mRNA_H-elongata_contig64551.14045.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64551.14045.1
Unique NamemRNA_H-elongata_contig64551.14045.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64551.14045.1 vs. uniprot
Match: D7FII4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII4_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 1.680e-101
Identity = 181/240 (75.42%), Postives = 195/240 (81.25%), Query Frame = 1
Query:    1 KVSFTEFYQMATGGNLPPPGLGXXXXXXXXXXXXXVVGIAVAATAPLGQNVVQQRNKKKQALNEFSRDNNIKPESIKKAYKRFQATDNDSSGMIDYTEFCEIMQVDPSPQCEGVFQLFXXXXXXXXXXXXFLVALTNFAGASKDDKLKFAFMIFDEDGNGVITKQEARNTPHPPTPIITLGCLTRILKANHMAQTEAEVARKTDTIMAQADKDGDGIITFDEFVIVCKKFPNILFPSTGK 720
            +VSFTEFY+M TGGN       XXXXXXXXXXXXX      A TAPLGQNVVQQRNKKKQA+++F+RDNNIKPESIKKAYKRFQATD DS+GMIDYTEFCEIMQVDPSPQCEG+FQLF            F+++LTNFAGASKDDKLKFAFMIFDEDGNGVITKQE                L RILKANHMAQ+EAEVARKTDTIMAQADKDGDG++TFDEFVIVCKKFPNILFPSTGK
Sbjct:  540 QVSFTEFYEMVTGGNSXXXXXXXXXXXXXXXXXXXXXXXXXATTAPLGQNVVQQRNKKKQAMDDFARDNNIKPESIKKAYKRFQATDKDSTGMIDYTEFCEIMQVDPSPQCEGLFQLFDGDRSGQIDVREFMISLTNFAGASKDDKLKFAFMIFDEDGNGVITKQE----------------LARILKANHMAQSEAEVARKTDTIMAQADKDGDGVVTFDEFVIVCKKFPNILFPSTGK 763          
BLAST of mRNA_H-elongata_contig64551.14045.1 vs. uniprot
Match: A0A6H5JD51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD51_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 1.490e-92
Identity = 163/221 (73.76%), Postives = 178/221 (80.54%), Query Frame = 1
Query:    1 KVSFTEFYQMATGGNLPPPGLGXXXXXXXXXXXXXVVGIAVAATAPLGQNVVQQRNKKKQALNEFSRDNNIKPESIKKAYKRFQATDNDSSGMIDYTEFCEIMQVDPSPQCEGVFQLFXXXXXXXXXXXXFLVALTNFAGASKDDKLKFAFMIFDEDGNGVITKQEARNTPHPPTPIITLGCLTRILKANHMAQTEAEVARKTDTIMAQADKDGDGIITFD 663
            +VSFTEFY+M TGGN P     XXXXXXXXXXXXX     +A TAPLGQNVVQQRNKKKQA+++F+RDNNIKPESIKKAYKRFQATD DS+GMIDYTEFCEIMQVDPSPQCEG+FQLF            F+++LTNFAGASKDDKLKFAFMIFDEDGNGVITKQE                L RILKANHMAQ+EAEVARKTDTIMAQADKDGDG++TFD
Sbjct:  122 QVSFTEFYEMVTGGNSPXXXXXXXXXXXXXXXXXXXXXXXLATTAPLGQNVVQQRNKKKQAMDDFARDNNIKPESIKKAYKRFQATDKDSTGMIDYTEFCEIMQVDPSPQCEGLFQLFDGDRSGQIDVREFMISLTNFAGASKDDKLKFAFMIFDEDGNGVITKQE----------------LARILKANHMAQSEAEVARKTDTIMAQADKDGDGVVTFD 326          
BLAST of mRNA_H-elongata_contig64551.14045.1 vs. uniprot
Match: A0A835ZJR9_9STRA (Putative calcineurin subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJR9_9STRA)

HSP 1 Score: 276 bits (705), Expect = 4.370e-87
Identity = 151/248 (60.89%), Postives = 174/248 (70.16%), Query Frame = 1
Query:    1 KVSFTEFYQMATGGNLPPPGLGXXXXXXXXXXXXXVVGIAVAATAP-LGQNVVQQRNKKKQALNEFSRDNNIKPESIKKAYKRFQATDNDSSGMIDYTEFCEIMQVDPSPQCEGVFQLFXXXXXXXXXXXX--FLVALTNFAGASK-----DDKLKFAFMIFDEDGNGVITKQEARNTPHPPTPIITLGCLTRILKANHMAQTEAEVARKTDTIMAQADKDGDGIITFDEFVIVCKKFPNILFPSTGK 720
            +VSF EFY M TGG  PPPGLG                + +A T    G NVVQQRN KK AL++F+RDNNIKPESIKKAYKRFQATD DS+GMIDYTEFCE++QVDPSPQCEGVFQLF              F+++L +++GA+K     +DKLKFAFM+FDEDGNGVITK E                L RILKANHMA ++AEVARK DTIM QADKDGDG++TFDEFV+V KKFPNILFPS GK
Sbjct:  275 QVSFDEFYGMVTGGRKPPPGLGGAARPAAGTAPSMGGTMVLAGTMQQAGPNVVQQRNAKKAALDDFARDNNIKPESIKKAYKRFQATDKDSTGMIDYTEFCEVLQVDPSPQCEGVFQLFDYDRIRSGQIDVREFMISLAHYSGATKASQHREDKLKFAFMVFDEDGNGVITKAE----------------LVRILKANHMATSDAEVARKADTIMNQADKDGDGVVTFDEFVLVAKKFPNILFPSAGK 506          
BLAST of mRNA_H-elongata_contig64551.14045.1 vs. uniprot
Match: A0A8J2S3Z5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S3Z5_9STRA)

HSP 1 Score: 265 bits (678), Expect = 2.990e-82
Identity = 155/237 (65.40%), Postives = 175/237 (73.84%), Query Frame = 1
Query:    1 KVSFTEFYQMATGGNLPPPGLGXXXXXXXXXXXXXVVGIAVAATAPLGQNVVQQRNKKKQALNEFSRDNNIKPESIKKAYKRFQATDNDSSGMIDYTEFCEIMQVDPSPQCEGVFQLFXXXXXXXXXXXXFLVALTNFAGASKDDKLKFAFMIFDEDGNGVITKQEARNTPHPPTPIITLGCLTRILKANHMAQTEAEVARKTDTIMAQADKDGDGIITFDEFVIVCKKFPNILFPS 711
            +VSFTEF++M TGG  PP GLG               G + +A  P GQ+VV  RN KK AL+EF+RDNN+KPESIKKAYKRFQATD D SGMIDYTEFCE++Q DPSPQ E +    XXXXXXXXXXXX ++AL+NF GA KDDKLKFAFMIFDEDGNGVITK E                LTRIL+ANHMA  +AEVARK DTIM QADKDGDG++TFDEFVIV KKFPNILFP+
Sbjct:  360 QVSFTEFFEMVTGGRQPPAGLGGGGRMGAP-------GASASAAPPTGQSVVAARNAKKAALDEFARDNNLKPESIKKAYKRFQATDKDKSGMIDYTEFCEVLQCDPSPQGERLXXXXXXXXXXXXXXXXXMIALSNFTGAGKDDKLKFAFMIFDEDGNGVITKGE----------------LTRILRANHMASCDAEVARKADTIMQQADKDGDGVVTFDEFVIVSKKFPNILFPA 573          
BLAST of mRNA_H-elongata_contig64551.14045.1 vs. uniprot
Match: A0A6S8C5R6_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8C5R6_9STRA)

HSP 1 Score: 266 bits (680), Expect = 2.000e-81
Identity = 154/240 (64.17%), Postives = 175/240 (72.92%), Query Frame = 1
Query:    1 KVSFTEFYQMATGGNLPPPGLGXXXXXXXXXXXXXVVGIAVAATAPLGQNVVQQRNKKKQALNEFSRDNNIKPESIKKAYKRFQATDNDSSGMIDYTEFCEIMQVDPSPQCEGVFQLFXXXXXXXXXXXXFLVALTNFAGASKDDKLKFAFMIFDEDGNGVITKQEARNTPHPPTPIITLGCLTRILKANHMAQTEAEVARKTDTIMAQADKDGDGIITFDEFVIVCKKFPNILFPSTGK 720
            +VSF EF+ M TGG  PPPGLG             V      A  P GQ+VV  RN KK AL++F+RD N+KPESIKK+YKRFQATD D SGMIDYTEFCEI+QVDPSPQ E +    XXXXXXXXXXXX ++AL+NF GA+KDDKLKFAFMIFDEDGNGVITK E                LTRIL+ANHMA ++AEVARK +TIM QADKDGDG++TFDEFVIV KKFPNILFP+  K
Sbjct:  471 QVSFPEFFDMVTGGRQPPPGLGNSASNVNVAGVKGVKNTTAGAQPPTGQSVVAARNAKKSALDDFARDCNLKPESIKKSYKRFQATDKDKSGMIDYTEFCEILQVDPSPQGERLXXXXXXXXXXXXXXXXXMIALSNFTGATKDDKLKFAFMIFDEDGNGVITKGE----------------LTRILRANHMASSDAEVARKAETIMQQADKDGDGVVTFDEFVIVSKKFPNILFPAMSK 694          
BLAST of mRNA_H-elongata_contig64551.14045.1 vs. uniprot
Match: A0A7S2SI02_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SI02_9STRA)

HSP 1 Score: 259 bits (661), Expect = 2.130e-81
Identity = 165/237 (69.62%), Postives = 182/237 (76.79%), Query Frame = 1
Query:    1 KVSFTEFYQMATGGNLPPPGLGXXXXXXXXXXXXXVVGIAVAATAPLGQNVVQQRNKKKQALNEFSRDNNIKPESIKKAYKRFQATDNDSSGMIDYTEFCEIMQVDPSPQCEGVFQLFXXXXXXXXXXXXFLVALTNFAGASKDDKLKFAFMIFDEDGNGVITKQEARNTPHPPTPIITLGCLTRILKANHMAQTEAEVARKTDTIMAQADKDGDGIITFDEFVIVCKKFPNILFPS 711
            +V+F EFY+M T G  PPPGLG XXXXXXXXXXXX          P G +VV QRN KK AL+EF+RDNN+KPESIKKA+KRFQATD D SGMIDYTEFCEI+QVDPSPQ E V    XXXXXXXXXXXX ++AL NF GA KDDKLKF+FMIFDEDGNGVITK E                LTRILKANHMA  +AEVARK DTIM QADKDGDG+++FDEFVIV KKFPNILFP+
Sbjct:  209 QVAFDEFYEMVTNGKSPPPGLGGXXXXXXXXXXXXXXXXP-----PTGASVVAQRNAKKTALDEFARDNNLKPESIKKAFKRFQATDKDKSGMIDYTEFCEILQVDPSPQGEKVXXXXXXXXXXXXXXXXXMIALANFTGAGKDDKLKFSFMIFDEDGNGVITKDE----------------LTRILKANHMASNDAEVARKADTIMTQADKDGDGVVSFDEFVIVSKKFPNILFPA 424          
BLAST of mRNA_H-elongata_contig64551.14045.1 vs. uniprot
Match: A0A7S3M8S8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8S8_9STRA)

HSP 1 Score: 256 bits (653), Expect = 5.460e-80
Identity = 144/237 (60.76%), Postives = 166/237 (70.04%), Query Frame = 1
Query:    1 KVSFTEFYQMATGGNLPPPGLGXXXXXXXXXXXXXVVGIAVAATAPLGQNVVQQRNKKKQALNEFSRDNNIKPESIKKAYKRFQATDNDSSGMIDYTEFCEIMQVDPSPQCEGVFQLFXXXXXXXXXXXXFLVALTNFAGASKDDKLKFAFMIFDEDGNGVITKQEARNTPHPPTPIITLGCLTRILKANHMAQTEAEVARKTDTIMAQADKDGDGIITFDEFVIVCKKFPNILFPS 711
            +VS+ EFY M TGG   P GLG       XXXXXX            GQNVVQ RN KK AL EF+++NN+KPESIKKAYKRFQATD D SG++DYTEFCEI+QVDP+P CE VF+L+            FL+A++N+ GA K+DKLKFAFM FDEDGNGVITK E                L +ILK+NHMA  +AEVARK DTIMAQADKDGDG+ITFDEFVIV KKFPNILFP+
Sbjct:  228 QVSWDEFYSMVTGGKKAPAGLGIEAKGGAXXXXXXXXXXXT------GQNVVQARNAKKAALEEFAKENNLKPESIKKAYKRFQATDKDKSGVVDYTEFCEILQVDPAPLCETVFRLYDYDKTGQIDAREFLIAVSNYTGAGKEDKLKFAFMSFDEDGNGVITKAE----------------LLKILKSNHMASHDAEVARKADTIMAQADKDGDGVITFDEFVIVSKKFPNILFPA 442          
BLAST of mRNA_H-elongata_contig64551.14045.1 vs. uniprot
Match: A0A2D4BEP0_PYTIN (Calcineurin subunit B, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEP0_PYTIN)

HSP 1 Score: 257 bits (657), Expect = 2.050e-79
Identity = 155/237 (65.40%), Postives = 180/237 (75.95%), Query Frame = 1
Query:    1 KVSFTEFYQMATGGNLPPPGLGXXXXXXXXXXXXXVVGIAVAATAPLGQNVVQQRNKKKQALNEFSRDNNIKPESIKKAYKRFQATDNDSSGMIDYTEFCEIMQVDPSPQCEGVFQLFXXXXXXXXXXXXFLVALTNFAGASKDDKLKFAFMIFDEDGNGVITKQEARNTPHPPTPIITLGCLTRILKANHMAQTEAEVARKTDTIMAQADKDGDGIITFDEFVIVCKKFPNILFPS 711
            +VSF EFY M T G  PPPGLG      XXXXXXX       +TA +G   +Q RN++K AL EF+RDN IKPES+KKAYKRFQATD D SG IDY+EFCE++QVDPSPQCE VF   XXXXXXXXXXXXF++AL+NF+GA K++KLKFAFM+FDEDGNGVIT+QE                L +ILKANHMA +EAEVARK DTIM+Q DKDGDG+I+FDEF IV KKFPNILFP+
Sbjct:  326 QVSFDEFYAMVTKGKQPPPGLGVPAAGGXXXXXXXXXX----STAAVGAQAIQLRNERKTALEEFARDNGIKPESVKKAYKRFQATDKDGSGQIDYSEFCEVLQVDPSPQCEKVFXXXXXXXXXXXXXXXFMIALSNFSGAEKEEKLKFAFMVFDEDGNGVITRQE----------------LMKILKANHMASSEAEVARKADTIMSQGDKDGDGVISFDEFSIVSKKFPNILFPA 542          
BLAST of mRNA_H-elongata_contig64551.14045.1 vs. uniprot
Match: A0A6G0WVU7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WVU7_9STRA)

HSP 1 Score: 246 bits (629), Expect = 3.460e-79
Identity = 143/239 (59.83%), Postives = 169/239 (70.71%), Query Frame = 1
Query:    1 KVSFTEFYQMATGGNLPPPGLGXXXXXXXXXXXXXVVGIAVAATAPLG--QNVVQQRNKKKQALNEFSRDNNIKPESIKKAYKRFQATDNDSSGMIDYTEFCEIMQVDPSPQCEGVFQLFXXXXXXXXXXXXFLVALTNFAGASKDDKLKFAFMIFDEDGNGVITKQEARNTPHPPTPIITLGCLTRILKANHMAQTEAEVARKTDTIMAQADKDGDGIITFDEFVIVCKKFPNILFPS 711
            +V+F EFY+M TGG  PP GL              V   A AA AP     + +Q RN++K AL EF++DNNIK ES+KKA+KRFQATD D SG IDYTEFCEIM VDPSPQCE +FQ  XXXXXXXXX   FL+AL+NF GA K++KLKFAFM+FD+DGNGV++K E                L +ILKANHMA  E+EVARK DTIM+Q DKDGDG+I+FDEF IV KKFPNILFP+
Sbjct:   12 QVAFDEFYKMVTGGKEPPAGL-----------YRPVSDDAAAAAAPTSGAASSIQLRNERKNALEEFAQDNNIKAESVKKAFKRFQATDKDGSGQIDYTEFCEIMLVDPSPQCEKLFQXXXXXXXXXXXVREFLIALSNFCGAEKEEKLKFAFMVFDDDGNGVLSKME----------------LMKILKANHMASNESEVARKADTIMSQGDKDGDGVISFDEFAIVSKKFPNILFPA 223          
BLAST of mRNA_H-elongata_contig64551.14045.1 vs. uniprot
Match: G4Z244_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4Z244_PHYSP)

HSP 1 Score: 254 bits (649), Expect = 6.540e-79
Identity = 146/237 (61.60%), Postives = 171/237 (72.15%), Query Frame = 1
Query:    1 KVSFTEFYQMATGGNLPPPGLGXXXXXXXXXXXXXVVGIAVAATAPLGQNVVQQRNKKKQALNEFSRDNNIKPESIKKAYKRFQATDNDSSGMIDYTEFCEIMQVDPSPQCEGVFQLFXXXXXXXXXXXXFLVALTNFAGASKDDKLKFAFMIFDEDGNGVITKQEARNTPHPPTPIITLGCLTRILKANHMAQTEAEVARKTDTIMAQADKDGDGIITFDEFVIVCKKFPNILFPS 711
            +VSF EFY M T G  PPPGLG               G A    A  G   +Q RN++K AL EF+RDN IKPES+KKAYKRFQATD D SG IDY+EFCE++QVDPSPQCE VF   XXXXXXXXXXXXF++AL+NF GA K++KLKFAF++FDEDGNGVIT+QE                L +ILKANHMA +EAEV+RK DTIM+Q DKDGDG+I+FDEF +V KKFPNILFP+
Sbjct:  265 QVSFDEFYAMVTKGKQPPPGLGVVATSPEK------AGAAGPGGAATGAQAIQLRNQRKVALEEFARDNGIKPESVKKAYKRFQATDKDGSGQIDYSEFCEVLQVDPSPQCEKVFXXXXXXXXXXXXXXXFMIALSNFTGAEKEEKLKFAFLVFDEDGNGVITRQE----------------LIKILKANHMASSEAEVSRKADTIMSQGDKDGDGVISFDEFSVVSKKFPNILFPA 479          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64551.14045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FII4_ECTSI1.680e-10175.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD51_9PHAE1.490e-9273.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZJR9_9STRA4.370e-8760.89Putative calcineurin subunit B n=1 Tax=Tribonema m... [more]
A0A8J2S3Z5_9STRA2.990e-8265.40Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6S8C5R6_9STRA2.000e-8164.17Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S2SI02_9STRA2.130e-8169.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3M8S8_9STRA5.460e-8060.76Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2D4BEP0_PYTIN2.050e-7965.40Calcineurin subunit B, putative n=1 Tax=Pythium in... [more]
A0A6G0WVU7_9STRA3.460e-7959.83Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
G4Z244_PHYSP6.540e-7961.60Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64551contigH-elongata_contig64551:187..2850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.5
Seed ortholog evalue2.6e-81
Seed eggNOG ortholog2880.D7FII4
KEGG rclassRC00004,RC00037
KEGG koko:K02183,ko:K06268,ko:K08193,ko:K13510
KEGG TC2.A.1.14
KEGG ReactionR01318,R03437,R03438,R09036
KEGG Pathwayko00564,ko00565,ko01100,ko04010,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04310,ko04360,ko04370,ko04371,ko04380,ko04626,ko04650,ko04658,ko04659,ko04660,ko04662,ko04713,ko04720,ko04722,ko04724,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05014,ko05031,ko05034,ko05133,ko05152,ko05166,ko05167,ko05200,ko05214,ko05418,map00564,map00565,map01100,map04010,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04310,map04360,map04370,map04371,map04380,map04626,map04650,map04658,map04659,map04660,map04662,map04713,map04720,map04722,map04724,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05014,map05031,map05034,map05133,map05152,map05166,map05167,map05200,map05214,map05418
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759,KOG0034@2759
EC2.3.1.23,2.3.1.67
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko01009,ko02000,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons6
Model size723
Cds size696
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.6414747-UTR-H-elongata_contig64551:186..2131622931031.6414747-UTR-H-elongata_contig64551:186..213Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64551 187..213 +
1691679669.392769-UTR-H-elongata_contig64551:186..2131691679669.392769-UTR-H-elongata_contig64551:186..213Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64551 187..213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.6578197-CDS-H-elongata_contig64551:213..3661622931031.6578197-CDS-H-elongata_contig64551:213..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64551 214..366 +
1691679669.4182384-CDS-H-elongata_contig64551:213..3661691679669.4182384-CDS-H-elongata_contig64551:213..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64551 214..366 +
1622931031.6749094-CDS-H-elongata_contig64551:627..6991622931031.6749094-CDS-H-elongata_contig64551:627..699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64551 628..699 +
1691679669.4330158-CDS-H-elongata_contig64551:627..6991691679669.4330158-CDS-H-elongata_contig64551:627..699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64551 628..699 +
1622931031.6889908-CDS-H-elongata_contig64551:979..10391622931031.6889908-CDS-H-elongata_contig64551:979..1039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64551 980..1039 +
1691679669.4434345-CDS-H-elongata_contig64551:979..10391691679669.4434345-CDS-H-elongata_contig64551:979..1039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64551 980..1039 +
1622931031.7046866-CDS-H-elongata_contig64551:1262..14961622931031.7046866-CDS-H-elongata_contig64551:1262..1496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64551 1263..1496 +
1691679669.4535654-CDS-H-elongata_contig64551:1262..14961691679669.4535654-CDS-H-elongata_contig64551:1262..1496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64551 1263..1496 +
1622931031.7520068-CDS-H-elongata_contig64551:1936..20541622931031.7520068-CDS-H-elongata_contig64551:1936..2054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64551 1937..2054 +
1691679669.462837-CDS-H-elongata_contig64551:1936..20541691679669.462837-CDS-H-elongata_contig64551:1936..2054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64551 1937..2054 +
1622931031.7693572-CDS-H-elongata_contig64551:2791..28501622931031.7693572-CDS-H-elongata_contig64551:2791..2850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64551 2792..2850 +
1691679669.4714158-CDS-H-elongata_contig64551:2791..28501691679669.4714158-CDS-H-elongata_contig64551:2791..2850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64551 2792..2850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64551.14045.1prot_H-elongata_contig64551.14045.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64551 214..2850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64551.14045.1

>prot_H-elongata_contig64551.14045.1 ID=prot_H-elongata_contig64551.14045.1|Name=mRNA_H-elongata_contig64551.14045.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp
MATGGNLPPPGLGGTTTTTANTTGGGVVGIAVAATAPLGQNVVQQRNKKK
QALNEFSRDNNIKPESIKKAYKRFQATDNDSSGMIDYTEFCEIMQVDPSP
QCEGVFQLFDRDRSGQVDVREFLVALTNFAGASKDDKLKFAFMIFDEDGN
GVITKQEARNTPHPPTPIITLGCLTRILKANHMAQTEAEVARKTDTIMAQ
ADKDGDGIITFDEFVIVCKKFPNILFPSTGK*
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mRNA from alignment at H-elongata_contig64551:187..2850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64551.14045.1 ID=mRNA_H-elongata_contig64551.14045.1|Name=mRNA_H-elongata_contig64551.14045.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2664bp|location=Sequence derived from alignment at H-elongata_contig64551:187..2850+ (Himanthalia elongata Himel1 dioecious)
AAGGTAAGCTTCACAGAGTTTTACCAGATGGCTACCGGCGGAAACTTGCC TCCGCCCGGGCTTGGAGGGACTACTACTACTACTGCTAATACTACTGGGG GAGGCGTTGTGGGAATCGCGGTTGCCGCAACGGCACCACTAGGGCAAAAT GTTGTACAGCAGCGCAACAAGAAGAAGCAGGTCAGTCAGTCCATTTATTT TACGATTCGACACTAGGCATCCCATTTCATTACTTACTTTCTACATAGTG TAATACACTAACATTAGCACTAACATTCATCTTAGTATAGGACGTTGTTT GTGGTTGGACCGAGCTCGATTACCTATGATCCAGTGGACGCTTGCTCTGT GTATCCACCACCGTTCCACCACTAGTATAACACTAACGAGTACCGGTAGC TACCGACATCTCGTCGTATCGATCGATGTACAACGACCCAGGCATTAAAT GAATTTTCAAGGGACAATAACATCAAGCCTGAGAGCATCAAGAAAGCATA TAAACGGTTCCAGGTGATTTGAGGCTCCAGCAGACCATCCAAGAGATTAT TACTTTCAGTACTTTCACGAGGAGACCTGTATCATCCAGACGATACTCTT GGCGAGGGTGTGCCATCAAACAAGCCAAGCATTTGTCGCACTCTGGCATT CCAGGGATCTTGGTGTCTGACACGTAATCACGGGGGACTCCTCCCACTGA CAAATAATGAAGCAATGTTTGGAAATTATAGCCGATGTACAATACTGCGA TGAATGTTTCTTTTGCGACACTCCGCTGCTGCACTGTCCGCAGGCAACGG ATAATGACTCCTCGGGAATGATCGACTACACGGAGTTCTGCGAGATCATG CAGGTTGGCGTTTGTCGACCGAATAAGCGATCGCCTTGTTTGAAGAGGGT ATTTGTTTCGATTGATCGCTCAAAACACAAAATACTACAATAATATTAAT AGTCGCTCGCCGAAACTTTCAATGTATCCGATGTATCCTTATCGTCGTGC GAAAACCTCACCGCCCTATTCGTGTCAATAACTGTTCAATCGCCTGATAA CTAATTTTACGAACGGCCCTGTTCAGGTGGATCCTTCACCTCAGTGCGAG GGTGTGTTCCAGCTCTTTGATCGAGATCGCTCCGGGCAGGTCGACGTTCG AGAATTCTTGGTGGCCCTCACTAATTTTGCGGGTGCCAGTAAAGATGACA AGCTCAAGTTTGCCTTTATGATTTTCGACGAGGACGGCAACGGGGTCATC ACCAAGCAAGAGGCGAGAAATACCCCCCACCCCCCCACCCCAATTATTAC CCTAGGATGCGTTTTAAGCTCGTTGAGTTGGTAGCATTCGTTAATACATG GTCAACTTATGGAATGCCGCTCGTATTCGCCGAGGTATGATACAACGACA ACAACTTTGTTCCCTCTCGTCGAGTGTCCAACGTTGAAGGCGGTTTATTG AATCCTCGCTCCCTGGCAGGACCTCCGATGGCGGTAACATCTCACTCAAC TCCTTTATATGCTAGAAGCGTAATTAACGTCTACGAAAACAAAGACTGGA GCAAGTATTTTATCAGTAGCATGAGCAGTAGGATCGACGATGTCCTTCGT TGGCTCAAATCGCGCTTGCATCGCGACGACTCCAATAAGTCAAGAAATCA CCCGAACACCTGAGGCGGTAACTTCCACTATTATACTGCCGTACTAACGT CTCGCCCTGCTGCTTGTTCGTGCTGTTCATGTTTATGTTCGTCGGAGTAG CTTACCCGCATTTTGAAGGCCAATCATATGGCGCAGACGGAAGCAGAGGT GGCTCGAAAGACCGATACCATAATGGCGCAGGCGGACAAGGACGGCGATG GGATCATCACTTTCGACGGTACGTGGAAGGAGCTATCTAAAGTAAGGTAT AAATTAAAATACACCGAGAAACATTATGAATAGTATGTATTATGAATAAT ATCCAGTAGTATTTAAAGAACACCCATCGCACGTCACTATGACGAGCTCC GTACATCACCTACCTTCGGGCCCATTGAATAAAAATGATAGCACACTGAC AGGCGTTCCAAGCCGCACATCATCATGTTTTACGGGTGCCTCTCACAACA CGATTTATTATATAAATACAAATACTTGGTATATTTTAGCACGGACGATG GGTGATGCCTTGGCAGATGGGATGGGTGATGTATTTCGTTGAAGAGGTGT GGCACAATGACTGCCGCGCTGACGTTAAAGATGCGACAAAACACCACACA CCATACACAACGTGTGACGGCGATGACAACTTGCTGTTGTTATATAATAT TAATAGCTTCCGTTGGTAATGCGGCCGTTCGCTTCATCAGTACTGTTAAT CGCTATTTTACAGACGGTACTCTGATGATGGATGATCGTTCTCCCTTCTC CTCTAATCCAAATTTAATAATGGATATTGTACCGGTAGTATTCTGTATCC TATATAATAATGGATATTGTACCGGTAGATAGTTGGTCTCCCCTGGATTA CACCTCTCACAGTGCGAAAAAGGCGTTCATGTTTATTTTTTATAATAATG TATTATTTATTGCTTCGCCGTCTGTATTGCTTCGCCGACGTGCCACGCCT CGCAGAATTTGTAATCGTGTGCAAGAAGTTCCCGAACATCCTCTTCCCAT CCACCGGAAAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig64551:187..2850+

>mRNA_H-elongata_contig64551.14045.1 ID=mRNA_H-elongata_contig64551.14045.1|Name=mRNA_H-elongata_contig64551.14045.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at H-elongata_contig64551:187..2850+ (Himanthalia elongata Himel1 dioecious)
ATGGCTACCGGCGGAAACTTGCCTCCGCCCGGGCTTGGAGGGACTACTAC
TACTACTGCTAATACTACTGGGGGAGGCGTTGTGGGAATCGCGGTTGCCG
CAACGGCACCACTAGGGCAAAATGTTGTACAGCAGCGCAACAAGAAGAAG
CAGATGGCTACCGGCGGAAACTTGCCTCCGCCCGGGCTTGGAGGGACTAC
TACTACTACTGCTAATACTACTGGGGGAGGCGTTGTGGGAATCGCGGTTG
CCGCAACGGCACCACTAGGGCAAAATGTTGTACAGCAGCGCAACAAGAAG
AAGCAGGCATTAAATGAATTTTCAAGGGACAATAACATCAAGCCTGAGAG
CATCAAGAAAGCATATAAACGGTTCCAGGCATTAAATGAATTTTCAAGGG
ACAATAACATCAAGCCTGAGAGCATCAAGAAAGCATATAAACGGTTCCAG
GCAACGGATAATGACTCCTCGGGAATGATCGACTACACGGAGTTCTGCGA
GATCATGCAGGCAACGGATAATGACTCCTCGGGAATGATCGACTACACGG
AGTTCTGCGAGATCATGCAGGTGGATCCTTCACCTCAGTGCGAGGGTGTG
TTCCAGCTCTTTGATCGAGATCGCTCCGGGCAGGTCGACGTTCGAGAATT
CTTGGTGGCCCTCACTAATTTTGCGGGTGCCAGTAAAGATGACAAGCTCA
AGTTTGCCTTTATGATTTTCGACGAGGACGGCAACGGGGTCATCACCAAG
CAAGAGGCGAGAAATACCCCCCACCCCCCCACCCCAATTATTACCCTAGG
ATGCGTGGATCCTTCACCTCAGTGCGAGGGTGTGTTCCAGCTCTTTGATC
GAGATCGCTCCGGGCAGGTCGACGTTCGAGAATTCTTGGTGGCCCTCACT
AATTTTGCGGGTGCCAGTAAAGATGACAAGCTCAAGTTTGCCTTTATGAT
TTTCGACGAGGACGGCAACGGGGTCATCACCAAGCAAGAGGCGAGAAATA
CCCCCCACCCCCCCACCCCAATTATTACCCTAGGATGCCTTACCCGCATT
TTGAAGGCCAATCATATGGCGCAGACGGAAGCAGAGGTGGCTCGAAAGAC
CGATACCATAATGGCGCAGGCGGACAAGGACGGCGATGGGATCATCACTT
TCGACGCTTACCCGCATTTTGAAGGCCAATCATATGGCGCAGACGGAAGC
AGAGGTGGCTCGAAAGACCGATACCATAATGGCGCAGGCGGACAAGGACG
GCGATGGGATCATCACTTTCGACGAATTTGTAATCGTGTGCAAGAAGTTC
CCGAACATCCTCTTCCCATCCACCGGAAAATAGAATTTGTAATCGTGTGC
AAGAAGTTCCCGAACATCCTCTTCCCATCCACCGGAAAATAG
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