATCTCACGGATGACAACTGTGGGGAAAG
TGGCACGGGAGTTCTATTCGAGGAGGAGGCTGCTCCGGCTAGGGTCGTTG
GAGGAGCGGATGAAGGCCGTAAAGATCAACCCCAACGCGCGGAACACTTG
GTGGAATTGGCCCAAGTCGAGGCCAACAAGTTCGAGGCTCTCCTAGCTAG
GGGCCGACAGTCTCTGGATGATCTCATCGCGCGCACTTTGAGTGGAAACC
CTGCCGATGGCGTCGGTCTCGATGACGAACTGATTAAAGCGCGGTCTGAG
CTTACGCGTCTGTGGGAAGAAGGGAAGGATCAAGTGGTCGGGCTTGCCGG
CAAGGGGGAGCAGGTGGAATTGGCCCAAGTCGAGGCCAACAAGTTCGAGG
CTCTCCTAGCTAGGGGCCGACAGTCTCTGGATGATCTCATCGCGCGCACT
TTGAGTGGAAACCCTGCCGATGGCGTCGGTCTCGATGACGAACTGATTAA
AGCGCGGTCTGAGCTTACGCGTCTGTGGGAAGAAGGGAAGGATCAAGTGG
TCGGGCTTGCCGGCAAGGGGGAGCAGGCGCTGGAGGTCGACCAACGCTTG
GCATCCCTGCGCTCGCTCGGGAAGGACAATCCGGAGCTCGCCAAGATTGT
CTCCGAGGCGCTGGAGGTCGACCAACGCTTGGCATCCCTGCGCTCGCTCG
GGAAGGACAATCCGGAGCTCGCCAAGATTGTCTCCGAG
back to top