mRNA_H-elongata_contig64288.14016.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64288.14016.1
Unique NamemRNA_H-elongata_contig64288.14016.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64288.14016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64288contigH-elongata_contig64288:2343..2717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.7017095-CDS-H-elongata_contig64288:2342..26961622931028.7017095-CDS-H-elongata_contig64288:2342..2696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64288 2343..2696 -
1691679668.205099-CDS-H-elongata_contig64288:2342..26961691679668.205099-CDS-H-elongata_contig64288:2342..2696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64288 2343..2696 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.7226012-UTR-H-elongata_contig64288:2696..27171622931028.7226012-UTR-H-elongata_contig64288:2696..2717Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64288 2697..2717 -
1691679668.2165604-UTR-H-elongata_contig64288:2696..27171691679668.2165604-UTR-H-elongata_contig64288:2696..2717Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64288 2697..2717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64288.14016.1prot_H-elongata_contig64288.14016.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64288 2343..2696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64288.14016.1

>prot_H-elongata_contig64288.14016.1 ID=prot_H-elongata_contig64288.14016.1|Name=mRNA_H-elongata_contig64288.14016.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MSPGQDPDVFLYELNTRRECLNACDPPEGPKDHQVEDIIIQALPPEYERI
RISHLEKPDLGIADIRRMMSVIYAANLARSGSTTGIAGRGATMPATEDKR
GDIICHYCERAGHFKNTC
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mRNA from alignment at H-elongata_contig64288:2343..2717-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64288.14016.1 ID=mRNA_H-elongata_contig64288.14016.1|Name=mRNA_H-elongata_contig64288.14016.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig64288:2343..2717- (Himanthalia elongata Himel1 dioecious)
GCCAAAATAAACTCCGCACAAATGAGTCCTGGCCAAGACCCTGACGTGTT
CTTGTATGAGCTCAATACTCGCCGCGAATGCCTCAACGCGTGCGATCCTC
CAGAGGGACCGAAGGATCACCAGGTCGAGGATATCATTATTCAAGCTCTT
CCACCGGAGTACGAGCGCATTCGAATATCCCACCTCGAGAAGCCCGACCT
CGGGATCGCCGACATTCGCCGCATGATGTCAGTTATCTATGCGGCCAACC
TTGCCCGTTCGGGCTCGACGACGGGAATTGCGGGGCGCGGGGCTACTATG
CCCGCGACAGAAGACAAACGCGGTGACATCATTTGCCACTACTGCGAACG
CGCGGGCCATTTCAAGAACACGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig64288:2343..2717-

>mRNA_H-elongata_contig64288.14016.1 ID=mRNA_H-elongata_contig64288.14016.1|Name=mRNA_H-elongata_contig64288.14016.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig64288:2343..2717- (Himanthalia elongata Himel1 dioecious)
ATGAGTCCTGGCCAAGACCCTGACGTGTTCTTGTATGAGCTCAATACTCG
CCGCGAATGCCTCAACGCGTGCGATCCTCCAGAGGGACCGAAGGATCACC
AGGTCGAGGATATCATTATTCAAGCTCTTCCACCGGAGTACGAGCGCATT
CGAATATCCCACCTCGAGAAGCCCGACCTCGGGATCGCCGACATTCGCCG
CATGATGTCAGTTATCTATGCGGCCAACCTTGCCCGTTCGGGCTCGACGA
CGGGAATTGCGGGGCGCGGGGCTACTATGCCCGCGACAGAAGACAAACGC
GGTGACATCATTTGCCACTACTGCGAACGCGCGGGCCATTTCAAGAACAC
GTGCATGAGTCCTGGCCAAGACCCTGACGTGTTCTTGTATGAGCTCAATA
CTCGCCGCGAATGCCTCAACGCGTGCGATCCTCCAGAGGGACCGAAGGAT
CACCAGGTCGAGGATATCATTATTCAAGCTCTTCCACCGGAGTACGAGCG
CATTCGAATATCCCACCTCGAGAAGCCCGACCTCGGGATCGCCGACATTC
GCCGCATGATGTCAGTTATCTATGCGGCCAACCTTGCCCGTTCGGGCTCG
ACGACGGGAATTGCGGGGCGCGGGGCTACTATGCCCGCGACAGAAGACAA
ACGCGGTGACATCATTTGCCACTACTGCGAACGCGCGGGCCATTTCAAGA
ACACGTGC
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