mRNA_H-elongata_contig65188.14109.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65188.14109.1
Unique NamemRNA_H-elongata_contig65188.14109.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65188.14109.1 vs. uniprot
Match: A0A6H5KH38_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH38_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 3.550e-55
Identity = 96/143 (67.13%), Postives = 116/143 (81.12%), Query Frame = 1 
Query:    4 QKDLLIDRMCNRIKNGG-HQT-SYGSLDGATGERILQRLVGMRALTPTILVAFRGCPVAALSMDNNPRATNALMVELGRKVSLTSLSVVNNDMITVEGVECLVRLRALAVLDISGCRATNGWLKAIAKLPSLERLILRGCSKV 426
            ++D+L+D +C RI+  G HQ  SYG LDGATG RILQRL  +RALTP +L AFRGCPVA LS+D NPR TNAL+ ELGRKVS+ SLS+ +ND +T+EG+E L  LRALA LDISGC+ TNGWLK IAKLP+LE L+LRGC+KV
Sbjct:  554 EQDILVDNICQRIRGSGQHQAVSYGGLDGATGTRILQRLANLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKV 696
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BLAST of mRNA_H-elongata_contig65188.14109.1 vs. uniprot
Match: D8LSQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ0_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 5.440e-55
Identity = 94/138 (68.12%), Postives = 111/138 (80.43%), Query Frame = 1 
Query:   19 IDRMCNRIKNGG-HQT-SYGSLDGATGERILQRLVGMRALTPTILVAFRGCPVAALSMDNNPRATNALMVELGRKVSLTSLSVVNNDMITVEGVECLVRLRALAVLDISGCRATNGWLKAIAKLPSLERLILRGCSKV 426
            +D +C RI+ GG HQ  SYG LD ATG RILQRL  +RALTP +L AFRGCPVA LS+D NPR TNAL+ ELGRKVS+ SLS+ +ND +T+EG+E L  LRALA LDISGC+ TNGWLK IAKLP+LE L+LRGC+KV
Sbjct:    1 MDNICQRIRGGGQHQAVSYGGLDAATGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLLLRGCTKV 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65188.14109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KH38_9PHAE3.550e-5567.13UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LSQ0_ECTSI5.440e-5568.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65188contigH-elongata_contig65188:941..3180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.1
Seed ortholog evalue4.2e-44
Seed eggNOG ortholog2880.D8LSQ0
KEGG koko:K10268
EggNOG free text desc.F-box LRR-repeat protein
EggNOG OGsKOG1947@1,KOG1947@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size426
Cds size399
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65188.14109.1prot_H-elongata_contig65188.14109.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65188 968..3180 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.559429-UTR-H-elongata_contig65188:940..9671622931038.559429-UTR-H-elongata_contig65188:940..967Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65188 941..967 +
1691679672.5013192-UTR-H-elongata_contig65188:940..9671691679672.5013192-UTR-H-elongata_contig65188:940..967Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65188 941..967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.5817788-CDS-H-elongata_contig65188:967..11771622931038.5817788-CDS-H-elongata_contig65188:967..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65188 968..1177 +
1691679672.5191362-CDS-H-elongata_contig65188:967..11771691679672.5191362-CDS-H-elongata_contig65188:967..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65188 968..1177 +
1622931038.6004386-CDS-H-elongata_contig65188:1662..17731622931038.6004386-CDS-H-elongata_contig65188:1662..1773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65188 1663..1773 +
1691679672.529355-CDS-H-elongata_contig65188:1662..17731691679672.529355-CDS-H-elongata_contig65188:1662..1773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65188 1663..1773 +
1622931038.6314902-CDS-H-elongata_contig65188:3102..31801622931038.6314902-CDS-H-elongata_contig65188:3102..3180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65188 3103..3180 +
1691679672.538533-CDS-H-elongata_contig65188:3102..31801691679672.538533-CDS-H-elongata_contig65188:3102..3180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65188 3103..3180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65188.14109.1

>prot_H-elongata_contig65188.14109.1 ID=prot_H-elongata_contig65188.14109.1|Name=mRNA_H-elongata_contig65188.14109.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MCNRIKNGGHQTSYGSLDGATGERILQRLVGMRALTPTILVAFRGCPVAA
LSMDNNPRATNALMVELGRKVSLTSLSVVNNDMITVEGVECLVRLRALAV
LDISGCRATNGWLKAIAKLPSLERLILRGCSKV
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mRNA from alignment at H-elongata_contig65188:941..3180+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65188.14109.1 ID=mRNA_H-elongata_contig65188.14109.1|Name=mRNA_H-elongata_contig65188.14109.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2240bp|location=Sequence derived from alignment at H-elongata_contig65188:941..3180+ (Himanthalia elongata Himel1 dioecious)
ACTCAAAAGGACTTGCTGATCGACCGGATGTGCAATCGGATAAAGAACGG
GGGCCATCAGACGTCCTATGGCAGCCTCGACGGCGCCACGGGTGAACGAA
TCTTGCAGCGCCTGGTGGGGATGCGCGCCCTGACGCCGACAATATTGGTG
GCGTTTCGCGGCTGCCCGGTGGCCGCCCTATCTATGGACAACAACCCCAG
AGCCACGAACGCTTTGATGGTGGAGCTCGGCCGCAAGGTAAGATGGGGGG
AGTTGCACGCTTTATCGATTAGGCGTTATTTTGGCGTGTTTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTAGGAGGAGGATCGTCCAAGTGCTTAATTTTT
TCTTGAAAGGTCTGAATTCGTTATTCATTTCCTTTGAATGTGTCGCGCTT
GTCGGCTGACAAAATAGGGGGTGAGGTGTGGTTCCAGGAGTAAAAGGCGG
CCGGCCGAGTCGTGGTCTGGCCTGATTGTCGTTTGTTTTTGTCTGGCTTG
ATGATGTTGAAAGAAAGAAAATAACTGACCGCTTCGGTTTCCTCTTGCAT
TGGGTGCCTCTTCGTAGTGTATATGTGATATGTGTAGTGTGTTTCCGTGC
GTGTGTATGTGCGTGCGTGTGCCTATGTTATTGAGTGCCCATGAATCCAT
GTTCGTGTGTGTGTGTTCGTGTGTGTTTTTTCAAATTACGTTGCTGTTAT
TTTTTTTTCATAAATGTCACAGGTATCACTAACGTCCCTCTCGGTAGTGA
ACAACGACATGATCACGGTGGAAGGCGTCGAATGCCTCGTGAGGCTCAGG
GCTCTCGCCGTTCTTGACATCAGCGGCTGCAGGGTGAGAGGGAAAAAAAA
CCCAGGCGTGACAAGCAGCCCCTTTCTCCTTTGGAAGACAAGATCTCGTT
CAAGTTTCTTGGCACTAGCTCGCGCATGAGAAGATATATCGAATCAAACG
CTATGAATTCCAAAATATCATGAAATATATATATATATATATAGTACCAG
GGTTTCCCCAGATACCAAAATGGCATTTTACTGTGTGTTTCGCCTTGGGT
CTTAACTCCCCGGGGATGCGGTTTAATTAGGCATTATATTGTATTACTCT
GTTTCAAACTATAAGCTCGCTTGAAGGAAACATAGTATAGCATATTCTCC
CCTTTGCGATTGTTTTGAACCCTTTCTTGTTGCTCTCGTGAGGTTCTGGA
GCAGAGCAGAGCAGAGCCCAGAACAGAGATCGTTGAGTTTTGTATTGGCT
CCAACCTGCTGTGCTGTGATACTGAGTTAGCTCTGACTACCAGCGGGTTT
TTGACATTGTAGCGCGAACGAAAACGAAATAGGGGGTCGGGGGGGGGGGG
GGGGAGTTGGAATCCCGGGTTAACGGTGAGGGACCGCTCTCCATCTAGAT
AAACAAGATACATACCATANNNNNNNNNNGTGGTAGGGATCACCCTGCCC
CGGGGGGGGTTTTTGAAAAGGAAGCCGAAAAGAAAAGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGATTCGAAATCCCGATTTACACGTGGAGGACGCAAC
TCCTCTATCATAATCTAGTAATAATCGTCAATGTCATTCGAGTCTTACTC
CCATCCCGATTCCCGATTCCTGGATGAGGTTACTCCCCGTCTCAACTGGC
TCTCCCTAGACCCCTATTCAGCCATAGCATTTTTTCCGCGCTTGTGGATG
TTGTTGTCATAACGCTGTAGCCATAGCCTAGCCTAATAGCCTAGTGATGG
CATACAGGAGAGGAATATGAGTCACGCGCGCGAGATGTCTACCCCGAGCT
ACCGAAGGCATCGGTATCCGTAGTGGCGCTGCCCTCAACTGGCTGGAAGG
ATTCTGGGCTAGTTCACCCCCTCCACCCCCCCCGCCTCCTCCACGTCTTG
CACAGGAAGACATCACAGTATGTGGTACGGGAGTAGGGATCGATTATGCC
AGTGCTGCCAGAGGGTGATGTCAGCCCACGCTTTGGAGGCCGCTTTTGCT
GGATCCTTGCGTGGCGTGTCTAACGTTTCTCTAACGATTGGGTCTCACCC
TTCCCTTCCTCCCTCCTTCCCCTCTTCCCTTGTAACCCCTGAGCCCTTTT
CTCTCCCGCGCGACTGGGGTTTCCACTCCACTCCGCCTTTGTCATATTTT
GGCTTGTTCCAGGCGACGAACGGATGGCTCAAGGCCATCGCGAAGCTCCC
CTCCCTCGAGAGGCTGATCCTGCGAGGCTGCTCTAAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig65188:941..3180+

>mRNA_H-elongata_contig65188.14109.1 ID=mRNA_H-elongata_contig65188.14109.1|Name=mRNA_H-elongata_contig65188.14109.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig65188:941..3180+ (Himanthalia elongata Himel1 dioecious)
ATGTGCAATCGGATAAAGAACGGGGGCCATCAGACGTCCTATGGCAGCCT
CGACGGCGCCACGGGTGAACGAATCTTGCAGCGCCTGGTGGGGATGCGCG
CCCTGACGCCGACAATATTGGTGGCGTTTCGCGGCTGCCCGGTGGCCGCC
CTATCTATGGACAACAACCCCAGAGCCACGAACGCTTTGATGGTGGAGCT
CGGCCGCAAGATGTGCAATCGGATAAAGAACGGGGGCCATCAGACGTCCT
ATGGCAGCCTCGACGGCGCCACGGGTGAACGAATCTTGCAGCGCCTGGTG
GGGATGCGCGCCCTGACGCCGACAATATTGGTGGCGTTTCGCGGCTGCCC
GGTGGCCGCCCTATCTATGGACAACAACCCCAGAGCCACGAACGCTTTGA
TGGTGGAGCTCGGCCGCAAGGTATCACTAACGTCCCTCTCGGTAGTGAAC
AACGACATGATCACGGTGGAAGGCGTCGAATGCCTCGTGAGGCTCAGGGC
TCTCGCCGTTCTTGACATCAGCGGCTGCAGGGTATCACTAACGTCCCTCT
CGGTAGTGAACAACGACATGATCACGGTGGAAGGCGTCGAATGCCTCGTG
AGGCTCAGGGCTCTCGCCGTTCTTGACATCAGCGGCTGCAGGGCGACGAA
CGGATGGCTCAAGGCCATCGCGAAGCTCCCCTCCCTCGAGAGGCTGATCC
TGCGAGGCTGCTCTAAGGTAGCGACGAACGGATGGCTCAAGGCCATCGCG
AAGCTCCCCTCCCTCGAGAGGCTGATCCTGCGAGGCTGCTCTAAGGTA
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