mRNA_H-elongata_contig63361.13915.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63361.13915.1
Unique NamemRNA_H-elongata_contig63361.13915.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63361.13915.1 vs. uniprot
Match: A0A6H5LA95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA95_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.300e-20
Identity = 66/119 (55.46%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:  331 AECPTDKCRDPITLDDLGSWTWDFHASEAATPPVSCGGTAAPKNGGD---MTKRSGXXXXXXXXSKGRSRPGKGKGGFRAGGADGGTISCSGGGGSSPVVTYNVESLVFYLLESGDFQV 678
            AE P D CRDPITLDDLGSWTWDF ASEAATPPVSCG T + K+GG      KR G    XXXX                               SS VVTYNVESLV YLLESGDFQV
Sbjct:  184 AERPPDVCRDPITLDDLGSWTWDFRASEAATPPVSCGATKSTKHGGGGGWKGKRFGVGGKXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXSSAVVTYNVESLVLYLLESGDFQV 296
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BLAST of mRNA_H-elongata_contig63361.13915.1 vs. uniprot
Match: D7FNR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR0_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 7.970e-19
Identity = 91/235 (38.72%), Postives = 98/235 (41.70%), Query Frame = 1 
Query:    1 MLRKGWVTREEYGQLLMGDRWE-------EEGERARLVFCRNYLTSLKKPTRPPSNVSVSREKTRQIVLYARGRGGAGGGDAVARGEQGACSRVNYSKTVGAAHASKTASTPEKKKKAECPTDKCRDPITLDDLGSWTWDFHASEAATPPVSCGGTAAPKNGGD---MTKRSGXXXXXXXXSKGRSRPGKGKGGFRAGGADGGTISCSGGGGSSPVVTYNVESLVFYLLESGDFQ 675
            ML +GWVTREEY QLL GDR         EE         RN +   +K  R      V R + R+                                                   AE P D CRDPITLDDLGSWTWDF ASEAATPPVSCG T + K+GG      KR G   XXXXX                               SS VVTYNVESLV YLLESGDFQ
Sbjct:    1 MLERGWVTREEYQQLLHGDRLYSLHESEMEEXXXXXXXXLRNKIGLRRKLWRQTQIGVVRRARARKKAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERPPDVCRDPITLDDLGSWTWDFRASEAATPPVSCGATKSTKHGGGGGWKGKRFGVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---SSAVVTYNVESLVLYLLESGDFQ 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63361.13915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LA95_9PHAE5.300e-2055.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNR0_ECTSI7.970e-1938.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63361contigH-elongata_contig63361:120..2246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue1.4e-18
Seed eggNOG ortholog2880.D7FNR0
EggNOG OGs293KV@1,2RAHN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_004580.1
Exons3
Model size699
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63361.13915.1prot_H-elongata_contig63361.13915.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63361 120..2246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931017.4478183-CDS-H-elongata_contig63361:119..5541622931017.4478183-CDS-H-elongata_contig63361:119..554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63361 120..554 -
1691679663.8621984-CDS-H-elongata_contig63361:119..5541691679663.8621984-CDS-H-elongata_contig63361:119..554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63361 120..554 -
1622931017.4678645-CDS-H-elongata_contig63361:935..10811622931017.4678645-CDS-H-elongata_contig63361:935..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63361 936..1081 -
1691679663.8840585-CDS-H-elongata_contig63361:935..10811691679663.8840585-CDS-H-elongata_contig63361:935..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63361 936..1081 -
1622931017.4853666-CDS-H-elongata_contig63361:2128..22461622931017.4853666-CDS-H-elongata_contig63361:2128..2246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63361 2129..2246 -
1691679663.9001317-CDS-H-elongata_contig63361:2128..22461691679663.9001317-CDS-H-elongata_contig63361:2128..2246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63361 2129..2246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63361.13915.1

>prot_H-elongata_contig63361.13915.1 ID=prot_H-elongata_contig63361.13915.1|Name=mRNA_H-elongata_contig63361.13915.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=233bp
MLRKGWVTREEYGQLLMGDRWEEEGERARLVFCRNYLTSLKKPTRPPSNV
SVSREKTRQIVLYARGRGGAGGGDAVARGEQGACSRVNYSKTVGAAHASK
TASTPEKKKKAECPTDKCRDPITLDDLGSWTWDFHASEAATPPVSCGGTA
APKNGGDMTKRSGGGRAGRTGSKGRSRPGKGKGGFRAGGADGGTISCSGG
GGSSPVVTYNVESLVFYLLESGDFQVMDVFWF*
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mRNA from alignment at H-elongata_contig63361:120..2246-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63361.13915.1 ID=mRNA_H-elongata_contig63361.13915.1|Name=mRNA_H-elongata_contig63361.13915.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2127bp|location=Sequence derived from alignment at H-elongata_contig63361:120..2246- (Himanthalia elongata Himel1 dioecious)
ATGCTGCGGAAGGGCTGGGTCACAAGGGAAGAGTACGGGCAGCTTCTGAT
GGGGGATAGGTGGGAGGAAGAGGGCGAGAGAGCGAGATTAGTTTTTTGTA
GGAACTATTTGACAAGTTGTTGATTTTGTTGGGGGTGTCGTGTGAATGTC
TCACGCTTTCAATCTCGGGAGGCATACTGGTTGATTGTGGTCGATTATTA
TTATTATTATTGTTTTATTTTATTTTTTCTCCCTTCTTTCCTTTAGTTTA
TAATTTAAAAATCGTTTTCTAATTTACAGCTCACGACCATCTAGGATTTG
GTTTGGCGTCCTCATATATAGAACGACTTAGAGTGCGCTAATAAGTGTAG
ATGTTTCGATATGCACATTAATAATATATAATCAGTTCTACGTTAGAAAT
ACGCTTCTAGAAAGGAATTTTCTCATATAGATAAAGTCCGAAGTTAATCG
AGATATATGTACAATGCAACCATGTGCTTTACTGATCTATTTACTTAAGT
GTTACGATTTTGTGCTCAAAGGTAGTAATGTACACATTCAAACCTGACGA
TAGTTGGTCCCCTGGATTGCACCTCTCATGGCGCTAAGAATGTGTGGATG
TTCGCAACGTTGGGATGAGTTCAAGGTTTAAAAATAAAAATGTACTGGTA
GTGAATGTCGTGTCATGTTGCACCATGGTTGATACCCCCCCCTACTTCGC
CCCTTCAATATTACTCGCGAAGGATTGCGTGTCAGCTACTGCGCACTAAA
ACAAAGATTTCTGCTCGGTGGGGGCACCATATAGTGCCCTTCGAGGAATG
CGGCCGCTGTAGCAAGATGGTGGATAAATCGACATCAAGAATTGTTCGTG
TATTGAATCTTCGAGCGCTCGTTGTTTTCCCCTGCTAGAGACATGTGCTG
TAGTATCCGAGAGACGCTTCGATGTGGGATTTGTTCCGAGGTCCGTTGTC
CGTCTCTCTGCGAGCCGTCACTGATAAGCGCAGCGTAGACGAGTTGTTGC
GGCGTATCGGCAAAAGTAACTCATGCATGCCGAGCGTACCCTATGTCTCT
CGTAGTTTTTTTGCGGGGCGATGTTGAGTCGCGGGAAATAGTTTGTTGCC
GACTCGACCAGGGCTTCGATCCCACCCGCGGCGTCGCGGCGTCCTGGCAA
CCATGAGGTGTCTAGTGAAAAAACCCACTCGACCACCTTCAAATGTGTCC
GTCTCGCGCGAAAAAACACGGCAGATTGTATTGTATGCACGAGGCCGCGG
AGGCGCAGGGGGTGGTGACGCAGTCGCCAGAGGAGAGCAGGGAGCCTGCT
CGAGGGTCAACGTCGTCCGACAAGTCCCGTCCGAGGCTGATGAGGGGGTT
GTCGCGAAAAAAATCCGGAAAGGTGCGTCGGCTTTTGTTTATTACCAAGG
GTTTACGGTACTCGGCGTGACTATTTAAGCGAGAAGTGTTTATATCCGGT
TTTTGAAGAGTTTTTCTAGAGCGGCGTTGGCGTCTTTTGTTTCCTTGCAT
TGATGTGTAAAAATCGTTTTGTGTCACGTCGAAGGTGGCAATATATTGCT
GCTGGCTTGAGTTTCTGCGTTGTCTATATTATTAATATTTTTAGTCTGGG
TGTGCTTTTTCATTTCTGTCTTTTGTCCCCGTCGTCCTATCACAACCTCG
CCGCATACTCCGCTCGAAACCCGTGATATGTCCGCCATGTAGTACTCGAA
AACCGTCGGAGCCGCGCACGCCTCAAAAACGGCGTCGACCCCCGAAAAGA
AAAAAAAAGCAGAATGCCCCACGGACAAGTGTCGAGATCCGATCACCCTA
GATGACCTCGGATCGTGGACATGGGATTTCCACGCCTCGGAAGCGGCAAC
TCCGCCCGTTTCGTGCGGGGGAACCGCGGCCCCGAAGAACGGCGGCGACA
TGACCAAGCGCAGCGGTGGTGGTCGCGCTGGTCGAACCGGAAGCAAGGGG
CGTTCCAGGCCGGGAAAGGGAAAGGGAGGGTTCCGAGCTGGCGGAGCGGA
TGGAGGCACCATTAGCTGCAGCGGGGGCGGTGGCAGCAGCCCGGTAGTGA
CGTACAACGTGGAGTCGCTGGTGTTCTACTTGCTGGAGTCAGGAGATTTT
CAGGTAATGGACGTGTTTTGGTTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig63361:120..2246-

>mRNA_H-elongata_contig63361.13915.1 ID=mRNA_H-elongata_contig63361.13915.1|Name=mRNA_H-elongata_contig63361.13915.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at H-elongata_contig63361:120..2246- (Himanthalia elongata Himel1 dioecious)
ATGCTGCGGAAGGGCTGGGTCACAAGGGAAGAGTACGGGCAGCTTCTGAT
GGGGGATAGGTGGGAGGAAGAGGGCGAGAGAGCGAGATTAGTTTTTTGTA
GGAACTATTTGACAAGTTATGCTGCGGAAGGGCTGGGTCACAAGGGAAGA
GTACGGGCAGCTTCTGATGGGGGATAGGTGGGAGGAAGAGGGCGAGAGAG
CGAGATTAGTTTTTTGTAGGAACTATTTGACAAGTTTGAAAAAACCCACT
CGACCACCTTCAAATGTGTCCGTCTCGCGCGAAAAAACACGGCAGATTGT
ATTGTATGCACGAGGCCGCGGAGGCGCAGGGGGTGGTGACGCAGTCGCCA
GAGGAGAGCAGGGAGCCTGCTCGAGGGTCAACTGAAAAAACCCACTCGAC
CACCTTCAAATGTGTCCGTCTCGCGCGAAAAAACACGGCAGATTGTATTG
TATGCACGAGGCCGCGGAGGCGCAGGGGGTGGTGACGCAGTCGCCAGAGG
AGAGCAGGGAGCCTGCTCGAGGGTCAACTACTCGAAAACCGTCGGAGCCG
CGCACGCCTCAAAAACGGCGTCGACCCCCGAAAAGAAAAAAAAAGCAGAA
TGCCCCACGGACAAGTGTCGAGATCCGATCACCCTAGATGACCTCGGATC
GTGGACATGGGATTTCCACGCCTCGGAAGCGGCAACTCCGCCCGTTTCGT
GCGGGGGAACCGCGGCCCCGAAGAACGGCGGCGACATGACCAAGCGCAGC
GGTGGTGGTCGCGCTGGTCGAACCGGAAGCAAGGGGCGTTCCAGGCCGGG
AAAGGGAAAGGGAGGGTTCCGAGCTGGCGGAGCGGATGGAGGCACCATTA
GCTGCAGCGGGGGCGGTGGCAGCAGCCCGGTAGTGACGTACAACGTGGAG
TCGCTGGTGTTCTACTTGCTGGAGTCAGGAGATTTTCAGGTAATGGACGT
GTTTTGGTTTTGATACTCGAAAACCGTCGGAGCCGCGCACGCCTCAAAAA
CGGCGTCGACCCCCGAAAAGAAAAAAAAAGCAGAATGCCCCACGGACAAG
TGTCGAGATCCGATCACCCTAGATGACCTCGGATCGTGGACATGGGATTT
CCACGCCTCGGAAGCGGCAACTCCGCCCGTTTCGTGCGGGGGAACCGCGG
CCCCGAAGAACGGCGGCGACATGACCAAGCGCAGCGGTGGTGGTCGCGCT
GGTCGAACCGGAAGCAAGGGGCGTTCCAGGCCGGGAAAGGGAAAGGGAGG
GTTCCGAGCTGGCGGAGCGGATGGAGGCACCATTAGCTGCAGCGGGGGCG
GTGGCAGCAGCCCGGTAGTGACGTACAACGTGGAGTCGCTGGTGTTCTAC
TTGCTGGAGTCAGGAGATTTTCAGGTAATGGACGTGTTTTGGTTTTGA
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