mRNA_H-elongata_contig63028.13881.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63028.13881.1
Unique NamemRNA_H-elongata_contig63028.13881.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63028.13881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63028contigH-elongata_contig63028:3082..3465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size361
Cds size228
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63028.13881.1prot_H-elongata_contig63028.13881.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63028 3213..3465 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931014.0124636-UTR-H-elongata_contig63028:3081..32121622931014.0124636-UTR-H-elongata_contig63028:3081..3212Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63028 3082..3212 +
1691679662.499794-UTR-H-elongata_contig63028:3081..32121691679662.499794-UTR-H-elongata_contig63028:3081..3212Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63028 3082..3212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931014.0323236-CDS-H-elongata_contig63028:3212..33641622931014.0323236-CDS-H-elongata_contig63028:3212..3364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63028 3213..3364 +
1691679662.5079885-CDS-H-elongata_contig63028:3212..33641691679662.5079885-CDS-H-elongata_contig63028:3212..3364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63028 3213..3364 +
1622931014.0551534-CDS-H-elongata_contig63028:3389..34651622931014.0551534-CDS-H-elongata_contig63028:3389..3465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63028 3390..3465 +
1691679662.516685-CDS-H-elongata_contig63028:3389..34651691679662.516685-CDS-H-elongata_contig63028:3389..3465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63028 3390..3465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63028.13881.1

>prot_H-elongata_contig63028.13881.1 ID=prot_H-elongata_contig63028.13881.1|Name=mRNA_H-elongata_contig63028.13881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MRRYCGKGEKGQGGGLAMFLAHFSYQRYIKYGTIQPIKHGTSQPIKHGTL
YQSNMVHFSQSSAVYFGQSNTVYFRP
back to top

mRNA from alignment at H-elongata_contig63028:3082..3465+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63028.13881.1 ID=mRNA_H-elongata_contig63028.13881.1|Name=mRNA_H-elongata_contig63028.13881.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=384bp|location=Sequence derived from alignment at H-elongata_contig63028:3082..3465+ (Himanthalia elongata Himel1 dioecious)
AGGACCTTCGCCTCTTTGGTCGTTGCTGCCCATCGGGTTGCGACGTTTGC
TGCGGGCATGGATAGAGCACAGTATTAATAGTATTAAACCTCACGGGAAG
ATCATACATCACAAATGCCCCAAACGATTAAATGAGGCGTTATTGTGGTA
AGGGTGAAAAGGGGCAGGGGGGGGGTCTTGCGATGTTTTTGGCACACTTT
TCTTACCAGCGGTACATCAAATACGGTACGATTCAGCCAATCAAACACGG
TACATCTCAGCCAATCAAACACGGTACACTTTAGCCAATCAAACACAATA
CACTTCAGCCAATCAAACATGGTACATTTCAGTCAATCAAGCGCGGTATA
CTTCGGCCAATCAAACACGGTATACTTTCGACCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig63028:3082..3465+

>mRNA_H-elongata_contig63028.13881.1 ID=mRNA_H-elongata_contig63028.13881.1|Name=mRNA_H-elongata_contig63028.13881.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig63028:3082..3465+ (Himanthalia elongata Himel1 dioecious)
ATGAGGCGTTATTGTGGTAAGGGTGAAAAGGGGCAGGGGGGGGGTCTTGC
GATGTTTTTGGCACACTTTTCTTACCAGCGGTACATCAAATACGGTACGA
TTCAGCCAATCAAACACGGTACATCTCAGCCAATCAAACACGGTACACTT
TAATGAGGCGTTATTGTGGTAAGGGTGAAAAGGGGCAGGGGGGGGGTCTT
GCGATGTTTTTGGCACACTTTTCTTACCAGCGGTACATCAAATACGGTAC
GATTCAGCCAATCAAACACGGTACATCTCAGCCAATCAAACACGGTACAC
TTTACCAATCAAACATGGTACATTTCAGTCAATCAAGCGCGGTATACTTC
GGCCAATCAAACACGGTATACTTTCGACCTCCAATCAAACATGGTACATT
TCAGTCAATCAAGCGCGGTATACTTCGGCCAATCAAACACGGTATACTTT
CGACCT
back to top