mRNA_H-elongata_contig6504.14093.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6504.14093.1
Unique NamemRNA_H-elongata_contig6504.14093.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6504.14093.1 vs. uniprot
Match: D8LE67_ECTSI (Protein MAK16 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE67_ECTSI)

HSP 1 Score: 391 bits (1004), Expect = 6.950e-129
Identity = 212/260 (81.54%), Postives = 223/260 (85.77%), Query Frame = 1 
Query:   97 MQSDDVIWQVLNNQFCSFKSKVAKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGICYLYIKTIERAHTPKNLWEKMKLSRNYAKALERVSTELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVPINPKVAKRETMREKKALLAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALRQAEDEYADQNPQEMEDEEEGEVEYVEDLEEDES---DIEDAAEWGGSHWGAQISARGERGPSAERGDES 867
            MQSDDVIWQV+N QFCSFKSK+AKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDG+CYLYIKTIERAHTPKNLWEK+KLSRNY KALERVS ELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLV INPKV KRE MREKKAL+AAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKAL +AEDEYA+QNP+ ME+E                   DIED AEWGGS+WGA  SA G   P A RG +S
Sbjct:    1 MQSDDVIWQVVNYQFCSFKSKIAKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALMEAEDEYAEQNPEAMEEEXXXXXXXXXXXXXXXXXXXDIEDTAEWGGSYWGAPGSAGG---PQAARGGDS 257
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BLAST of mRNA_H-elongata_contig6504.14093.1 vs. uniprot
Match: A0A835ZFG7_9STRA (Protein MAK16 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFG7_9STRA)

HSP 1 Score: 326 bits (836), Expect = 6.760e-104
Identity = 219/352 (62.22%), Postives = 258/352 (73.30%), Query Frame = 1 
Query:   97 MQSDDVIWQVLNNQFCSFKSKVAKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGICYLYIKTIERAHTPKNLWEKMKLSRNYAKALERVSTELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVPINPKVAKRETMREKKALLAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALRQAEDEYADQNPQEMEDEEEGE------------VEYVEDLEEDESDIEDAAEWGGSHWGAQISARGERGPSAERGDESEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDAPKRRGSAKRSKPLHPYVEVEYEEETEDAAAES-MSFNW 1113
            MQ D+VIW V+N+QFC+FK+K+AKEQTFCRN YN TGLCN+ SCPLANSRYATI+EHDG+CYLY+K+IERAH+PKNLWEK+KL RNY +ALE VS +L++FPK+LQH++KQRLTKIHQYLIRMRKLKLKA+PKLV IN KV +RE         AA L+RSIE ELLERLK+GTYGDIYNFPEVQY KAL+QAE+E++         EEE              VEYVE  EE+ESD+ED A WG S+WGA+  +  + G   E  D S+E+XXXXXXXXXXXXXXXXXXXXXXX                + A K  G   + +P  PYVEVEYEEE E  A ES MSFNW
Sbjct:    1 MQCDEVIWSVINHQFCAFKAKIAKEQTFCRNPYNATGLCNRGSCPLANSRYATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQYFPKYLQHKNKQRLTKIHQYLIRMRKLKLKARPKLVAINKKVERREAKXXXXXEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYGKALQQAEEEFSG--------EEEXXXXXXXXXXXXXXVEYVEGDEEEESDMEDGA-WGSSYWGAEGGS--DAGSDGETVDASDEEXXXXXXXXXXXXXXXXXXXXXXXKRVKGA----------AGAKKAVGGQGKKRP-GPYVEVEYEEEMEGGATESSMSFNW 330
[Close]
BLAST of mRNA_H-elongata_contig6504.14093.1 vs. uniprot
Match: A0A067C7V2_SAPPC (Protein MAK16 homolog n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C7V2_SAPPC)

HSP 1 Score: 281 bits (720), Expect = 4.660e-87
Identity = 147/221 (66.52%), Postives = 181/221 (81.90%), Query Frame = 1 
Query:   97 MQSDDVIWQVLNNQFCSFKSKVAKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGICYLYIKTIERAHTPKNLWEKMKLSRNYAKALERVSTELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVPINPKVAKRETMREKKALLAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALRQAEDEYAD-QNPQEME-DEEEGEVEYVEDL 753
            MQ D+VIW V++NQFCSFKSK+ +   FCRNEYNVTGLCN+ SCPLANSRYATIREH+G+CYLY+KTIERAH+PKNLWEK+KLS+NY K+LE++  +++F+PK L HR+KQRLTKIHQYL+RMRKL+LK KP LV IN K+ +RE  RE+KA  AAKL+ SIE ELL+RL+KGTYGDIYNFPE ++ K L   E+E    ++  EME D   G+VEYVED 
Sbjct:    1 MQHDEVIWGVISNQFCSFKSKLREGAMFCRNEYNVTGLCNRQSCPLANSRYATIREHNGVCYLYMKTIERAHSPKNLWEKVKLSKNYTKSLEQIDAQMQFWPKKLIHRNKQRLTKIHQYLMRMRKLRLKTKPNLVVINKKIERREARREEKAKTAAKLDSSIEKELLQRLQKGTYGDIYNFPEREFAKVLDDNEEEXXXGEDEYEMESDXXXGQVEYVEDF 221
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BLAST of mRNA_H-elongata_contig6504.14093.1 vs. uniprot
Match: A0A3F2RF83_9STRA (Protein MAK16 homolog n=6 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RF83_9STRA)

HSP 1 Score: 278 bits (712), Expect = 1.260e-85
Identity = 152/252 (60.32%), Postives = 187/252 (74.21%), Query Frame = 1 
Query:   97 MQSDDVIWQVLNNQFCSFKSKV-AKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGICYLYIKTIERAHTPKNLWEKMKLSRNYAKALERVSTELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVPINPKVAKRETMREKKALLAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALRQAEDEYADQNPQEMEDE--------------------EEGEVEYVEDLEEDESDIEDAAE 789
            MQ D+VIW V++ QFCSFKSK+      FC N YNVTGLCN+S+CPLANSRYATIREHDG+CYLY+KTIERAHTP  LWE++KLS+NY K+L ++  +L+F+PK L H++KQRLTKIHQYL+RMRKL LK KPKLV IN K+ +RE  REKKA++AAKL+ SIE ELLERL+KGTYGDIYNFPE ++ K L       ++   Q ME+E                    + G+VEYVED EEDESD+ED A+
Sbjct:    1 MQHDEVIWGVISKQFCSFKSKLPGTGNMFCSNPYNVTGLCNRSACPLANSRYATIREHDGVCYLYMKTIERAHTPNRLWERVKLSKNYTKSLAQIDEQLQFWPKKLIHKNKQRLTKIHQYLMRMRKLTLKTKPKLVVINKKIERREKRREKKAMVAAKLDNSIEKELLERLQKGTYGDIYNFPESEFSKVLE------SNGKRQTMEEEXXXXXXXXXXXXXXXXXXXXDAGQVEYVEDFEEDESDLEDLAD 246
[Close]
BLAST of mRNA_H-elongata_contig6504.14093.1 vs. uniprot
Match: A0A1V9YTR0_9STRA (Protein MAK16 homolog n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YTR0_9STRA)

HSP 1 Score: 274 bits (700), Expect = 6.290e-84
Identity = 142/221 (64.25%), Postives = 175/221 (79.19%), Query Frame = 1 
Query:   97 MQSDDVIWQVLNNQFCSFKSKVAKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGICYLYIKTIERAHTPKNLWEKMKLSRNYAKALERVSTELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVPINPKVAKRETMREKKALLAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALRQAEDEYADQNPQEM--EDEEEGEVEYVEDL 753
            MQ D+VIW V++NQFCSFKSK+ +   FCRNEYNVTGLCN+ SCPLANSRYATIREH+G+CYLY+KTIERAH+PKNLWEK+KLS+NY K+L ++  +++F+PK + HR+KQRLTKIHQYL+RMRKL+LK KP LV IN K+ +RE  RE+KA  AAKL+ SIE ELL RL+KGTYGDIYNFPE ++ K L + E              D+E G+VEYVED 
Sbjct:    1 MQHDEVIWGVISNQFCSFKSKLREGAMFCRNEYNVTGLCNRQSCPLANSRYATIREHNGVCYLYMKTIERAHSPKNLWEKVKLSKNYTKSLAQIDEQMQFWPKKMIHRNKQRLTKIHQYLMRMRKLRLKTKPNLVVINKKIERREARREEKAKTAAKLDSSIEKELLARLQKGTYGDIYNFPEKEFVKVLDENEXXXXXXXXXXXXXSDDESGQVEYVEDF 221
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BLAST of mRNA_H-elongata_contig6504.14093.1 vs. uniprot
Match: F0XYH3_AURAN (Ribosomal_L28e domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYH3_AURAN)

HSP 1 Score: 268 bits (684), Expect = 1.280e-82
Identity = 147/228 (64.47%), Postives = 178/228 (78.07%), Query Frame = 1 
Query:  103 SDDVIWQVLNNQFCSFKSKVAKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGICYLYIKTIERAHTPKNLWEKMKLSRNYAKALERVSTELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVPINPKVAKRETMREKKALLAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALRQAEDEYADQNPQEMEDEEEGE--VEYVEDLEEDESDIED 780
            +D++IWQ LN  FCSFKS V+K   FCRNE NVTGLCNKS+CPLANSRYATIRE +G CYL IKTIERAH PK LW+K+KL RNYAKAL  V+ ELE FPK LQHR+KQRLT+I+QYLIRMRKL L+++P +  ++ KV +RE  +E KAL+AAKL +SIE ELL+RLK+GTYGDIYNFPE+ Y+ AL  A+D    +   E EDE   E  VEY+E  E+ ESD+ED
Sbjct:    1 NDELIWQSLNGNFCSFKSTVSKTHNFCRNEQNVTGLCNKSACPLANSRYATIREIEGRCYLMIKTIERAHMPKKLWQKIKLPRNYAKALAVVTEELEHFPKFLQHRNKQRLTRIYQYLIRMRKLALRSRPHMAVVHKKVERRENRKEVKALVAAKLNKSIESELLQRLKQGTYGDIYNFPEMHYNAALDSAQDLELAEMEAEYEDEXXXERLVEYIEAAEDFESDMED 228
[Close]
BLAST of mRNA_H-elongata_contig6504.14093.1 vs. uniprot
Match: F0W824_9STRA (Protein MAK16 homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W824_9STRA)

HSP 1 Score: 269 bits (688), Expect = 3.700e-82
Identity = 143/234 (61.11%), Postives = 184/234 (78.63%), Query Frame = 1 
Query:   97 MQSDDVIWQVLNNQFCSFKSKV-AKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGICYLYIKTIERAHTPKNLWEKMKLSRNYAKALERVSTELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVPINPKVAKRETMREKKALLAAKLERSIEGELLERLKKGTYGDIYNFPEVQY-----DKALRQAEDEYADQNPQEMEDEEEGEVEYVEDLEEDESDIED 780
            MQ D+VIW V++ QFCSFKSK+ A +  FCRNEYNV+GLCN+ +CPLANSRYAT+RE +GICYLY+KTIERAH+PK LWE++KLSRNY+++LE++   L+F+PK + H+ KQR TKIHQYL+RMRKL+ + KPKLV IN K+ +RE+ REKKA  AAK++ +IE ELLERL+KGTYGDIYNFPE ++     +K + Q E+E   +   E E+EE    EYVED EE E +IED
Sbjct:    1 MQHDEVIWGVISGQFCSFKSKLPATKAMFCRNEYNVSGLCNRGACPLANSRYATVREQEGICYLYMKTIERAHSPKRLWERIKLSRNYSRSLEQIDQHLQFWPKKMIHKVKQRQTKIHQYLLRMRKLQGQIKPKLVVINKKIERRESRREKKAQAAAKIDSAIEKELLERLEKGTYGDIYNFPEKEFSAIINNKGVAQTEEENGVEEELEYENEENALTEYVEDFEESEDEIED 234
[Close]
BLAST of mRNA_H-elongata_contig6504.14093.1 vs. uniprot
Match: A0A4D9D3B1_9STRA (Protein MAK16 homolog n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3B1_9STRA)

HSP 1 Score: 270 bits (689), Expect = 5.630e-82
Identity = 140/189 (74.07%), Postives = 162/189 (85.71%), Query Frame = 1 
Query:  106 DDVIWQVLNNQFCSFKSKV-AKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGICYLYIKTIERAHTPKNLWEKMKLSRNYAKALERVSTELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKA-KPKLVPINPKVAKRETMREKKALLAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKAL 666
            D++IWQ++N+QFCSFKSK+ AKE TFCRN YNVTGLC +S+CPLANSRYATIRE +G CYL +KT ERAHTP  LWEK++L  NYAKALE+VS ELE+FPK+LQHR+KQRLTKIHQYLIRMRKLKLKA KPKLV I+ KV +RE  RE KAL AAKLE++IE ELL RL++GTYGDIYNFPE  Y K L
Sbjct:    5 DEIIWQIINHQFCSFKSKLNAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEELEYFPKYLQHRNKQRLTKIHQYLIRMRKLKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVL 193
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BLAST of mRNA_H-elongata_contig6504.14093.1 vs. uniprot
Match: A0A0P1A7J6_PLAHL (Protein MAK16 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7J6_PLAHL)

HSP 1 Score: 268 bits (684), Expect = 1.500e-81
Identity = 149/242 (61.57%), Postives = 186/242 (76.86%), Query Frame = 1 
Query:   97 MQSDDVIWQVLNNQFCSFKSKVAKEQT-FCRNEYNVTGLCNKSSCPLANSRYATIREHDGICYLYIKTIERAHTPKNLWEKMKLSRNYAKALERVSTELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVPINPKVAKRETMREKKALLAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKAL-----RQA-EDEYADQNPQEMEDEEE-----GEVEYVEDLEEDESDIEDAA 786
            MQ D+VIW V++ QFCSFKSK+   ++ FC N YNVTGLCN+S+CPLANSRYAT+RE +G+CYLY+KTIERAHTP  LWE++KLS+NY K+L ++  +L+F+PK L H+ KQRLTKIHQYL+RMRKL L+ KPKLV IN K+ +RE  REKKA++AAKL+ SIE ELLERL+KGTYGDIYNFPE ++ K L     RQ  E+E  D+   E E +E      G+VEYVED    ESD+ED A
Sbjct:    1 MQHDEVIWSVISKQFCSFKSKLPDTKSMFCSNLYNVTGLCNRSACPLANSRYATVREENGVCYLYMKTIERAHTPNRLWERVKLSKNYTKSLAQIDEQLQFWPKKLIHKCKQRLTKIHQYLMRMRKLTLQTKPKLVVINKKIDRREKRREKKAMVAAKLDNSIEKELLERLQKGTYGDIYNFPEREFSKVLADKGKRQTMEEESEDEAEIEYEVDEXXXXDVGQVEYVEDFXXXESDLEDLA 242
[Close]
BLAST of mRNA_H-elongata_contig6504.14093.1 vs. uniprot
Match: W7TVF8_9STRA (Protein MAK16 homolog n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVF8_9STRA)

HSP 1 Score: 266 bits (681), Expect = 7.390e-81
Identity = 138/189 (73.02%), Postives = 161/189 (85.19%), Query Frame = 1 
Query:  106 DDVIWQVLNNQFCSFKSKV-AKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGICYLYIKTIERAHTPKNLWEKMKLSRNYAKALERVSTELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKA-KPKLVPINPKVAKRETMREKKALLAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKAL 666
            D++IWQ++N+QFCSFKSK+ AKE TFCRN YNVTGLC +S+CPLANSRYATIRE +G CYL +KT ERAHTP  LWEK++L  NYAKALE+VS  LE+FPK+LQHR+KQRLTKIHQYLIRMR+LKLKA KPKLV I+ KV +RE  RE KAL AAKLE++IE ELL RL++GTYGDIYNFPE  Y K L
Sbjct:    5 DEIIWQIINHQFCSFKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVL 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6504.14093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE67_ECTSI6.950e-12981.54Protein MAK16 homolog n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835ZFG7_9STRA6.760e-10462.22Protein MAK16 homolog n=1 Tax=Tribonema minus TaxI... [more]
A0A067C7V2_SAPPC4.660e-8766.52Protein MAK16 homolog n=4 Tax=Saprolegniaceae TaxI... [more]
A0A3F2RF83_9STRA1.260e-8560.32Protein MAK16 homolog n=6 Tax=Phytophthora TaxID=4... [more]
A0A1V9YTR0_9STRA6.290e-8464.25Protein MAK16 homolog n=1 Tax=Thraustotheca clavat... [more]
F0XYH3_AURAN1.280e-8264.47Ribosomal_L28e domain-containing protein (Fragment... [more]
F0W824_9STRA3.700e-8261.11Protein MAK16 homolog n=1 Tax=Albugo laibachii Nc1... [more]
A0A4D9D3B1_9STRA5.630e-8274.07Protein MAK16 homolog n=1 Tax=Nannochloropsis sali... [more]
A0A0P1A7J6_PLAHL1.500e-8161.57Protein MAK16 homolog n=1 Tax=Plasmopara halstedii... [more]
W7TVF8_9STRA7.390e-8173.02Protein MAK16 homolog n=1 Tax=Nannochloropsis gadi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6504contigH-elongata_contig6504:4763..9930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score402.1
Seed ortholog evalue2.5e-109
Seed eggNOG ortholog2880.D8LE67
Preferred nameMAK16
KEGG rclassRC00020,RC02814,RC02821
KEGG koko:K01738,ko:K14831,ko:K19984
KEGG ReactionR00897,R03601,R04859
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00021
GOsGO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG5129@1,KOG3064@2759
EC2.5.1.47
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMak16 protein
Ec32 orthologEc-00_001130.1
Exons8
Model size1811
Cds size1020
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6504.14093.1prot_H-elongata_contig6504.14093.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6504 5458..9834 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.4825718-UTR-H-elongata_contig6504:4762..54571622931036.4825718-UTR-H-elongata_contig6504:4762..5457Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6504 4763..5457 -
1691679671.5403008-UTR-H-elongata_contig6504:4762..54571691679671.5403008-UTR-H-elongata_contig6504:4762..5457Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6504 4763..5457 -
1622931036.6264625-UTR-H-elongata_contig6504:9834..99301622931036.6264625-UTR-H-elongata_contig6504:9834..9930Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6504 9835..9930 -
1691679671.6350398-UTR-H-elongata_contig6504:9834..99301691679671.6350398-UTR-H-elongata_contig6504:9834..9930Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6504 9835..9930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.502008-CDS-H-elongata_contig6504:5457..56811622931036.502008-CDS-H-elongata_contig6504:5457..5681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 5458..5681 -
1691679671.5535452-CDS-H-elongata_contig6504:5457..56811691679671.5535452-CDS-H-elongata_contig6504:5457..5681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 5458..5681 -
1622931036.5173106-CDS-H-elongata_contig6504:6154..63141622931036.5173106-CDS-H-elongata_contig6504:6154..6314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 6155..6314 -
1691679671.565318-CDS-H-elongata_contig6504:6154..63141691679671.565318-CDS-H-elongata_contig6504:6154..6314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 6155..6314 -
1622931036.536155-CDS-H-elongata_contig6504:6924..69961622931036.536155-CDS-H-elongata_contig6504:6924..6996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 6925..6996 -
1691679671.5774703-CDS-H-elongata_contig6504:6924..69961691679671.5774703-CDS-H-elongata_contig6504:6924..6996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 6925..6996 -
1622931036.5523667-CDS-H-elongata_contig6504:7600..77441622931036.5523667-CDS-H-elongata_contig6504:7600..7744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 7601..7744 -
1691679671.589359-CDS-H-elongata_contig6504:7600..77441691679671.589359-CDS-H-elongata_contig6504:7600..7744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 7601..7744 -
1622931036.5668135-CDS-H-elongata_contig6504:7932..81061622931036.5668135-CDS-H-elongata_contig6504:7932..8106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 7933..8106 -
1691679671.6021152-CDS-H-elongata_contig6504:7932..81061691679671.6021152-CDS-H-elongata_contig6504:7932..8106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 7933..8106 -
1622931036.5841296-CDS-H-elongata_contig6504:8359..85161622931036.5841296-CDS-H-elongata_contig6504:8359..8516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 8360..8516 -
1691679671.6106126-CDS-H-elongata_contig6504:8359..85161691679671.6106126-CDS-H-elongata_contig6504:8359..8516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 8360..8516 -
1622931036.5987754-CDS-H-elongata_contig6504:8719..88021622931036.5987754-CDS-H-elongata_contig6504:8719..8802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 8720..8802 -
1691679671.6186101-CDS-H-elongata_contig6504:8719..88021691679671.6186101-CDS-H-elongata_contig6504:8719..8802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 8720..8802 -
1622931036.6142943-CDS-H-elongata_contig6504:9828..98341622931036.6142943-CDS-H-elongata_contig6504:9828..9834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 9829..9834 -
1691679671.6267464-CDS-H-elongata_contig6504:9828..98341691679671.6267464-CDS-H-elongata_contig6504:9828..9834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 9829..9834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6504.14093.1

>prot_H-elongata_contig6504.14093.1 ID=prot_H-elongata_contig6504.14093.1|Name=mRNA_H-elongata_contig6504.14093.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=340bp
MQSDDVIWQVLNNQFCSFKSKVAKEQTFCRNEYNVTGLCNKSSCPLANSR
YATIREHDGICYLYIKTIERAHTPKNLWEKMKLSRNYAKALERVSTELEF
FPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVPINPKVAKRETMREK
KALLAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALRQAEDEYADQ
NPQEMEDEEEGEVEYVEDLEEDESDIEDAAEWGGSHWGAQISARGERGPS
AERGDESEEDADDDDGDSKAGEGPDLMAKKKRKTGGSGEGKRKGAGRAES
DAPKRRGSAKRSKPLHPYVEVEYEEETEDAAAESMSFNW*
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mRNA from alignment at H-elongata_contig6504:4763..9930-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6504.14093.1 ID=mRNA_H-elongata_contig6504.14093.1|Name=mRNA_H-elongata_contig6504.14093.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5168bp|location=Sequence derived from alignment at H-elongata_contig6504:4763..9930- (Himanthalia elongata Himel1 dioecious)
GTTGAGTTGATGCCTTAAATCAACAAACAGGGCGTAACGTGTGCTCGAGG
TGGTCAAGCGTGGCACTACTTCCCTGCGATCAATAAGCAAGGCATCATGC
AGGTATAAATTCACGCTTAACGTGGACAATATGGCATATTATGTCTCAGT
TATGCAACTTCTTTATGCTTGTCCACTTCGCACCACACACCCAAAATCGT
TCGAACGGCCAACGCGCGATCCCGCTCCAAGTATGGAAGCGGTTTGGAGC
GGAAAATATATCTGATGTACCTGATAGATTGTAGCCAAGCAAAGAGATGC
ATTGTTGATAATGTTGGTATCGGTTTTAGCTGTGAGTTGTCGATGCTTGT
CTAGGGGTGATGTGGATCCTTTGTCGTCTTCACCTTTTATCACATTCCTT
ATTATATAGCATTTAGAGACAAGAACCGTCATTGCGAGGGTTGGCTGAGC
ATGACTCAAGTCCAACCTCTTATTTTTATTTTAAAACCTAATGAACTCAT
TGCACCCCAACGATCGTCCACATCTTCTTATCGCCGTGAGAGGTGTAATC
CAGGGGACCAACTATCGTCAGCTTCGAATGTATATATTACTACCTTCGAG
CAGAAAATCGTCACGTGTGATTAATTGTGTTCCCCAATTATTATTTTCGC
ACATAAGTCCGATATCTCGAGCCCGTGGTCACAGACGCAGGCTTCCTTTT
CCATACCATCGCTACATCCGAAAACAAATAAAAGAAGAGAAAGAGAGGAA
AAAATAACATACGAGAAAGCCTCCCCCGGTGTTGCTGACGGCTTCGAGCA
TCCCATGAGTGGATGCCACGCGGATATCACAACCTTGTAAGGGTTGAAGA
GTTCGTCGCATGCATCAGACTTTTTAAAGTACTAATTTAAAGATCACCAT
GCGACCTCCCACCGAGAGGCAAGCATCGTCGATATTATGGGTGTGCGAAA
TGGTGTCGTCCTCTCTCAATCCATTTCTCCTATAAATTCGGTTACTGCTA
AGATTCTTCTGGATTTTAACTTCCCATTCATCCATCCCTCCTGAACGATA
AATATGCTCCTGGACGTATTTATATTAAAAATCCTATTAACTCTTTAAAA
CCCTCCGTTACATTCCACCTAACATCAGAGTGACGATGTCATCTGGCAAG
TGTTGAACAATCAATTCTGCTCGTTCAAGAGCAAGGTCGCCAAGGAACAA
ACCTTCTGCAGGTGAAGTTCGATTTTTATTTTCCCGGACGTTTCCCTATC
GCTCTCTAGCCGAAAACGTTCTCAGTGTAAAGGGGAACCGTCATGAACAG
GAGGGAACTCGCGCGGTCCGAATTGAGCGAGGCAAGAACCACAGCATTCC
GCAGGCCTGCCTACCATTTTTCTCGCGGGAAAATGAAATGCTAGCTCTCT
CTGTTGTGTCTCAGGAACGAGTACAACGTGACGGGATTGTGCAACAAGAG
CTCCTGCCCTCTCGCGAACTCTCGTTACGCCACCATTCGTGAGCACGACG
GCATCTGCTACCTCTACATCAAGACAATCGAGCGCGCCCACACCCCCAAA
AATTTATGGGAAAAGATGAAGGCGAGGCTTCAAGTAGCGCGCTCTTCTTT
TGAGCTATACCGTTAGAGAGCTATTATAGCAAGAGTGCTGCTCTACAATG
TACCGTAGCTTTAGTCGCAAGTATGTTTTTGTTTTGCGGCGCCAAGAAGC
AGTAGTGCGCTCGCCCAAGTTCATGTCGCCGTCTTGACAGTTCAAAAGGT
TTGCAGATCATCACACGTTGTCATTGTTCCCCGACGCACTTTGACTCGCC
AAAAAAAAACTGTAACAATTACAGCTTTCCCGCAACTATGCCAAGGCCTT
GGAGCGCGTGTCGACGGAGCTTGAGTTTTTCCCGAAGCACCTCCAGCACA
GGAGCAAGCAGCGCCTGACCAAGATTCACCAGTACCTCATCCGGATGCGA
AAACTTAAGCTGAAGGCTAAGCCCAAGCTTGTCCCTATCAACCCCAAGGT
CGGAAGGATCGACGTTTTTTAGATTTTGTCTCAAAAATAAGAGCAAAAAT
ATAACCTAGTGTACCCCTTGTAGCAAGAGAGCAGCGCTCTACCGCCTAAA
ATAAACTTTACGTGACGTTCAGGGCTCGAAGAATGATATTCGTTTTCAGA
GCTAGCTGCGCCGCGGACTTTTTGTCGCTCGATTAGGTGGCGAAACGAGA
GACAATGAGAGAGAAAAAGGCGTTGCTGGCCGCGAAGCTCGAACGGTCGA
TCGAGGGGGAGCTACTGGAGCGACTGAAAAAGGGCACCTATGGCGACATT
TACAATTTCCCCGAGGTTCAATACGACAAGGCAAGTTGCGGACGCAGCGC
CCATGGGTGACGAACAACAATGTGCAATCTCGTCATCTTAAATGATGCCC
CCGGCGGCAGTGGGCGGAGCGGTGTTGTGTCTGGTATTTTTTTATTGATT
TTTTTATTGAATTCTCACATAAGCTGATGTCAAAATCCAGCCCGTGGTAT
GTACAATCGCGAAGAGTGAATAATTGACAAGTATTTGCGATTGTCAGGGA
TGCACGATCGACGAAGTAATAGGCCTTTGTCGACCACTCGAGGAAGTAAA
GCGACGCCTGAAGATGACCGTTACGACCTAATTCCGGTTCTACCGAACTG
ACTGAGTCGAACGTCGGTGTGCGAACGATGTTTCTTGTGGCTCGGTACTG
TCGGCACCTTGAGGTCTTTGTATTGTGTGGAGAAAATTGAGCTGTGGCGA
TGTTGAGAGCTCATTCAGTGACTTTCAAAACGACGCAGGACTGCGTTTTA
GCAGGCAATGCAGCCGTTTGTTGGTGTGACTATTAGGGTGTTGCCCAGCG
CATTCTTCCTTGGAGTTGAACTCGTTTAGGTGCCGAAAACACACTCTCTT
CCCCCTGTAACATTTGTACAACCAATCTCGGCAGGCACTGAGACAGGCAG
AAGACGAATACGCCGACCAAAATCCACAAGAAATGGAAGATGAAGAAGAG
GGCGAGGTGAAAGTATACTATTCTATTCGTGTTCGGTACCTGGTAGGATA
TTCCTCCTGTAGGTACTGCGCTTAAATTTTTTAATTAGGCGCCTTCCGCA
GTAAGGCGTCGCGGGTTTTTAGGTGGGGGGATGATGAAGCATCCCCGGCT
ATGCTCTGGAAAAAATATCTCTACTACCTTTGAATAAAAGATAAACATAT
TAAAAACCAGCAAGGAAAAAAACATTTTTATTGTTGGGTACCCATATCGC
TGGGGAATTTCCGCCGAAGGGCAACGAGCGGGGATGAACCAAAACAATCC
CCGGGTTTGAAAATACCTTAGATTGAGCCAAAAATTTCAGGGTGTCGTAA
TTTTGGGGTTAATGTCACGAATCCATGATTTTTTTGTTGTTTTCGTTTTT
GTTCTAGATATATCGACCCTGCCCGGAACAGCATTGACAAAAAATGACAC
TCAGCTTCAGGTTGTTCTTGAGGATACAGGAGCATAACTACCGGGCGTAT
CCTGGACACCTGGCTAAACCAGCCCCATGTGCTGGGGTTCCAACAGAACG
TGAAGACAACAATCCAGCGCATCAGCAGCTCGACTCGCCTCCGCCACCCT
ATCCCCTGCCATCCAGGTGGAGTACGTGGAAGACTTGGAGGAAGACGAAA
GCGACATTGAAGATGCCGCCGAGTGGGGGGGCTCTCACTGGGGAGCGCAA
ATCTCGGCGAGGGGTGAGCGAGGGCCGAGTGCCGAACGAGGAGACGAGAG
TGAAGAAGATGCGGACGATGACGACGGTGAAGTTATTCGCTGTGTGGAGG
CATTTGTGAAAAGTCATACGTGTAACGGCCACAGAGAGGGAAGAGTACCG
ACGCATGTTAAGCTTGGAATTATTATCAATATGTCGGGTTCGTCACGCGG
CAAAAAAAACAACTTAATTTCGACTCGATTCTGCTTTCTCTTAGGCCGGG
TCTTATCGGAATACAAAAATTTAAAATTCCAGACGATTTAAATTAAAATC
GGGCTCTGATTGGTCGAAAGCTAAAGAATGCCTAGCCTTCGTCCAATCAG
AGCCCGTTTTAACCCCTATGGAACTCGATCTGTTTTTTTACATACTAAAT
TCAGTATAAAACTTGAAATCCAGTTCCAAAAGGGTTAAATAGAAATCGGC
TGGAATTTAAACTTTTGTAACCCCGTTAATACCCGCCCTTAGCCCCGACG
CGTTTCCGTTCTTTCTTAACCGCAGACTCTTGCCTCCGAACCATTATAGG
TGATTCAAAAGCCGGCGAAGGACCGGACTTAATGGCAAAAAAGAAGCGAA
AGACGGGCGGCAGCGGCGAAGGGAAAAGGAAAGGGGCAGGGCGGGCTGAA
AGTGACGCGCCGAAACGACGAGGCTCTGCCAAGCGGTCGAAACCGTTGCA
TCCGTATGTGGAGGTGGAATACGAGGAGGAGACGGAAGACGCGGCCGCGG
AGAGCATGTCCTTTAATTGGTAGTTTGAATTACATCCTTCAGTCAGATAA
AACGTGCGAAACCCTCAAATATTTGTCTGTATTTTCTTTTTTCGTGTGCA
CGCTCGATTCGGCGTCGTCCAAACCTGACTTGACGGAGTTAGATTTGCCC
CGGGCTCTCTACAAATAGTACCAGGTACGACGTACCACACACATGAGGAG
ACCCGCTAGACTTGGCAAGTACCCTTGGTAGTCGATGGTACTGCTAAAAC
GCTTCGTGTGTGACAACTTACGGCGACATGGAGTTTCGAATCCGAACAGA
TCGGCCGTTGTTCAAGCTGCCAGGATCTACCGAAACGGAAACATTTCCAG
GAAGCCTTGTTGAGTTGGCGAGAAAAAACACAGGACCATGCTGGTGATTT
TAGTTTATACATCTTGTAACTGGAGCGCTTGAACTCAACAACAATTTGAT
TGCGCGGTAATCTTTACCTTGATACGCAAAACGGATAGTTGAGCGGGTAG
GGAGGTCGGCTGCCTCAAGAACGATCAATCACTTCGTTAAGGCACTTCAC
AACCCTCCTGGGCTACACTATCTACCGTTTCTAAACATACCGAGGCAACT
GCGAACGTATTCAAGATACTGAAGAAGAAGCTCACCCAGTGATGGTAGAC
TGTACGCGCAGTGCCCGTGAAAAATACAAGCATTTTGGACGTCCTTTACA
AGGACTCCGCTGCCTTCC
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Coding sequence (CDS) from alignment at H-elongata_contig6504:4763..9930-

>mRNA_H-elongata_contig6504.14093.1 ID=mRNA_H-elongata_contig6504.14093.1|Name=mRNA_H-elongata_contig6504.14093.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2040bp|location=Sequence derived from alignment at H-elongata_contig6504:4763..9930- (Himanthalia elongata Himel1 dioecious)
ATGCAGATGCAGAGTGACGATGTCATCTGGCAAGTGTTGAACAATCAATT
CTGCTCGTTCAAGAGCAAGGTCGCCAAGGAACAAACCTTCTGCAGAGTGA
CGATGTCATCTGGCAAGTGTTGAACAATCAATTCTGCTCGTTCAAGAGCA
AGGTCGCCAAGGAACAAACCTTCTGCAGGAACGAGTACAACGTGACGGGA
TTGTGCAACAAGAGCTCCTGCCCTCTCGCGAACTCTCGTTACGCCACCAT
TCGTGAGCACGACGGCATCTGCTACCTCTACATCAAGACAATCGAGCGCG
CCCACACCCCCAAAAATTTATGGGAAAAGATGAAGGAACGAGTACAACGT
GACGGGATTGTGCAACAAGAGCTCCTGCCCTCTCGCGAACTCTCGTTACG
CCACCATTCGTGAGCACGACGGCATCTGCTACCTCTACATCAAGACAATC
GAGCGCGCCCACACCCCCAAAAATTTATGGGAAAAGATGAAGCTTTCCCG
CAACTATGCCAAGGCCTTGGAGCGCGTGTCGACGGAGCTTGAGTTTTTCC
CGAAGCACCTCCAGCACAGGAGCAAGCAGCGCCTGACCAAGATTCACCAG
TACCTCATCCGGATGCGAAAACTTAAGCTGAAGGCTAAGCCCAAGCTTGT
CCCTATCAACCCCAAGCTTTCCCGCAACTATGCCAAGGCCTTGGAGCGCG
TGTCGACGGAGCTTGAGTTTTTCCCGAAGCACCTCCAGCACAGGAGCAAG
CAGCGCCTGACCAAGATTCACCAGTACCTCATCCGGATGCGAAAACTTAA
GCTGAAGGCTAAGCCCAAGCTTGTCCCTATCAACCCCAAGGTGGCGAAAC
GAGAGACAATGAGAGAGAAAAAGGCGTTGCTGGCCGCGAAGCTCGAACGG
TCGATCGAGGGGGAGCTACTGGAGCGACTGAAAAAGGGCACCTATGGCGA
CATTTACAATTTCCCCGAGGTTCAATACGACAAGGTGGCGAAACGAGAGA
CAATGAGAGAGAAAAAGGCGTTGCTGGCCGCGAAGCTCGAACGGTCGATC
GAGGGGGAGCTACTGGAGCGACTGAAAAAGGGCACCTATGGCGACATTTA
CAATTTCCCCGAGGTTCAATACGACAAGGCACTGAGACAGGCAGAAGACG
AATACGCCGACCAAAATCCACAAGAAATGGAAGATGAAGAAGAGGGCGAG
GCACTGAGACAGGCAGAAGACGAATACGCCGACCAAAATCCACAAGAAAT
GGAAGATGAAGAAGAGGGCGAGGTGGAGTACGTGGAAGACTTGGAGGAAG
ACGAAAGCGACATTGAAGATGCCGCCGAGTGGGGGGGCTCTCACTGGGGA
GCGCAAATCTCGGCGAGGGGTGAGCGAGGGCCGAGTGCCGAACGAGGAGA
CGAGAGTGAAGAAGATGCGGACGATGACGACGGTGGAGTACGTGGAAGAC
TTGGAGGAAGACGAAAGCGACATTGAAGATGCCGCCGAGTGGGGGGGCTC
TCACTGGGGAGCGCAAATCTCGGCGAGGGGTGAGCGAGGGCCGAGTGCCG
AACGAGGAGACGAGAGTGAAGAAGATGCGGACGATGACGACGGTGATTCA
AAAGCCGGCGAAGGACCGGACTTAATGGCAAAAAAGAAGCGAAAGACGGG
CGGCAGCGGCGAAGGGAAAAGGAAAGGGGCAGGGCGGGCTGAAAGTGACG
CGCCGAAACGACGAGGCTCTGCCAAGCGGTCGAAACCGTTGCATCCGTAT
GTGGAGGTGGAATACGAGGAGGAGACGGAAGACGCGGCCGCGGAGAGCAT
GTCCTTTAATTGGTAGGTGATTCAAAAGCCGGCGAAGGACCGGACTTAAT
GGCAAAAAAGAAGCGAAAGACGGGCGGCAGCGGCGAAGGGAAAAGGAAAG
GGGCAGGGCGGGCTGAAAGTGACGCGCCGAAACGACGAGGCTCTGCCAAG
CGGTCGAAACCGTTGCATCCGTATGTGGAGGTGGAATACGAGGAGGAGAC
GGAAGACGCGGCCGCGGAGAGCATGTCCTTTAATTGGTAG
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