mRNA_H-elongata_contig63713.13944.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63713.13944.1
Unique NamemRNA_H-elongata_contig63713.13944.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig63713.13944.1 vs. uniprot
Match: D8LIR1_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR1_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 1.130e-46
Identity = 77/98 (78.57%), Postives = 90/98 (91.84%), Query Frame = 1
Query:    1 SRFQLTIRFGLPDTSTRREVFGVYAKQLMQGELETLASISGGMSCRDIKETCQHAERRWASKVVRGQETAEVPSLHEYVACLDRRSQEGAWSSRPAQA 294
            SRFQL+I+FGLPD +TRREVFG+YAKQL Q EL+TLA+I+ GMS RD+KETCQHAERRWASK+VRGQET+E+PSL EYV C+DRRS+EGAW SRPAQA
Sbjct:  287 SRFQLSIQFGLPDATTRREVFGLYAKQLSQHELQTLATITAGMSGRDMKETCQHAERRWASKLVRGQETSELPSLKEYVDCVDRRSREGAWQSRPAQA 384          
BLAST of mRNA_H-elongata_contig63713.13944.1 vs. uniprot
Match: A0A0W8AYC1_PHYNI (Diatom spindle kinesin-1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8AYC1_PHYNI)

HSP 1 Score: 103 bits (256), Expect = 1.590e-23
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 SRFQLTIRFGLPDTSTRREVFGVYAKQLMQGELETLASISGGMSCRDIKETCQHAERRWASKVVRGQETAEVPSLHEYVACL 246
            SRF L+IR+ LPD  TRR VFG YAKQL + EL  LA++S  +SCRDIKE C++AER+WASKV++ +ET E+P+L  Y+  +
Sbjct: 1160 SRFDLSIRYNLPDEKTRRAVFGRYAKQLSEEELSQLAAVSSQLSCRDIKEICEYAERKWASKVLKKEETTELPTLQTYMEAV 1241          
BLAST of mRNA_H-elongata_contig63713.13944.1 vs. uniprot
Match: A0A329T291_9STRA (AAA domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A329T291_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.950e-23
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 SRFQLTIRFGLPDTSTRREVFGVYAKQLMQGELETLASISGGMSCRDIKETCQHAERRWASKVVRGQETAEVPSLHEYVACL 246
            SRF L+IR+ LPD +TRR VFG YAKQL   EL  LA++S  +SCRDIKE C++AER+WASKV++ +ET E+P+L  Y+  +
Sbjct:  486 SRFDLSIRYNLPDETTRRAVFGRYAKQLSDEELSQLAAVSSQLSCRDIKEICEYAERKWASKVLKKEETTELPTLRTYMEAV 567          
BLAST of mRNA_H-elongata_contig63713.13944.1 vs. uniprot
Match: W2GL19_PHYPR (AAA domain-containing protein n=24 Tax=Phytophthora parasitica TaxID=4792 RepID=W2GL19_PHYPR)

HSP 1 Score: 102 bits (253), Expect = 3.640e-23
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 SRFQLTIRFGLPDTSTRREVFGVYAKQLMQGELETLASISGGMSCRDIKETCQHAERRWASKVVRGQETAEVPSLHEYVACL 246
            SRF L+IR+ LPD  TRR VFG YA+QL + EL  LA++S  +SCRDIKE C++AER+WASKV++ +ET E+P+L  Y+  +
Sbjct:  485 SRFDLSIRYNLPDEKTRRAVFGRYARQLSEEELSQLAAVSSQLSCRDIKEICEYAERKWASKVLKKEETTELPTLQTYMEAV 566          
BLAST of mRNA_H-elongata_contig63713.13944.1 vs. uniprot
Match: K3WQ91_GLOUD (AAA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ91_GLOUD)

HSP 1 Score: 101 bits (252), Expect = 5.150e-23
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 SRFQLTIRFGLPDTSTRREVFGVYAKQLMQGELETLASISGGMSCRDIKETCQHAERRWASKVVRGQETAEVPSLHEYV 237
            SRF L IR+ LPD +TR+ VFG YAKQL   +L  LA IS G+SCRDIKE C++AER+WASKV++ +ET EVP+L  Y+
Sbjct:  514 SRFDLCIRYDLPDEATRQAVFGRYAKQLSSEDLHQLALISSGLSCRDIKEICEYAERKWASKVLKKEETEEVPTLQAYM 592          
BLAST of mRNA_H-elongata_contig63713.13944.1 vs. uniprot
Match: A0A0N7L5Q2_PLAHL (Aaa-type atpase family protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5Q2_PLAHL)

HSP 1 Score: 101 bits (251), Expect = 5.730e-23
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    1 SRFQLTIRFGLPDTSTRREVFGVYAKQLMQGELETLASISGGMSCRDIKETCQHAERRWASKVVRGQETAEVPSLHEYVACL 246
            SRF L+IR+ LPD  TRR VFG YAKQL   EL+ +A++S  +SCRDIKE C++AER+WASKV+R  ET+EVP    Y+  +
Sbjct:  411 SRFDLSIRYDLPDKKTRRAVFGRYAKQLSDEELQHMAAVSSHLSCRDIKEICEYAERKWASKVLRKTETSEVPDTQAYLEAI 492          
BLAST of mRNA_H-elongata_contig63713.13944.1 vs. uniprot
Match: G4YPN9_PHYSP (AAA domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=G4YPN9_PHYSP)

HSP 1 Score: 100 bits (249), Expect = 1.270e-22
Identity = 51/97 (52.58%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 SRFQLTIRFGLPDTSTRREVFGVYAKQLMQGELETLASISGGMSCRDIKETCQHAERRWASKVVRGQETAEVPSLHEYVACLDRRSQEGAWSSRPAQ 291
            SRF L+IR+ LPD  TRR VF  YAKQL   EL  LA+IS  +SCRDIKE C++AER+WASKV++ +ET E+P+L  Y+  +  ++  G  SS  +Q
Sbjct:  482 SRFDLSIRYNLPDEKTRRAVFARYAKQLSDDELGQLATISPQLSCRDIKEICEYAERKWASKVLKKEETTELPTLKTYMEAV--KTHMGGLSSHDSQ 576          
BLAST of mRNA_H-elongata_contig63713.13944.1 vs. uniprot
Match: A0A5D6Y554_9STRA (Kinesin motor domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y554_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.910e-22
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    1 SRFQLTIRFGLPDTSTRREVFGVYAKQLMQGELETLASISGGMSCRDIKETCQHAERRWASKVVRGQETAEVPSLHEYV 237
            SRF L IR+ LPD +TR+ VFG YAKQL   EL  LA +S G+SCRDIKE C++AER+WASKV++ +ET  +P+L  Y+
Sbjct: 1060 SRFDLCIRYDLPDEATRKAVFGRYAKQLSSDELAQLAVVSAGLSCRDIKEICEYAERKWASKVLKKEETGALPTLRSYM 1138          
BLAST of mRNA_H-elongata_contig63713.13944.1 vs. uniprot
Match: A0A6A4DVH9_9STRA (Diatom spindle kinesin-1 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DVH9_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.610e-22
Identity = 49/97 (50.52%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 SRFQLTIRFGLPDTSTRREVFGVYAKQLMQGELETLASISGGMSCRDIKETCQHAERRWASKVVRGQETAEVPSLHEYVACLDRRSQEGAWSSRPAQ 291
            SRF L+IR+ LPD  TRR VF  YAKQL   +L  LA++S  +SCRDIKE C++AER+WASKV++ +ET E+P+L  Y+  +  ++  G  SS  +Q
Sbjct: 1070 SRFDLSIRYNLPDEKTRRAVFARYAKQLSDDDLSQLAAVSPQLSCRDIKEICEYAERKWASKVLKKEETTELPTLKTYMEAV--KAHMGGLSSHDSQ 1164          
BLAST of mRNA_H-elongata_contig63713.13944.1 vs. uniprot
Match: A0A225X213_9STRA (ATPase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X213_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 6.120e-22
Identity = 50/97 (51.55%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    1 SRFQLTIRFGLPDTSTRREVFGVYAKQLMQGELETLASISGGMSCRDIKETCQHAERRWASKVVRGQETAEVPSLHEYVACLDRRSQEGAWSSRPAQ 291
            SRF L+IR+ LPD +TRR VF  YAKQL   EL  LA++S  +SCRDIKE C++AER+WASKV++ +ET E+P+L  Y+  +  ++  G  SS  +Q
Sbjct:  485 SRFDLSIRYNLPDENTRRAVFARYAKQLSDEELLQLAAVSPQLSCRDIKEICEYAERKWASKVLKKEETTELPTLQTYMDAV--KTHIGGVSSHGSQ 579          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63713.13944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIR1_ECTSI1.130e-4678.57AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0W8AYC1_PHYNI1.590e-2357.32Diatom spindle kinesin-1 n=1 Tax=Phytophthora nico... [more]
A0A329T291_9STRA1.950e-2357.32AAA domain-containing protein n=4 Tax=Phytophthora... [more]
W2GL19_PHYPR3.640e-2356.10AAA domain-containing protein n=24 Tax=Phytophthor... [more]
K3WQ91_GLOUD5.150e-2360.76AAA domain-containing protein n=1 Tax=Globisporang... [more]
A0A0N7L5Q2_PLAHL5.730e-2357.32Aaa-type atpase family protein n=1 Tax=Plasmopara ... [more]
G4YPN9_PHYSP1.270e-2252.58AAA domain-containing protein n=9 Tax=Phytophthora... [more]
A0A5D6Y554_9STRA1.910e-2258.23Kinesin motor domain-containing protein n=1 Tax=Py... [more]
A0A6A4DVH9_9STRA2.610e-2250.52Diatom spindle kinesin-1 n=1 Tax=Phytophthora frag... [more]
A0A225X213_9STRA6.120e-2251.55ATPase n=1 Tax=Phytophthora megakarya TaxID=4795 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63713contigH-elongata_contig63713:168..1074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue4.4e-38
Seed eggNOG ortholog2880.D8LIR1
EggNOG free text desc.ATP binding
EggNOG OGsCOG0464@1,KOG0730@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931020.4293313-CDS-H-elongata_contig63713:167..3141622931020.4293313-CDS-H-elongata_contig63713:167..314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63713 168..314 +
1691679665.1757212-CDS-H-elongata_contig63713:167..3141691679665.1757212-CDS-H-elongata_contig63713:167..314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63713 168..314 +
1622931020.4428513-CDS-H-elongata_contig63713:924..10741622931020.4428513-CDS-H-elongata_contig63713:924..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63713 925..1074 +
1691679665.186234-CDS-H-elongata_contig63713:924..10741691679665.186234-CDS-H-elongata_contig63713:924..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63713 925..1074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63713.13944.1prot_H-elongata_contig63713.13944.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63713 168..1074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63713.13944.1

>prot_H-elongata_contig63713.13944.1 ID=prot_H-elongata_contig63713.13944.1|Name=mRNA_H-elongata_contig63713.13944.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
SRFQLTIRFGLPDTSTRREVFGVYAKQLMQGELETLASISGGMSCRDIKE
TCQHAERRWASKVVRGQETAEVPSLHEYVACLDRRSQEGAWSSRPAQA*
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mRNA from alignment at H-elongata_contig63713:168..1074+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63713.13944.1 ID=mRNA_H-elongata_contig63713.13944.1|Name=mRNA_H-elongata_contig63713.13944.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=907bp|location=Sequence derived from alignment at H-elongata_contig63713:168..1074+ (Himanthalia elongata Himel1 dioecious)
AGCCGTTTCCAGCTCACGATTCGATTCGGCCTCCCGGACACCAGCACTCG CCGAGAGGTGTTCGGTGTGTACGCGAAGCAGCTGATGCAAGGGGAGCTCG AGACCCTCGCGTCTATTTCCGGAGGCATGTCTTGTCGGGACATCAAGGTA TGAAATGGGAAGGGAGGGTGGATGGATTGGTGGATGAGTGAATAGGGCCG GGAGAGGCGCGGGAAACACCGAGCAACGCGAAGCTGATTTAAAATGGAAT ATGGAATGGGATGATAATCGGATAAAACTGGTGCGAGAGAGCGACCTGCA CACACATGCCGGTATCGCATTTAAAAACACAACAATGGAGCAAATTTTGA GAGATGGTATAAAACTCCCCGTTTTTTAGTGCATATAGTTTGTTTTGATG GTTTGGAGCAGAAGCTCTGTCGCCTGTCTACGTGATGTATCTGCATTGAC GTGGGTTGATTGCGGTGGAAGTATCGACGGCAGTCTGGGCATGCGCGGAG TGTTCCGCCACTGATGTTTTCTGTGCTATATATATACTATATATATATAC TATACTAAATATATATTTCGCTTCGTACGATGTACCGTTTTTGATTATTG TGAAAATTGCGATAGACATCTCATATTTTTTGTTTTGAAATTATCCTACC CTGGTATCGTTTTTCCTACACGCCTACGATAGCTCTATGATAGCTCTCCT TGTTACTGACCGATGCATGTTGTTTTTGTTTTGTTTATTTATATTTAAAT TGTACAGGAAACCTGCCAGCACGCCGAAAGACGGTGGGCGTCTAAGGTCG TTCGCGGCCAGGAGACCGCCGAGGTCCCCAGCCTCCACGAGTACGTGGCC TGTCTCGACAGGCGCAGCCAGGAGGGGGCGTGGTCGTCCCGCCCAGCCCA GGCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig63713:168..1074+

>mRNA_H-elongata_contig63713.13944.1 ID=mRNA_H-elongata_contig63713.13944.1|Name=mRNA_H-elongata_contig63713.13944.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig63713:168..1074+ (Himanthalia elongata Himel1 dioecious)
AGCCGTTTCCAGCTCACGATTCGATTCGGCCTCCCGGACACCAGCACTCG
CCGAGAGGTGTTCGGTGTGTACGCGAAGCAGCTGATGCAAGGGGAGCTCG
AGACCCTCGCGTCTATTTCCGGAGGCATGTCTTGTCGGGACATCAAGAGC
CGTTTCCAGCTCACGATTCGATTCGGCCTCCCGGACACCAGCACTCGCCG
AGAGGTGTTCGGTGTGTACGCGAAGCAGCTGATGCAAGGGGAGCTCGAGA
CCCTCGCGTCTATTTCCGGAGGCATGTCTTGTCGGGACATCAAGGAAACC
TGCCAGCACGCCGAAAGACGGTGGGCGTCTAAGGTCGTTCGCGGCCAGGA
GACCGCCGAGGTCCCCAGCCTCCACGAGTACGTGGCCTGTCTCGACAGGC
GCAGCCAGGAGGGGGCGTGGTCGTCCCGCCCAGCCCAGGCCTGAGAAACC
TGCCAGCACGCCGAAAGACGGTGGGCGTCTAAGGTCGTTCGCGGCCAGGA
GACCGCCGAGGTCCCCAGCCTCCACGAGTACGTGGCCTGTCTCGACAGGC
GCAGCCAGGAGGGGGCGTGGTCGTCCCGCCCAGCCCAGGCCTGA
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