mRNA_H-elongata_contig6429.14017.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6429.14017.1
Unique NamemRNA_H-elongata_contig6429.14017.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 8.520e-39
Identity = 71/163 (43.56%), Postives = 102/163 (62.58%), Query Frame = 1 
Query:    1 DKNGMIVKTKARLVAHGFM*REGMDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 489
            +K G + K KA LVA GF     +DFF + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++++P G+   S  IV+ E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+++V++VDD+ VAG++ +  EL   LN
Sbjct:   12 NKEGKVDKFKALLVARGFSQIPNVDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDEDCEELLASLN 173
[Close]
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.030e-35
Identity = 73/163 (44.79%), Postives = 100/163 (61.35%), Query Frame = 1 
Query:    1 DKNGMIVKTKARLVAHGFM*REGMDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 489
            +K G I   KARLVA GF     +D+F + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++KLP G    S  I + E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  EL   LN
Sbjct:  593 NKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLN 754
[Close]
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.100e-35
Identity = 73/163 (44.79%), Postives = 100/163 (61.35%), Query Frame = 1 
Query:    1 DKNGMIVKTKARLVAHGFM*REGMDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 489
            +K G I   KARLVA GF     +D+F + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++KLP G    S  I + E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  EL   LN
Sbjct:  793 NKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLN 954
[Close]
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.190e-35
Identity = 73/163 (44.79%), Postives = 100/163 (61.35%), Query Frame = 1 
Query:    1 DKNGMIVKTKARLVAHGFM*REGMDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 489
            +K G I   KARLVA GF     +D+F + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++KLP G    S  I + E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  EL   LN
Sbjct: 1172 NKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLN 1333
[Close]
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.200e-35
Identity = 73/163 (44.79%), Postives = 100/163 (61.35%), Query Frame = 1 
Query:    1 DKNGMIVKTKARLVAHGFM*REGMDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 489
            +K G I   KARLVA GF     +D+F + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++KLP G    S  I + E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  EL   LN
Sbjct: 1192 NKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLN 1353
[Close]
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.210e-35
Identity = 73/163 (44.79%), Postives = 100/163 (61.35%), Query Frame = 1 
Query:    1 DKNGMIVKTKARLVAHGFM*REGMDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 489
            +K G I   KARLVA GF     +D+F + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++KLP G    S  I + E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  EL   LN
Sbjct: 1335 NKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLN 1496
[Close]
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 7.630e-35
Identity = 73/163 (44.79%), Postives = 102/163 (62.58%), Query Frame = 1 
Query:    1 DKNGMIVKTKARLVAHGFM*REGMDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 489
            +K G I K KAR+VA GF     +D+F++ +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V+ +LP G    S  IV+ E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  EL   LN
Sbjct:  902 NKEGKIDKFKARVVARGFSQLPNVDYFRSSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLN 1063
[Close]
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5KU29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU29_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.290e-34
Identity = 70/163 (42.94%), Postives = 99/163 (60.74%), Query Frame = 1 
Query:    1 DKNGMIVKTKARLVAHGFM*REGMDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 489
            +K G I K KARLVA GF     +D+F + +P  ++AS+ ++LAV NE    +NH D  QA   A+LD  V+++LP G    S  +V+ E+A+YG +QSG  W      T V  +G EQCK DPC+FRK +D  VV     +VDD+ VAG++++  EL   LN
Sbjct:  174 NKEGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMKDDVVVXXXXXYVDDILVAGSDDDCKELLDSLN 335
[Close]
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.520e-34
Identity = 70/154 (45.45%), Postives = 96/154 (62.34%), Query Frame = 1 
Query:   10 GMIVKTKARLVAHGFM*REGMDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSE 471
            G I K KARLVA GF     +D+F + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++KLP G    S  I + E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  E
Sbjct:   96 GKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEE 248
[Close]
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.720e-34
Identity = 71/158 (44.94%), Postives = 98/158 (62.03%), Query Frame = 1 
Query:    1 DKNGMIVKTKARLVAHGFM*REGMDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSEL 474
            +K G I   KARLVA GF     +D+F + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++KLP G    S  I + E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  EL
Sbjct:  347 NKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEEL 503
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIS9_9PHAE8.520e-3943.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTV6_9PHAE4.030e-3544.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE4.100e-3544.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE4.190e-3544.79Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE4.200e-3544.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE4.210e-3544.79Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JQW4_9PHAE7.630e-3544.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KU29_9PHAE1.290e-3442.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFN5_9PHAE1.520e-3445.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC10_9PHAE1.720e-3444.94Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6429contigH-elongata_contig6429:9714..10205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score86.7
Seed ortholog evalue9.7e-15
Seed eggNOG ortholog946362.XP_004997371.1
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,COG2801@1,KOG0017@2759
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size492
Cds size423
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.774039-UTR-H-elongata_contig6429:9713..97821622931028.774039-UTR-H-elongata_contig6429:9713..9782Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6429 9714..9782 +
1691679668.2272134-UTR-H-elongata_contig6429:9713..97821691679668.2272134-UTR-H-elongata_contig6429:9713..9782Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6429 9714..9782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.788185-CDS-H-elongata_contig6429:9782..102051622931028.788185-CDS-H-elongata_contig6429:9782..10205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6429 9783..10205 +
1691679668.2398593-CDS-H-elongata_contig6429:9782..102051691679668.2398593-CDS-H-elongata_contig6429:9782..10205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6429 9783..10205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6429.14017.1prot_H-elongata_contig6429.14017.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6429 9783..10205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6429.14017.1

>prot_H-elongata_contig6429.14017.1 ID=prot_H-elongata_contig6429.14017.1|Name=mRNA_H-elongata_contig6429.14017.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYM
KLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTD
PCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLND
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mRNA from alignment at H-elongata_contig6429:9714..10205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6429.14017.1 ID=mRNA_H-elongata_contig6429.14017.1|Name=mRNA_H-elongata_contig6429.14017.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=492bp|location=Sequence derived from alignment at H-elongata_contig6429:9714..10205+ (Himanthalia elongata Himel1 dioecious)
GACAAGAATGGAATGATCGTAAAGACGAAGGCTCGACTAGTGGCACACGG
ATTCATGTAGAGAGAGGGCATGGATTTCTTCCAGACTGTTGCTCCCACAT
CTGCCGCGGCATCGGTAAATATTGTTCTTGCTGTTACAAACGAGCTAGGT
TATCCGGTAAACCATCTTGACACCGCGCAAGCCGTCATGCAAGCTGAGCT
GGACTGCACGGTTTATATGAAGCTTCCTGGTGGTTTTAGTAGTTTGTCTG
GTAATATCGTCCGACTTGAGAAGGCTCTCTATGGCCGTAGACAAAGCGGC
CTGCTTTGGAACAGTTTGTTGGTCAAAACGTTTGTGATGAGGCATGGCAT
GGAACAGTGCAAGACCGACCCGTGTATGTTCCGTAAGTTTCGGGATGGCA
AGGTAGTCTTGATTCTGGTCGTTCATGTAGACGACATGACGGTAGCTGGT
ACAGAGAATGAGGTGAGCGAGCTGCATCCGGTGCTCAACGAT
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Coding sequence (CDS) from alignment at H-elongata_contig6429:9714..10205+

>mRNA_H-elongata_contig6429.14017.1 ID=mRNA_H-elongata_contig6429.14017.1|Name=mRNA_H-elongata_contig6429.14017.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig6429:9714..10205+ (Himanthalia elongata Himel1 dioecious)
ATGGATTTCTTCCAGACTGTTGCTCCCACATCTGCCGCGGCATCGGTAAA
TATTGTTCTTGCTGTTACAAACGAGCTAGGTTATCCGGTAAACCATCTTG
ACACCGCGCAAGCCGTCATGCAAGCTGAGCTGGACTGCACGGTTTATATG
AAGCTTCCTGGTGGTTTTAGTAGTTTGTCTGGTAATATCGTCCGACTTGA
GAAGGCTCTCTATGGCCGTAGACAAAGCGGCCTGCTTTGGAACAGTTTGT
TGGTCAAAACGTTTGTGATGAGGCATGGCATGGAACAGTGCAAGACCGAC
CCGTGTATGTTCCGTAAGTTTCGGGATGGCAAGGTAGTCTTGATTCTGGT
CGTTCATGTAGACGACATGACGGTAGCTGGTACAGAGAATGAGGTGAGCG
AGCTGCATCCGGTGCTCAACGATATGGATTTCTTCCAGACTGTTGCTCCC
ACATCTGCCGCGGCATCGGTAAATATTGTTCTTGCTGTTACAAACGAGCT
AGGTTATCCGGTAAACCATCTTGACACCGCGCAAGCCGTCATGCAAGCTG
AGCTGGACTGCACGGTTTATATGAAGCTTCCTGGTGGTTTTAGTAGTTTG
TCTGGTAATATCGTCCGACTTGAGAAGGCTCTCTATGGCCGTAGACAAAG
CGGCCTGCTTTGGAACAGTTTGTTGGTCAAAACGTTTGTGATGAGGCATG
GCATGGAACAGTGCAAGACCGACCCGTGTATGTTCCGTAAGTTTCGGGAT
GGCAAGGTAGTCTTGATTCTGGTCGTTCATGTAGACGACATGACGGTAGC
TGGTACAGAGAATGAGGTGAGCGAGCTGCATCCGGTGCTCAACGAT
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