mRNA_H-elongata_contig64570.14049.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64570.14049.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 215 bits (548), Expect = 2.050e-70 Identity = 113/123 (91.87%), Postives = 119/123 (96.75%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKSKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 369
M+GKGKGGRG KKST+RS+KAGLQFPVGR+GRFLKK KY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct: 1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_H-elongata_contig64570.14049.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 213 bits (543), Expect = 6.980e-69 Identity = 112/122 (91.80%), Postives = 118/122 (96.72%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKSKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 366
M+GKGKGGRG KKST+RS+KAGLQFPVGR+GRFLKK KY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct: 46 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_H-elongata_contig64570.14049.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 207 bits (526), Expect = 7.080e-67 Identity = 109/119 (91.60%), Postives = 115/119 (96.64%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKSKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M+GKGKGGRG KKSTS+SSKAGLQFPV RIGR+LK+ KY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-elongata_contig64570.14049.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 207 bits (526), Expect = 3.630e-66 Identity = 109/119 (91.60%), Postives = 115/119 (96.64%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKSKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M+GKGKGGRG KKSTS+SSKAGLQFPV RIGR+LK+ KY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 52 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_H-elongata_contig64570.14049.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 202 bits (515), Expect = 2.000e-65 Identity = 106/119 (89.08%), Postives = 113/119 (94.96%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKSKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M+GKGKGGRG KK TSRS+KAGLQFPVGRIGRF+K+ KYS RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG-KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-elongata_contig64570.14049.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 201 bits (510), Expect = 2.290e-64 Identity = 100/121 (82.64%), Postives = 115/121 (95.04%), Query Frame = 1
Query: 7 GKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKSKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 369
GKGKGGRGDKK+ S+S+KAGLQFPVGR+GRFLK+ +Y++RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RI+PRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK K
Sbjct: 5 GKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125
BLAST of mRNA_H-elongata_contig64570.14049.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA) HSP 1 Score: 199 bits (505), Expect = 9.240e-64 Identity = 105/121 (86.78%), Postives = 112/121 (92.56%), Query Frame = 1
Query: 1 MTGKGKGGRGD--KKSTSRSSKAGLQFPVGRIGRFLKKSKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M GKGKGGRG KKSTS+SSKAGLQFPV R+GRFLK +Y++RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct: 1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKK 121
BLAST of mRNA_H-elongata_contig64570.14049.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 198 bits (504), Expect = 1.050e-63 Identity = 100/119 (84.03%), Postives = 113/119 (94.96%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKSKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M+GKGKGGRG+KKST+ S+KAGLQFPVGRIGR+L++ KY+ R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK
Sbjct: 1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119
BLAST of mRNA_H-elongata_contig64570.14049.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 198 bits (504), Expect = 1.050e-63 Identity = 102/122 (83.61%), Postives = 113/122 (92.62%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKSKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 366
M+GKGKGGRG KKST+ S+KAGLQFPVGRIGR+L++ KY+ R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK K
Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_H-elongata_contig64570.14049.1 vs. uniprot
Match: B7FWQ2_PHATC (Histone H2A n=9 Tax=Bacillariophyta TaxID=2836 RepID=B7FWQ2_PHATC) HSP 1 Score: 196 bits (498), Expect = 9.780e-63 Identity = 99/117 (84.62%), Postives = 111/117 (94.87%), Query Frame = 1
Query: 7 GKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKSKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
GKGKGGRGDKKST+ S+KAGLQFPVGRIGR+L++ KY+ R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIA+GGVLPNIHA+LLPKK
Sbjct: 5 GKGKGGRGDKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIAAGGVLPNIHAILLPKK 121 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64570.14049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64570.14049.1 >prot_H-elongata_contig64570.14049.1 ID=prot_H-elongata_contig64570.14049.1|Name=mRNA_H-elongata_contig64570.14049.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKSKYSQRVGAGAPVYback to top mRNA from alignment at H-elongata_contig64570:1667..2038+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64570.14049.1 ID=mRNA_H-elongata_contig64570.14049.1|Name=mRNA_H-elongata_contig64570.14049.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig64570:1667..2038+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64570:1667..2038+ >mRNA_H-elongata_contig64570.14049.1 ID=mRNA_H-elongata_contig64570.14049.1|Name=mRNA_H-elongata_contig64570.14049.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig64570:1667..2038+ (Himanthalia elongata Himel1 dioecious)back to top |