mRNA_H-elongata_contig63113.13888.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63113.13888.1
Unique NamemRNA_H-elongata_contig63113.13888.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63113.13888.1 vs. uniprot
Match: A0A6H5JT76_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT76_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.480e-43
Identity = 139/293 (47.44%), Postives = 177/293 (60.41%), Query Frame = 1 
Query:    1 RWKEALELLEEMIAGGSGNSKSSLAGRGVAPSIVSYNAAISACARGRKPEFALELLEDMRQRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMQREXXXXXXXXXXXXXXXXXXXXXXXXXXAVLEQVRAAGSPLSPSSLTGILTAXXXXXXXXXXXXXXXXXXXXXXAVSLDGRVVVPPTTAYAAAAKACARAGQGARARALIAELELAATTSSGG---VEKPTIECYNAVIAGFAIAGDMDDALKILREEVPKAGLRANTGSYNHLLTGCARAGRWETALALLNEQRTG 870
            RWKEA+ELLEEMIA G+ ++     G  V PS+VSYNAAI+AC+R  K   AL LL++M  RS    XXXXXXXXXXXXXXXXXXXXXXXXX  M+                             VLEQVR      S S++  +LT+                       ++  GR+  PP  AYAAAA ACARAGQG RARALIAEL+      +GG    ++PT+ECY+AV+ G A+AGD  +AL+IL+ +VPKAGL+ NT  +NH+L G A+ G W+TA+ +L+EQR+G
Sbjct:  196 RWKEAIELLEEMIAAGNDSN----GGPKVTPSVVSYNAAITACSRANKVPAALRLLDEMSSRSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXMRAAGMEPDLVCLKGAMEACRSKGAPKEAGVVLEQVRELDPRPSASTMADVLTSAIAACVTEGAWEQATDWLTDIR-MARGGRL--PPPEAYAAAANACARAGQGVRARALIAELD------NGGKDEAQRPTLECYDAVVLGSALAGDPKEALRILKVDVPKAGLQPNTQGFNHVLQGFAKVGDWKTAVTVLDEQRSG 475
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63113.13888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT76_9PHAE2.480e-4347.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63113contigH-elongata_contig63113:632..2571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue4e-39
Seed eggNOG ortholog2880.D7FIX3
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-07_007800.1
Exons2
Model size870
Cds size870
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931014.90799-CDS-H-elongata_contig63113:631..10181622931014.90799-CDS-H-elongata_contig63113:631..1018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63113 632..1018 +
1691679662.8368008-CDS-H-elongata_contig63113:631..10181691679662.8368008-CDS-H-elongata_contig63113:631..1018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63113 632..1018 +
1622931014.924457-CDS-H-elongata_contig63113:2088..25711622931014.924457-CDS-H-elongata_contig63113:2088..2571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63113 2089..2571 +
1691679662.8508246-CDS-H-elongata_contig63113:2088..25711691679662.8508246-CDS-H-elongata_contig63113:2088..2571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63113 2089..2571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63113.13888.1prot_H-elongata_contig63113.13888.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63113 632..2571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63113.13888.1

>prot_H-elongata_contig63113.13888.1 ID=prot_H-elongata_contig63113.13888.1|Name=mRNA_H-elongata_contig63113.13888.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=290bp
RWKEALELLEEMIAGGSGNSKSSLAGRGVAPSIVSYNAAISACARGRKPE
FALELLEDMRQRSGISPDLYSYAAALSALAKAGKPARALKLLDEMQREGV
APDSVCFAAAMEACETRGAWREAAAVLEQVRAAGSPLSPSSLTGILTAAI
ASCVAEGAWERAIDLLDDIRAVSLDGRVVVPPTTAYAAAAKACARAGQGA
RARALIAELELAATTSSGGVEKPTIECYNAVIAGFAIAGDMDDALKILRE
EVPKAGLRANTGSYNHLLTGCARAGRWETALALLNEQRTG
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mRNA from alignment at H-elongata_contig63113:632..2571+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63113.13888.1 ID=mRNA_H-elongata_contig63113.13888.1|Name=mRNA_H-elongata_contig63113.13888.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1940bp|location=Sequence derived from alignment at H-elongata_contig63113:632..2571+ (Himanthalia elongata Himel1 dioecious)
AGATGGAAGGAAGCTCTGGAGCTCCTAGAAGAAATGATCGCCGGCGGCAG
CGGCAATAGCAAAAGCTCACTAGCCGGTCGAGGTGTGGCGCCCTCTATCG
TGAGCTACAACGCCGCCATCTCGGCTTGCGCCAGGGGGCGCAAGCCTGAG
TTCGCGCTTGAGCTCCTCGAGGATATGCGGCAAAGGTCGGGCATCTCGCC
CGATCTGTACAGCTACGCGGCCGCGCTGTCGGCACTGGCCAAGGCTGGCA
AGCCGGCGCGCGCGCTGAAGCTGCTGGACGAGATGCAGCGAGAAGGGGTC
GCGCCGGACTCCGTATGCTTCGCGGCGGCAATGGAGGCGTGCGAGACCCG
GGGTGCGTGGAGAGAAGCGGCCGCGGTTCTTGAGCAGGTGTCTGGTACCT
CATACGACGCTAATATGTATGTGTGTATGTGTGTAAGTGTATCTGGCGAG
TACGCTCCCAGGATGTATGATTCGATTTGCACTGGGGTTATGACCACTAG
TATATTTTCTCAACCAAGTGTCTTCTCCTTAAGCTCCCAGGAGAGAAACA
TGCCCATTCCACCGCCTGCGAGCTGCAGGGTGCCCTGAGCTCAGAGACCT
TGGTCAAAGAGCCTTGTCGCTCTACCCAAAAGGATGATTTGTATTATATT
TTGTAGGATGTCTGCTGAACAATGGTTGATTGTTAGAAACCCTGCAGCAA
CCATATACTATACTTATGACAGTACTCCGTCAGAATTATGAATGAGCCGA
CTATAGCCTGAATGTATCACGCAGATTTTGTTGTGCATGTGGTGTGCGTA
TGTACGCACAGTAAGATCAACCAGATTTGGTTGTCTTCTGCTCGTGGTCA
GCTAAACACGGAAAATTAATTAATTTGGTCTCGCGAGACGGGTTCAGCGG
TCCCGTCCCACGTCAGCCTGCTCATTCTCTCAACCAGACTGATTCTGGTG
CGTACTCCTGCGATCCTCTCGTTTTCCGCGACGGCGTCCATCTCTACCGT
CAACCGCCATCGGGCCAATCCCGATTTCATCAGGTCACGTAATTGCGTAC
CGATGGCGTTTACTACCGAGAGTCCGCCGGCACTGAGCCAATAGTCCTCA
AGGTAGTTTGAGTAACGGGTCCAGCCTATTGGGGTAATACCATGGAGCAA
TTATTGTACGCCTCTCTTTTCCCACACCCACTATGGGTAGAGTGGGTATG
ACGGTTTACGCTTATGCATTCACGTGAATACAAAAAATAGTATAGTCGCG
CCCGTTAAATGTGCAATAAATGGTTACTCGGTGTGTATCGCATTATCCCA
TGTCATGTCCGTTTTGGCGTAGTAACCGCAATAATGACGACTAATTTTCA
ACTATCATCGTTATGAAACGCCTATTTCTATGCCTGTTAGGATACGACAT
GTGTTTAACACCAGTACCACCCCGCTTCCCATCACCACACGCCACCCTCC
CAATCAGGTACGCGCGGCTGGTTCTCCTCTCAGCCCAAGCTCGCTCACTG
GCATCCTCACCGCGGCAATTGCGTCCTGCGTCGCCGAGGGCGCGTGGGAG
CGGGCGATAGATCTCCTTGATGACATACGCGCGGTGAGTCTGGACGGCCG
CGTCGTGGTGCCACCGACTACCGCATACGCCGCGGCAGCAAAGGCCTGCG
CTCGCGCCGGCCAAGGGGCCCGGGCCCGAGCCCTGATCGCGGAGCTAGAA
TTGGCGGCGACGACTAGCAGCGGTGGAGTAGAGAAGCCGACGATCGAGTG
CTACAACGCGGTCATAGCCGGCTTTGCGATCGCGGGAGACATGGACGACG
CCCTGAAGATTTTGAGGGAGGAGGTGCCGAAGGCAGGACTAAGGGCGAAC
ACCGGGAGCTACAACCACCTCCTCACCGGGTGCGCGCGGGCGGGACGATG
GGAGACCGCGTTAGCGCTGTTGAACGAGCAGCGAACGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig63113:632..2571+

>mRNA_H-elongata_contig63113.13888.1 ID=mRNA_H-elongata_contig63113.13888.1|Name=mRNA_H-elongata_contig63113.13888.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1740bp|location=Sequence derived from alignment at H-elongata_contig63113:632..2571+ (Himanthalia elongata Himel1 dioecious)
AGATGGAAGGAAGCTCTGGAGCTCCTAGAAGAAATGATCGCCGGCGGCAG
CGGCAATAGCAAAAGCTCACTAGCCGGTCGAGGTGTGGCGCCCTCTATCG
TGAGCTACAACGCCGCCATCTCGGCTTGCGCCAGGGGGCGCAAGCCTGAG
TTCGCGCTTGAGCTCCTCGAGGATATGCGGCAAAGGTCGGGCATCTCGCC
CGATCTGTACAGCTACGCGGCCGCGCTGTCGGCACTGGCCAAGGCTGGCA
AGCCGGCGCGCGCGCTGAAGCTGCTGGACGAGATGCAGCGAGAAGGGGTC
GCGCCGGACTCCGTATGCTTCGCGGCGGCAATGGAGGCGTGCGAGACCCG
GGGTGCGTGGAGAGAAGCGGCCGCGGTTCTTGAGCAGAGATGGAAGGAAG
CTCTGGAGCTCCTAGAAGAAATGATCGCCGGCGGCAGCGGCAATAGCAAA
AGCTCACTAGCCGGTCGAGGTGTGGCGCCCTCTATCGTGAGCTACAACGC
CGCCATCTCGGCTTGCGCCAGGGGGCGCAAGCCTGAGTTCGCGCTTGAGC
TCCTCGAGGATATGCGGCAAAGGTCGGGCATCTCGCCCGATCTGTACAGC
TACGCGGCCGCGCTGTCGGCACTGGCCAAGGCTGGCAAGCCGGCGCGCGC
GCTGAAGCTGCTGGACGAGATGCAGCGAGAAGGGGTCGCGCCGGACTCCG
TATGCTTCGCGGCGGCAATGGAGGCGTGCGAGACCCGGGGTGCGTGGAGA
GAAGCGGCCGCGGTTCTTGAGCAGGTACGCGCGGCTGGTTCTCCTCTCAG
CCCAAGCTCGCTCACTGGCATCCTCACCGCGGCAATTGCGTCCTGCGTCG
CCGAGGGCGCGTGGGAGCGGGCGATAGATCTCCTTGATGACATACGCGCG
GTGAGTCTGGACGGCCGCGTCGTGGTGCCACCGACTACCGCATACGCCGC
GGCAGCAAAGGCCTGCGCTCGCGCCGGCCAAGGGGCCCGGGCCCGAGCCC
TGATCGCGGAGCTAGAATTGGCGGCGACGACTAGCAGCGGTGGAGTAGAG
AAGCCGACGATCGAGTGCTACAACGCGGTCATAGCCGGCTTTGCGATCGC
GGGAGACATGGACGACGCCCTGAAGATTTTGAGGGAGGAGGTGCCGAAGG
CAGGACTAAGGGCGAACACCGGGAGCTACAACCACCTCCTCACCGGGTGC
GCGCGGGCGGGACGATGGGAGACCGCGTTAGCGCTGTTGAACGAGCAGCG
AACGGGTGTACGCGCGGCTGGTTCTCCTCTCAGCCCAAGCTCGCTCACTG
GCATCCTCACCGCGGCAATTGCGTCCTGCGTCGCCGAGGGCGCGTGGGAG
CGGGCGATAGATCTCCTTGATGACATACGCGCGGTGAGTCTGGACGGCCG
CGTCGTGGTGCCACCGACTACCGCATACGCCGCGGCAGCAAAGGCCTGCG
CTCGCGCCGGCCAAGGGGCCCGGGCCCGAGCCCTGATCGCGGAGCTAGAA
TTGGCGGCGACGACTAGCAGCGGTGGAGTAGAGAAGCCGACGATCGAGTG
CTACAACGCGGTCATAGCCGGCTTTGCGATCGCGGGAGACATGGACGACG
CCCTGAAGATTTTGAGGGAGGAGGTGCCGAAGGCAGGACTAAGGGCGAAC
ACCGGGAGCTACAACCACCTCCTCACCGGGTGCGCGCGGGCGGGACGATG
GGAGACCGCGTTAGCGCTGTTGAACGAGCAGCGAACGGGT
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