mRNA_H-elongata_contig6299.13877.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6299.13877.1
Unique NamemRNA_H-elongata_contig6299.13877.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig6299.13877.1 vs. uniprot
Match: D7G468_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G468_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 7.140e-41
Identity = 74/114 (64.91%), Postives = 90/114 (78.95%), Query Frame = 1 
Query:   19 LLKTGPYKVNGVPLRRVNQAYVIATSMKIDIANLTIPVEDDSYFARNESAKKTDEDNFFAQASKGAIVSEKRKADQKIVDSELMTKVSAQPLLKEFLCAMFSLKKGDRPHEMLF 360
            LL TGPY VNGVP+RRVNQAYVIATSM +D++ +TIP  DDSYF R E A KTDED FF Q +K + VS+KRKADQK VD+ ++  ++  P+LK +L A FSLKKGDRPHEM+F
Sbjct:   67 LLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTVSDKRKADQKTVDAGVLAAMT-NPMLKAYLNAKFSLKKGDRPHEMIF 179
[Close]
BLAST of mRNA_H-elongata_contig6299.13877.1 vs. uniprot
Match: A0A835YT51_9STRA (60S ribosomal protein L6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT51_9STRA)

HSP 1 Score: 140 bits (352), Expect = 6.240e-37
Identity = 70/114 (61.40%), Postives = 88/114 (77.19%), Query Frame = 1 
Query:   19 LLKTGPYKVNGVPLRRVNQAYVIATSMKIDIANLTIPVEDDSYFARNESAKKTDEDNFFAQASKGAIVSEKRKADQKIVDSELMTKVSAQPLLKEFLCAMFSLKKGDRPHEMLF 360
            LL TGPYKVNGVPLRRVNQAYVIATS K+D++ + +   DD+YFAR   AKKT ED FFAQASK ++VS+++K DQ +VD+ ++  +S   LLK +L A FSL K DRPHEM+F
Sbjct:   72 LLVTGPYKVNGVPLRRVNQAYVIATSTKLDVSKVDVSAIDDAYFARAPEAKKTAEDAFFAQASKESVVSDQKKKDQDVVDASILAGLSKDKLLKAYLNAKFSLTKKDRPHEMVF 185
[Close]
BLAST of mRNA_H-elongata_contig6299.13877.1 vs. uniprot
Match: D0MZV7_PHYIT (60S ribosomal protein L6 n=12 Tax=Phytophthora TaxID=4783 RepID=D0MZV7_PHYIT)

HSP 1 Score: 138 bits (348), Expect = 6.570e-36
Identity = 68/115 (59.13%), Postives = 87/115 (75.65%), Query Frame = 1 
Query:   16 LLLKTGPYKVNGVPLRRVNQAYVIATSMKIDIANLTIPVEDDSYFARNESAKKTDEDNFFAQASKGAIVSEKRKADQKIVDSELMTKVSAQPLLKEFLCAMFSLKKGDRPHEMLF 360
            LLL TGPYKVNGVPLRRVNQ+YVIATS K++I  L +P  DD+YFA+ ++AKK+ E+ FFAQ+S   ++ E+RK DQK VDS L+ K+ A+P LK +L A FSL K DR H + F
Sbjct:  106 LLLVTGPYKVNGVPLRRVNQSYVIATSTKVNIEGLALPAIDDAYFAKEKAAKKSKEEQFFAQSSTAPVIPEQRKKDQKAVDSALIKKLEAEPFLKSYLNAKFSLTKNDRAHALKF 220
[Close]
BLAST of mRNA_H-elongata_contig6299.13877.1 vs. uniprot
Match: A0A0P1B5I3_PLAHL (60S ribosomal protein L6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B5I3_PLAHL)

HSP 1 Score: 138 bits (347), Expect = 1.000e-35
Identity = 68/115 (59.13%), Postives = 86/115 (74.78%), Query Frame = 1 
Query:   16 LLLKTGPYKVNGVPLRRVNQAYVIATSMKIDIANLTIPVEDDSYFARNESAKKTDEDNFFAQASKGAIVSEKRKADQKIVDSELMTKVSAQPLLKEFLCAMFSLKKGDRPHEMLF 360
            LLL TGPYKVNGVP+RRVNQ+YVIATS K++I  L +P  DD+YFA+ ++AKK  ED FFAQ+S   ++ E+RK DQK VDS L+ K+ A+P LK +L A FSL K DR H + F
Sbjct:  109 LLLVTGPYKVNGVPIRRVNQSYVIATSTKVNIEGLNLPAIDDAYFAKEKAAKKNKEDQFFAQSSAAPVIPEQRKQDQKAVDSVLLKKLDAEPFLKAYLNAKFSLTKNDRVHTLKF 223
[Close]
BLAST of mRNA_H-elongata_contig6299.13877.1 vs. uniprot
Match: A0A6G0WU17_9STRA (60S ribosomal protein L6 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WU17_9STRA)

HSP 1 Score: 136 bits (342), Expect = 8.190e-35
Identity = 69/114 (60.53%), Postives = 90/114 (78.95%), Query Frame = 1 
Query:   19 LLKTGPYKVNGVPLRRVNQAYVIATSMKIDIANLTIPVEDDSYFARNESAKKTDEDNFFAQASKGAIVSEKRKADQKIVDSELMTKVSAQPLLKEFLCAMFSLKKGDRPHEMLF 360
            LL TGPYKVNGVPLRRVNQA+VIATS K+DI+++ +P  +D+YFA+ ++  K DE+ FFAQ+S  AIVSE+RK DQK VD+ L+ K++A PLLK++L A FSL K  R HE+ F
Sbjct:  125 LLVTGPYKVNGVPLRRVNQAFVIATSTKVDISDVKLPEINDAYFAKEKTHAKKDEEAFFAQSSTAAIVSEQRKKDQKEVDAALIKKINATPLLKQYLNAKFSLSKTQRVHELKF 238
[Close]
BLAST of mRNA_H-elongata_contig6299.13877.1 vs. uniprot
Match: B8CBR7_THAPS (60S ribosomal protein L6 (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBR7_THAPS)

HSP 1 Score: 132 bits (333), Expect = 3.320e-34
Identity = 68/116 (58.62%), Postives = 88/116 (75.86%), Query Frame = 1 
Query:   16 LLLKTGPYKVNGVPLRRVNQAYVIATSMKIDIANLTIPVEDDSYFARNESAKKTDEDNFFAQ-ASKGAIVSEKRKADQKIVDSELMTKVSAQPLLKEFLCAMFSLKKGDRPHEMLF 360
            LLL TGPYK+NGVPLRRVNQAYVIATS K+D++   +   DD+YFAR +S     E+ FFA  A+K A+VS++RKADQK VD+ ++  V + PL+K +L + FSLKK DRPHEM+F
Sbjct:   63 LLLVTGPYKINGVPLRRVNQAYVIATSTKVDVSGADVSKIDDAYFARVKSDSAEGEEEFFANDAAKPAVVSDQRKADQKKVDAAILKAVESTPLMKNYLGSNFSLKKHDRPHEMIF 178
[Close]
BLAST of mRNA_H-elongata_contig6299.13877.1 vs. uniprot
Match: A0A485KCY7_9STRA (60S ribosomal protein L6 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCY7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 8.550e-34
Identity = 68/114 (59.65%), Postives = 88/114 (77.19%), Query Frame = 1 
Query:   19 LLKTGPYKVNGVPLRRVNQAYVIATSMKIDIANLTIPVEDDSYFARNESAKKTDEDNFFAQASKGAIVSEKRKADQKIVDSELMTKVSAQPLLKEFLCAMFSLKKGDRPHEMLF 360
            LL TGPYKVNGVPLRRVNQA+VIATS KIDI+++ +P  +D+YFA+ ++  K DE+ FFAQ+S  AIVSE+RK DQK VD+ L+ K++A   LK +L A FSL K D+ HE+ F
Sbjct:  124 LLVTGPYKVNGVPLRRVNQAFVIATSTKIDISDVKLPELNDAYFAKEKTHAKKDEEQFFAQSSTSAIVSEQRKKDQKAVDAALLKKINATAHLKHYLNAKFSLTKNDKVHELKF 237
[Close]
BLAST of mRNA_H-elongata_contig6299.13877.1 vs. uniprot
Match: A0A7S0C6J2_9STRA (60S ribosomal protein L6 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C6J2_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.170e-33
Identity = 65/116 (56.03%), Postives = 87/116 (75.00%), Query Frame = 1 
Query:   16 LLLKTGPYKVNGVPLRRVNQAYVIATSMKIDIANLTIPVEDDSYFARNESAKKTDEDNFFA-QASKGAIVSEKRKADQKIVDSELMTKVSAQPLLKEFLCAMFSLKKGDRPHEMLF 360
            LLL +GPY+VNGVP+RRVNQAYVIATS K++++ + +   +D YFAR  S     E+ FFA  A K A+VS+KRK DQK +DS LM  V + PLLKE+L + FSL++GD+PH+M+F
Sbjct:    2 LLLVSGPYQVNGVPIRRVNQAYVIATSTKVNVSGVDVSSINDKYFARESSTTDEGEEEFFAGDAPKAAVVSDKRKEDQKKIDSVLMKNVESVPLLKEYLGSKFSLRQGDKPHKMVF 117
[Close]
BLAST of mRNA_H-elongata_contig6299.13877.1 vs. uniprot
Match: A0A7S4V8G6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V8G6_9STRA)

HSP 1 Score: 131 bits (330), Expect = 3.130e-33
Identity = 67/116 (57.76%), Postives = 89/116 (76.72%), Query Frame = 1 
Query:   16 LLLKTGPYKVNGVPLRRVNQAYVIATSMKIDIANLTIPVEDDSYFARNESAKKTDEDNFFAQ-ASKGAIVSEKRKADQKIVDSELMTKVSAQPLLKEFLCAMFSLKKGDRPHEMLF 360
            LLL +GPYK+NGVPLRRV+QAYVIAT+  +D++ + +   DD+YFAR  S+ +  ED FFA  A+K A+VSE RKADQK VD+ L+  V A P+LK++L A FSL KGD+PH+M+F
Sbjct:  107 LLLVSGPYKINGVPLRRVHQAYVIATTTTVDVSAIDVSAIDDAYFARAASSGEEGEDEFFANDAAKPAVVSETRKADQKKVDAALLKAVEAVPMLKQYLNAKFSLSKGDKPHKMVF 222
[Close]
BLAST of mRNA_H-elongata_contig6299.13877.1 vs. uniprot
Match: A0A484DQP3_BRELC (60S ribosomal protein L6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQP3_BRELC)

HSP 1 Score: 131 bits (330), Expect = 3.210e-33
Identity = 65/115 (56.52%), Postives = 85/115 (73.91%), Query Frame = 1 
Query:   16 LLLKTGPYKVNGVPLRRVNQAYVIATSMKIDIANLTIPVEDDSYFARNESAKKTDEDNFFAQASKGAIVSEKRKADQKIVDSELMTKVSAQPLLKEFLCAMFSLKKGDRPHEMLF 360
            LLL TGPYKVNGVPLRRVNQ+YVIATS K++I  L +P  DD+YFA+ + +K + E+ FFAQ++   ++ E+RK DQK VDS L+ K+ A+P LK +L A FSL K DR H + F
Sbjct:  109 LLLVTGPYKVNGVPLRRVNQSYVIATSTKVNIEGLELPAVDDAYFAKEKISKSSKEEQFFAQSNVAPVIPEQRKNDQKSVDSALLKKLDAEPFLKAYLNAKFSLTKNDRVHALKF 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6299.13877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G468_ECTSI7.140e-4164.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YT51_9STRA6.240e-3761.4060S ribosomal protein L6 n=1 Tax=Tribonema minus T... [more]
D0MZV7_PHYIT6.570e-3659.1360S ribosomal protein L6 n=12 Tax=Phytophthora Tax... [more]
A0A0P1B5I3_PLAHL1.000e-3559.1360S ribosomal protein L6 n=1 Tax=Plasmopara halste... [more]
A0A6G0WU17_9STRA8.190e-3560.5360S ribosomal protein L6 n=1 Tax=Aphanomyces eutei... [more]
B8CBR7_THAPS3.320e-3458.6260S ribosomal protein L6 (Fragment) n=1 Tax=Thalas... [more]
A0A485KCY7_9STRA8.550e-3459.6560S ribosomal protein L6 n=1 Tax=Aphanomyces stell... [more]
A0A7S0C6J2_9STRA1.170e-3356.0360S ribosomal protein L6 n=1 Tax=Proboscia inermis... [more]
A0A7S4V8G6_9STRA3.130e-3357.76Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A484DQP3_BRELC3.210e-3356.5260S ribosomal protein L6 n=1 Tax=Bremia lactucae T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6299contigH-elongata_contig6299:7725..8899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue2.2e-20
Seed eggNOG ortholog2880.D7G468
Preferred nameRPL6
KEGG koko:K02934
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsCOG2163@1,KOG1694@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog description60S ribosomal protein L6E
Ec32 orthologEc-02_001470.1
Exons2
Model size981
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6299.13877.1prot_H-elongata_contig6299.13877.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6299 8343..8803 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.5491655-UTR-H-elongata_contig6299:7724..83421622931013.5491655-UTR-H-elongata_contig6299:7724..8342Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6299 7725..8342 -
1691679662.2995238-UTR-H-elongata_contig6299:7724..83421691679662.2995238-UTR-H-elongata_contig6299:7724..8342Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6299 7725..8342 -
1622931013.6209238-UTR-H-elongata_contig6299:8803..88991622931013.6209238-UTR-H-elongata_contig6299:8803..8899Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6299 8804..8899 -
1691679662.3317068-UTR-H-elongata_contig6299:8803..88991691679662.3317068-UTR-H-elongata_contig6299:8803..8899Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6299 8804..8899 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.5677874-CDS-H-elongata_contig6299:8342..84951622931013.5677874-CDS-H-elongata_contig6299:8342..8495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6299 8343..8495 -
1691679662.3126516-CDS-H-elongata_contig6299:8342..84951691679662.3126516-CDS-H-elongata_contig6299:8342..8495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6299 8343..8495 -
1622931013.587392-CDS-H-elongata_contig6299:8689..88031622931013.587392-CDS-H-elongata_contig6299:8689..8803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6299 8690..8803 -
1691679662.3225195-CDS-H-elongata_contig6299:8689..88031691679662.3225195-CDS-H-elongata_contig6299:8689..8803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6299 8690..8803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6299.13877.1

>prot_H-elongata_contig6299.13877.1 ID=prot_H-elongata_contig6299.13877.1|Name=mRNA_H-elongata_contig6299.13877.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MKIDIANLTIPVEDDSYFARNESAKKTDEDNFFAQASKGAIVSEKRKADQ
KIVDSELMTKVSAQPLLKEFLCAMFSLKKGDRPHEMLF*
back to top

mRNA from alignment at H-elongata_contig6299:7725..8899-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6299.13877.1 ID=mRNA_H-elongata_contig6299.13877.1|Name=mRNA_H-elongata_contig6299.13877.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1175bp|location=Sequence derived from alignment at H-elongata_contig6299:7725..8899- (Himanthalia elongata Himel1 dioecious)
CACTTTTCAAAATTGCTCTTGTTGAAAACAGGTCCCTACAAGGTCAATGG
GGTTCCTCTCCGGCGTGTCAACCAAGCATATGTGATAGCGACGTCGATGA
AAATCGATATCGCGAATCTCACGATCCCCGTCGAAGATGACTCGTACTTC
GCACGTAATGAGTCGGCAAAGAAGACTGATGAGGATAACTTTTTCGCCCA
GGCATCGAAGGTGGGCGAACGTGTCACAATGGAATACTTGGAAGGTGTGT
TGATGGCAAGTGGGATTGATATTTTTACAAAGAAAACAATTCGCCATCTT
TCCGGTACCACCGACATGACGGTGCTCTACGGAAAGAAGGCGCCTCCAGC
AAAGTTCCCATTTCGTTTCTTCGTTCCGTACCCTTTCGTGATTATTTTGT
GCAGGGCGCCATTGTTTCCGAGAAGCGCAAGGCTGACCAAAAGATCGTGG
ACTCCGAACTCATGACCAAGGTGTCTGCCCAGCCTCTCCTGAAGGAGTTT
CTATGTGCAATGTTTTCCCTGAAGAAGGGAGACCGCCCGCACGAAATGCT
TTTCTAGGTTATCAGGCTGGGCTGGTGATTATGCTCTAGTTAGCAAGTGT
TTCGGATGGAGCTCAAAACAAAGGATATCCTAATATTGTTTTTAACAGTG
CTGGGACGGCGAACTGAGCAACCGTTTATGAAGTGGTTCAGGGTATACGC
TGTATAGCGGAACTCTGAGCACACCGAATCGACACCTGAAGATTCTTTAT
TGCGGCAAAAAATCATCTACGTAATATTACTGCCAATGCAAACGTATTTT
TGAGCGAAAGAGCATTACTGCCCCCTTCCCTGTTCAGCTTACCACGAGCG
AAAGGAAACCATCTCCTCTTTCACCAGCTCGGTTGAAATTTCGTGTTCCG
ATATGAAAAATTCTTGCTGCTTACGAGGTGACCATAGTCGCTACCGACCT
CACCGCATCCGCCTTTGTAGCAGCGGATGTATAAAACCAACCAACCAAAT
CCTTTTATGACTCATCACGGCCAAAGTCATCGTCGCAACCATACCAGCGT
TAAACGTCATTCCTCGTTTGCACTTACACTTACTGGATGTCGGTGCGATT
GGTCCTTTTCTTTCGTCATTACTCCCTGTCTACGTTCGAGTCTGAGGTTT
TTTGTCTGTCTTAACGATTTAGACC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6299:7725..8899-

>mRNA_H-elongata_contig6299.13877.1 ID=mRNA_H-elongata_contig6299.13877.1|Name=mRNA_H-elongata_contig6299.13877.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig6299:7725..8899- (Himanthalia elongata Himel1 dioecious)
ATGAAAATCGATATCGCGAATCTCACGATCCCCGTCGAAGATGACTCGTA
CTTCGCACGTAATGAGTCGGCAAAGAAGACTGATGAGGATAACTTTTTCG
CCCAGGCATCGAAGATGAAAATCGATATCGCGAATCTCACGATCCCCGTC
GAAGATGACTCGTACTTCGCACGTAATGAGTCGGCAAAGAAGACTGATGA
GGATAACTTTTTCGCCCAGGCATCGAAGGGCGCCATTGTTTCCGAGAAGC
GCAAGGCTGACCAAAAGATCGTGGACTCCGAACTCATGACCAAGGTGTCT
GCCCAGCCTCTCCTGAAGGAGTTTCTATGTGCAATGTTTTCCCTGAAGAA
GGGAGACCGCCCGCACGAAATGCTTTTCTAGGGCGCCATTGTTTCCGAGA
AGCGCAAGGCTGACCAAAAGATCGTGGACTCCGAACTCATGACCAAGGTG
TCTGCCCAGCCTCTCCTGAAGGAGTTTCTATGTGCAATGTTTTCCCTGAA
GAAGGGAGACCGCCCGCACGAAATGCTTTTCTAG
back to top