mRNA_H-elongata_contig65077.14094.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65077.14094.1
Unique NamemRNA_H-elongata_contig65077.14094.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65077.14094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65077contigH-elongata_contig65077:745..2301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size412
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65077.14094.1prot_H-elongata_contig65077.14094.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65077 745..2097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.7016382-CDS-H-elongata_contig65077:744..8181622931036.7016382-CDS-H-elongata_contig65077:744..818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65077 745..818 -
1691679671.643307-CDS-H-elongata_contig65077:744..8181691679671.643307-CDS-H-elongata_contig65077:744..818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65077 745..818 -
1622931036.7225683-CDS-H-elongata_contig65077:1964..20971622931036.7225683-CDS-H-elongata_contig65077:1964..2097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65077 1965..2097 -
1691679671.6517265-CDS-H-elongata_contig65077:1964..20971691679671.6517265-CDS-H-elongata_contig65077:1964..2097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65077 1965..2097 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.7413878-UTR-H-elongata_contig65077:2097..23011622931036.7413878-UTR-H-elongata_contig65077:2097..2301Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65077 2098..2301 -
1691679671.6617334-UTR-H-elongata_contig65077:2097..23011691679671.6617334-UTR-H-elongata_contig65077:2097..2301Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65077 2098..2301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65077.14094.1

>prot_H-elongata_contig65077.14094.1 ID=prot_H-elongata_contig65077.14094.1|Name=mRNA_H-elongata_contig65077.14094.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MSESVQLHYRTNTCVAEITSVPEILDAVGAEVGLGAFDDGNLSADEQEAA
REVAKAMSKVRPLLGQYQQ
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mRNA from alignment at H-elongata_contig65077:745..2301-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65077.14094.1 ID=mRNA_H-elongata_contig65077.14094.1|Name=mRNA_H-elongata_contig65077.14094.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1557bp|location=Sequence derived from alignment at H-elongata_contig65077:745..2301- (Himanthalia elongata Himel1 dioecious)
GTAATGTCTGTTGCAGATAGGAGATTAAGAGAGCAGGCTCGAGCTAGATT
ACCTAAAAAAGTGATATTACTTCTAGGTTGCGAGGTGTTAAGCCTGAAGC
AGCATCCATTATTCCAGTAGAGCATCATCACGAAACTATAAAATCTCTGA
AGAATTCCGCCGCATCCTGTTCCTGCCGCTGCTGCTGCAGAGACGAGGAG
CGTAATGAGCGAATCAGTCCAACTCCATTACAGAACAAACACCTGCGTAG
CTGAAATCACTTCGGTACCGGAAATTCTGGATGCCGTTGGTGCTGAAGTC
GGGCTGGGTGCTTTCGATGACGGCAATCTTAGCGCAGGTACAGTTGTGCG
ACATATATGCGGCGTCCGCCCTTTCTCCACAGTAAATCTCCCTGTCGTTG
TAATGATAAAAGTATTGGTACAACAGTTACCACACAGTGTACAACCTGCC
CCGTAGCACCTATGGTGAGCAGATAGGTTGATAGAAGCGGGCCATCGGTA
AAGTAGTATATTCAACTCATCAAACGTACCTTGCATCATGCATTCCAACC
TCGACACTTATCCGCCAAACCCGCTGTGCCGCTCTCTTTCTTTTATACCC
TAATTGTCATATACTCTACCGCTTCCGATGTTGTCTGTAACTGTATATCG
CACATGTCCACTGCACCAATAGTGGATGTTGGAAAATAGAGGCGCACAAT
ATTTGGTCCGTGGGGTTACCTGGATAGGCTATATCCGTTACTCAAAACTA
CCTTGAGGATTGATGACTCAGTGTTGGCGGAATCTCGGTAGTAAGGGACA
TCGGTACGTAATTGTGTGACCTGATGAAATCGGGATTGGCCCGATGTCGG
TTGACGGTAGAGATGGGCGCCGTCGCGGAAAATGAGAAGATTGAAAGGAT
CCCAGAGGTGCGCACCAGATTCAGCCTGGGTTGAGAGAATGAGCAGGCTG
ACGCGGGACGGGACTGCCGAACCCATCTCGCAAGACCAAATTGTAAGGCG
CGAACGGGGACAGGGAAAAATAAGCTTCCCTATTCAGCTGACCATAAGCA
TGAGGCAACCAAATCCGGTTGACCCTTACTTCAATCTTTGTGATGACGTC
ATGACCTCACACTCAGTTAAGGTAGTGCGTCTGCTGCTCCCTCGCTGCCC
CTCTCTTCGCTTTCACCCATCGTCAGTTGAGCGTCGGTGCTCAAGCCGTG
CGGTGCTATTTTGTTAAGGCATTTTGGGCTTTCTGCCGCCCCCCTCCCCG
CCTCCCCTTTATTTTTATTTTCCTGTCTAACCACCCTCTACAGTTACCTC
TATTTCACGGCCTAGCGGAAGGTCGGGAGCCGTAAAACATGGTTTCAGCA
CCAATCCATCAATTCATATATAATCCTGCGGCGTTCGGTGCAGGCACATA
ACCCCTCCTCTAAAAAAAAAATGATTTCCTCTTTTCAACCACGTCTACGG
TTTACGACGTTTTTTCTCGATTTTTTTGTTTAGACGAGCAGGAAGCGGCG
AGGGAGGTCGCGAAAGCGATGTCGAAGGTGAGGCCGCTCCTTGGGCAGTA
CCAGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig65077:745..2301-

>mRNA_H-elongata_contig65077.14094.1 ID=mRNA_H-elongata_contig65077.14094.1|Name=mRNA_H-elongata_contig65077.14094.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig65077:745..2301- (Himanthalia elongata Himel1 dioecious)
ATGAGCGAATCAGTCCAACTCCATTACAGAACAAACACCTGCGTAGCTGA
AATCACTTCGGTACCGGAAATTCTGGATGCCGTTGGTGCTGAAGTCGGGC
TGGGTGCTTTCGATGACGGCAATCTTAGCGCAGATGAGCGAATCAGTCCA
ACTCCATTACAGAACAAACACCTGCGTAGCTGAAATCACTTCGGTACCGG
AAATTCTGGATGCCGTTGGTGCTGAAGTCGGGCTGGGTGCTTTCGATGAC
GGCAATCTTAGCGCAGACGAGCAGGAAGCGGCGAGGGAGGTCGCGAAAGC
GATGTCGAAGGTGAGGCCGCTCCTTGGGCAGTACCAGCAGACGAGCAGGA
AGCGGCGAGGGAGGTCGCGAAAGCGATGTCGAAGGTGAGGCCGCTCCTTG
GGCAGTACCAGCAG
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