mRNA_H-elongata_contig65316.14120.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65316.14120.1
Unique NamemRNA_H-elongata_contig65316.14120.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65316.14120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65316contigH-elongata_contig65316:1150..2265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size326
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.452204-CDS-H-elongata_contig65316:1149..12991622931040.452204-CDS-H-elongata_contig65316:1149..1299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65316 1150..1299 +
1691679673.375772-CDS-H-elongata_contig65316:1149..12991691679673.375772-CDS-H-elongata_contig65316:1149..1299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65316 1150..1299 +
1622931040.4708636-CDS-H-elongata_contig65316:2090..22641622931040.4708636-CDS-H-elongata_contig65316:2090..2264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65316 2091..2264 +
1691679673.3894486-CDS-H-elongata_contig65316:2090..22641691679673.3894486-CDS-H-elongata_contig65316:2090..2264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65316 2091..2264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65316.14120.1prot_H-elongata_contig65316.14120.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65316 1150..2264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65316.14120.1

>prot_H-elongata_contig65316.14120.1 ID=prot_H-elongata_contig65316.14120.1|Name=mRNA_H-elongata_contig65316.14120.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
GAWIVGKARVLAANVCTHEEPLPQCDRQHPRLHKTCGKLQAHLVGNITMT
QILECQQAMGEDIEYDLARTIRSCIQYNAAAELGATGAGNQCGRWACMAA
AMTMFCGT
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mRNA from alignment at H-elongata_contig65316:1150..2265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65316.14120.1 ID=mRNA_H-elongata_contig65316.14120.1|Name=mRNA_H-elongata_contig65316.14120.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1116bp|location=Sequence derived from alignment at H-elongata_contig65316:1150..2265+ (Himanthalia elongata Himel1 dioecious)
GGGGCCTGGATCGTAGGCAAGGCACGAGTCCTCGCCGCCAATGTGTGTAC
TCACGAAGAACCATTACCGCAGTGTGATCGGCAGCACCCTCGGCTACACA
AAACGTGTGGGAAACTACAGGCCCACCTTGTTGGCAACATCACGATGACG
GTAGGTGCTTGTATTATACTTCGTATACAGCAGTAGGCAGCAGTGTGTTT
GCTCGATAGGTTCGGCCTGGACAGCCTACTGGTATGAGATATGCGGTATA
CAGGCAGTTACTCCACGCCCCTTATGTAACTTTCACACGCCAGCTCCCCA
CACATCAACCCGAAGGTAGCTACGTCAGGCAGTCATGCTGAAACTGCAAG
TCCCGCATGTACGTCTTTGGCTATTCAAAAAAGAGTTCAGCGTGCTTTTT
GTGATACAATAGTATGCACCTACATGCATTATTCAATACAGCAGAATGGT
ATATCGAACATGGATATCACACCTATATAAGTATGCTGTGATAGTGAACT
ACCAACAACAGCACATATTTGGGGCGTAATATGTTTGTATACTCTGTGCA
TGGAGCTTTACACCAGTAACTGAGATTTCTTCAGTGATTTTATACAATGC
TTTACTGTACAACTCTGTCTAAAACATCAGCTGAGGTTTCGTATGTAATA
ATGTATACTATAATGGCAGCTGCATGTATAAACAGCAGTATACAAAATTA
CATACAAATACACTAATAATGCTGTTTTCGAGCTGCAGGTACTCGTTCGA
TACAGAGCATACTTTTTTACATATAAAATAAGTTCTGTTGTTGGTTGTTC
CCTACATAATGTATGGTACATATTGTTGCACACTGTTGACTTTCCGGTAT
TTGGTCTTGGTAAGCACAGCTATTTCAGTACTCGGCTAAACATAGGCAAC
GAGGCTGAGCAAAAACCACGACCCCTTGCTTTTCATTGCAGCAAATACTG
GAGTGCCAGCAAGCTATGGGTGAAGATATCGAATATGATCTAGCTCGAAC
GATACGGTCTTGCATTCAGTACAACGCGGCAGCTGAGCTCGGAGCGACCG
GCGCAGGAAACCAGTGTGGTAGATGGGCATGCATGGCTGCCGCTATGACG
ATGTTTTGTGGAACGC
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Coding sequence (CDS) from alignment at H-elongata_contig65316:1150..2265+

>mRNA_H-elongata_contig65316.14120.1 ID=mRNA_H-elongata_contig65316.14120.1|Name=mRNA_H-elongata_contig65316.14120.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig65316:1150..2265+ (Himanthalia elongata Himel1 dioecious)
GGGGCCTGGATCGTAGGCAAGGCACGAGTCCTCGCCGCCAATGTGTGTAC
TCACGAAGAACCATTACCGCAGTGTGATCGGCAGCACCCTCGGCTACACA
AAACGTGTGGGAAACTACAGGCCCACCTTGTTGGCAACATCACGATGACG
GGGGCCTGGATCGTAGGCAAGGCACGAGTCCTCGCCGCCAATGTGTGTAC
TCACGAAGAACCATTACCGCAGTGTGATCGGCAGCACCCTCGGCTACACA
AAACGTGTGGGAAACTACAGGCCCACCTTGTTGGCAACATCACGATGACG
CAAATACTGGAGTGCCAGCAAGCTATGGGTGAAGATATCGAATATGATCT
AGCTCGAACGATACGGTCTTGCATTCAGTACAACGCGGCAGCTGAGCTCG
GAGCGACCGGCGCAGGAAACCAGTGTGGTAGATGGGCATGCATGGCTGCC
GCTATGACGATGTTTTGTGGAACGCAAATACTGGAGTGCCAGCAAGCTAT
GGGTGAAGATATCGAATATGATCTAGCTCGAACGATACGGTCTTGCATTC
AGTACAACGCGGCAGCTGAGCTCGGAGCGACCGGCGCAGGAAACCAGTGT
GGTAGATGGGCATGCATGGCTGCCGCTATGACGATGTTTTGTGGAACG
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