mRNA_H-elongata_contig118217.1406.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118217.1406.1
Unique NamemRNA_H-elongata_contig118217.1406.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A6D2JNC7_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JNC7_9BRAS)

HSP 1 Score: 90.9 bits (224), Expect = 1.160e-20
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 1
Query:  106 PRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDG-KVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 447
            PR+  QA +SP W +W  A K E   ++ N  +  + +P    VVG+K LY  K G  G +++++KCRLVAQGF Q EGV Y E +SP     S R++LS    RD EL   D +
Sbjct:    4 PRSMAQARKSPNWKEWDNASKEEWSSLMKNHTWDLIDKPDGARVVGSKWLYTIKSGIPGVELKRFKCRLVAQGFSQTEGVDYNEIFSPVVKHVSIRIMLSAVVNRDYELEQMDVK 118          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 95.9 bits (237), Expect = 3.730e-20
Identity = 53/139 (38.13%), Postives = 83/139 (59.71%), Query Frame = 1
Query:   31 ADVEDSLACDGGGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 447
            A+V D +    G + A +A++ + +P++  +AM  P    W+ A   E+   V   +Y +V RP+D+ VVG K ++  K G DG++EKYK R+VA+GF Q+EGV YT+ ++P    AS R LL+ AA  D E+   D +
Sbjct:  262 AEVRDGV----GAEHAKNASI-LDDPQSYEEAMSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVK 395          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 95.9 bits (237), Expect = 3.960e-20
Identity = 46/115 (40.00%), Postives = 71/115 (61.74%), Query Frame = 1
Query:  103 EPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 447
            +P +   AM      +WRKA + E+       V+++V RP+D+ ++G+K ++  K G DG+VEKYK RLVAQGF Q+EG+ Y E ++P   + S R+LL+ AA  D E+   D +
Sbjct:  994 DPLSYVDAMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVK 1108          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A6D2JI50_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JI50_9BRAS)

HSP 1 Score: 90.9 bits (224), Expect = 3.530e-19
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 1
Query:  106 PRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDG-KVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 447
            PR+  QA +SP W +W  A K E   ++ N  +  + +P    VVG+K LY  K G  G +++++KCRLVAQGF Q EGV Y E +SP     S R++LS    RD EL   D +
Sbjct:    4 PRSMAQARKSPNWKEWDNASKEEWSSLMKNHTWDLIDKPDGARVVGSKWLYTIKSGIPGVELKRFKCRLVAQGFSQTEGVDYNEIFSPVVKHVSIRIMLSAVVNRDYELEQMDVK 118          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A1V9YIL7_9STRA (RNA-dependent DNA polymerase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIL7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.200e-18
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 1
Query:   16 PAIEEADVEDSL--ACDGGGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFD 441
            PA+  +D    L  A +G  Q  M  T  + EPRN  +A+  P   +W+ A + E+  ++ N  ++ VA+P D  +VG K +Y  K   +G+VE++K RLVAQGF Q  GV +TE +SP     S R+LL  A   D  + H D
Sbjct: 1212 PALRRSDRLQHLVPAAEGDAQAMMVTT--VNEPRNPSEALNGPQAKEWQTAMQSEIDNLIQNGTWELVAKPTDTNIVGHKWVYKVKFDSNGEVERFKARLVAQGFSQRYGVDFTETFSPVIRQPSVRILLVIATHLDVPVLHLD 1353          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A7S3Y1L1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1L1_HETAK)

HSP 1 Score: 90.1 bits (222), Expect = 2.170e-18
Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 1
Query:   64 GGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFD 441
            G Q+ +  T   Q P N   A  SP W  WR+A   E   ++ + V++ V +P    +VG + +  +K   DG + KYK RL AQG+ QIEGV YT  +SP  S+AS R +L+ AA+ D E+   D
Sbjct:  217 GHQVCLLGTHSEQNPWNLAHAQRSPDWMRWREAVADEYDSLLRHNVWELVDKPSGANIVGCRWILAKKYDADGNLSKYKARLCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMD 342          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 90.1 bits (222), Expect = 3.990e-18
Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 1
Query:   64 GGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFD 441
            G Q+ +  T   Q P N   A  SP W  WR+A   E   ++ + V++ V +P    +VG + +  +K   DG + KYK RL AQG+ QIEGV YT  +SP  S+AS R +L+ AA+ D E+   D
Sbjct:  470 GHQVCLLGTHSEQNPWNLAHAQRSPDWMRWREAVADEYDSLLRHNVWELVDKPSGANIVGCRWILAKKYDADGNLSKYKARLCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMD 595          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A1V9YH81_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YH81_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.140e-18
Identity = 53/134 (39.55%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   40 EDSLACDGGGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFD 441
            E   A  G  Q+ M  T  I+EPRN R+A+  P   +W  A + E+  ++ N  ++ VA+P    +VG K +Y  K    G+VE++K RLVAQGF Q  GV +TE +SP     S R+LL  AA  D  + H D
Sbjct: 1097 EHMTATGGEAQVVMATT--IKEPRNPREALAGPQAKEWETAMQAEIDNLIQNGTWELVAKPVGVNIVGHKWVYKIKFDNVGEVERFKARLVAQGFSQRYGVDFTETFSPVIRQPSVRVLLVLAAILDVPVLHLD 1228          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A6S7GWB8_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GWB8_PARCT)

HSP 1 Score: 89.7 bits (221), Expect = 5.200e-18
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = 1
Query:   88 TLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 447
            T DI EPRN  +A  +     W+KA   E   +++N  ++ V  P DK +VG++ ++  K   DG VEK+K RLVAQG+ Q EG+ Y E +SP     S R LL+ A   D E+   D +
Sbjct:  547 TADINEPRNISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVK 666          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A2R6NZJ8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NZJ8_9APHY)

HSP 1 Score: 89.7 bits (221), Expect = 5.560e-18
Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = 1
Query:   52 ACDGGGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 447
            A   G + A  A+LD + P   ++AM  P  + W+ AE  E+   V   ++ +V +PK + +V  K +Y  K G DG+V KYK RLVA+GF QIEGV Y E ++P     S R LL+ AA  + E+   D +
Sbjct:  952 AGQSGDEHARKASLD-EPPLTHKEAMARPDASQWKLAEIAEIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMDVK 1082          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2JNC7_9BRAS1.160e-2041.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1C7MSU6_GRIFR3.730e-2038.13Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK3.960e-2040.00Integrase catalytic domain-containing protein (Fra... [more]
A0A6D2JI50_9BRAS3.530e-1941.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1V9YIL7_9STRA1.200e-1837.50RNA-dependent DNA polymerase n=1 Tax=Achlya hypogy... [more]
A0A7S3Y1L1_HETAK2.170e-1838.89Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK3.990e-1838.89Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A1V9YH81_9STRA4.140e-1839.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A6S7GWB8_PARCT5.200e-1839.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2R6NZJ8_9APHY5.560e-1838.64Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118217contigH-elongata_contig118217:44..493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score85.1
Seed ortholog evalue3e-14
Seed eggNOG ortholog7425.NV17647-PA
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size450
Cds size450
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.8342392-CDS-H-elongata_contig118217:43..4931622929689.8342392-CDS-H-elongata_contig118217:43..493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118217 44..493 -
1691679119.8578954-CDS-H-elongata_contig118217:43..4931691679119.8578954-CDS-H-elongata_contig118217:43..493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118217 44..493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118217.1406.1prot_H-elongata_contig118217.1406.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118217 44..493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118217.1406.1

>prot_H-elongata_contig118217.1406.1 ID=prot_H-elongata_contig118217.1406.1|Name=mRNA_H-elongata_contig118217.1406.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
MHCFLPAIEEADVEDSLACDGGGQMAMHATLDIQEPRNRRQAMESPGWND
WRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYK
CRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE*
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mRNA from alignment at H-elongata_contig118217:44..493-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118217.1406.1 ID=mRNA_H-elongata_contig118217.1406.1|Name=mRNA_H-elongata_contig118217.1406.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=450bp|location=Sequence derived from alignment at H-elongata_contig118217:44..493- (Himanthalia elongata Himel1 dioecious)
ATGCATTGTTTCTTGCCGGCGATCGAAGAAGCCGACGTGGAGGATTCGTT GGCGTGTGACGGCGGGGGGCAGATGGCCATGCACGCGACGCTAGATATAC AGGAACCGAGGAACCGGCGGCAGGCGATGGAATCGCCGGGATGGAACGAT TGGCGGAAAGCAGAGAAAATAGAGATGCGTGGCATGGTCGATAACTGCGT TTATAAGCAGGTGGCTCGGCCGAAGGATAAGCTTGTGGTTGGCACGAAAA TGCTCTACAACCGAAAAGTCGGACAGGACGGCAAGGTCGAGAAATACAAG TGCCGGCTTGTAGCTCAAGGGTTCTGGCAGATAGAGGGTGTGCACTATAC GGAGAAATACTCGCCCACGCCATCGACCGCATCAACCCGGATGCTTTTGT CCACAGCAGCGGCCAGGGACGGTGAGCTGCGCCATTTCGACGCGGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig118217:44..493-

>mRNA_H-elongata_contig118217.1406.1 ID=mRNA_H-elongata_contig118217.1406.1|Name=mRNA_H-elongata_contig118217.1406.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig118217:44..493- (Himanthalia elongata Himel1 dioecious)
ATGCATTGTTTCTTGCCGGCGATCGAAGAAGCCGACGTGGAGGATTCGTT
GGCGTGTGACGGCGGGGGGCAGATGGCCATGCACGCGACGCTAGATATAC
AGGAACCGAGGAACCGGCGGCAGGCGATGGAATCGCCGGGATGGAACGAT
TGGCGGAAAGCAGAGAAAATAGAGATGCGTGGCATGGTCGATAACTGCGT
TTATAAGCAGGTGGCTCGGCCGAAGGATAAGCTTGTGGTTGGCACGAAAA
TGCTCTACAACCGAAAAGTCGGACAGGACGGCAAGGTCGAGAAATACAAG
TGCCGGCTTGTAGCTCAAGGGTTCTGGCAGATAGAGGGTGTGCACTATAC
GGAGAAATACTCGCCCACGCCATCGACCGCATCAACCCGGATGCTTTTGT
CCACAGCAGCGGCCAGGGACGGTGAGCTGCGCCATTTCGACGCGGAGTAG
ATGCATTGTTTCTTGCCGGCGATCGAAGAAGCCGACGTGGAGGATTCGTT
GGCGTGTGACGGCGGGGGGCAGATGGCCATGCACGCGACGCTAGATATAC
AGGAACCGAGGAACCGGCGGCAGGCGATGGAATCGCCGGGATGGAACGAT
TGGCGGAAAGCAGAGAAAATAGAGATGCGTGGCATGGTCGATAACTGCGT
TTATAAGCAGGTGGCTCGGCCGAAGGATAAGCTTGTGGTTGGCACGAAAA
TGCTCTACAACCGAAAAGTCGGACAGGACGGCAAGGTCGAGAAATACAAG
TGCCGGCTTGTAGCTCAAGGGTTCTGGCAGATAGAGGGTGTGCACTATAC
GGAGAAATACTCGCCCACGCCATCGACCGCATCAACCCGGATGCTTTTGT
CCACAGCAGCGGCCAGGGACGGTGAGCTGCGCCATTTCGACGCGGAGTAG
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