mRNA_H-elongata_contig11791.1388.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11791.1388.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE) HSP 1 Score: 223 bits (569), Expect = 9.440e-68 Identity = 112/227 (49.34%), Postives = 139/227 (61.23%), Query Frame = 1
Query: 1 LFWALGDAGPQEDPDNHGQSTNVLFGSMVRIYVPSEGTGYEVPSDNYQGSELPEICAIGFRNIWRCGFDRLTDELYCGDVGQVNIESIYNVECGNNYGWMRFEGSRFFAAL---------------GVTHPCTAAIRDDFSYI---------------------VLGGYVYRGQAYADLIYGAYVFADHTARNIWYILQDDDGTWTSGTIISDSSVGVYSFFEDVNV 573
L+W GD GPQ D +NH Q T + G+M+RI VPS+G+GY +PS NY G L EICAIGFRN WRC FDR TD+LYCGDVG +E I VECGNNYGW RFEGSR A+ G T P D+S + V+GGYVYRG ++DL+YG Y+F D T +NI+Y++++ DG W+ GTIISD+SV + SF EDVNV
Sbjct: 256 LYWTTGDGGPQTDYNNHAQDTQSMLGAMMRITVPSDGSGYTIPSGNYGGGALDEICAIGFRNPWRCSFDRETDDLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVENNEYNPPCDGVDRSGFTFPLYEYCHPDYSSVGDDEFTAGVDICGDRVLLGNAVIGGYVYRGNFFSDLLYGHYIFGDSTMKNIFYLVKEGDG-WSLGTIISDASVQIISFAEDVNV 481
BLAST of mRNA_H-elongata_contig11791.1388.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI) HSP 1 Score: 221 bits (562), Expect = 4.980e-65 Identity = 113/226 (50.00%), Postives = 135/226 (59.73%), Query Frame = 1
Query: 1 LFWALGDAGPQEDPDNHGQSTNVLFGSMVRIYVPSEGTGYEVPSDNYQGSELPEICAIGFRNIWRCGFDRLTDELYCGDVGQVNIESIYNVECGNNYGWMRFEGSRFFAALGVTH-PCTAAIRDDFSY-----------------------------------IVLGGYVYRGQAYADLIYGAYVFADHTARNIWYILQDDDGTWTSGTIISDSSVGVYSFFEDVN 570
++W GD Q DP+NHGQ T L GS++RI VP++GTGYE+P+ N LPEICA GFRN WRC FDR TDELYCGDVG +E I VECGNNYGW RFEGSR A PC R F++ V+GGYVYRG +AD++YGAYVF D+T+ NI+YI+QD+ G W+ GTIISDSSV V F ED N
Sbjct: 256 IYWTTGDGASQTDPENHGQDTTNLLGSVMRISVPADGTGYEIPTGNLASPALPEICASGFRNPWRCSFDRETDELYCGDVGHTLVEEIDIVECGNNYGWSRFEGSRCQEAQESRDGPCLDTDRSAFTFPIYEYCHPDYSSDDADEADFVAGVDICGTRMVSGTAVIGGYVYRGTYFADVLYGAYVFGDNTSNNIYYIVQDN-GVWSVGTIISDSSVSVIGFAEDNN 480
BLAST of mRNA_H-elongata_contig11791.1388.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI) HSP 1 Score: 220 bits (560), Expect = 1.210e-64 Identity = 111/226 (49.12%), Postives = 136/226 (60.18%), Query Frame = 1
Query: 1 LFWALGDAGPQEDPDNHGQSTNVLFGSMVRIYVPSEGTGYEVPSDNYQGSELPEICAIGFRNIWRCGFDRLTDELYCGDVGQVNIESIYNVECGNNYGWMRFEGSRFFAAL---------------GVT-------HPCTAAIRDD--------------FSYIVLGGYVYRGQAYADLIYGAYVFADHTARNIWYILQDDDGTWTSGTIISDSSVGVYSFFEDVN 570
L+W GD GPQ DP+NH Q T + G+M+RI VPS+G GY +PS NY G L EICAIGFRN WRC FDR D LYCGDVG +E I VECGNNYGW RFEGSR A+ G T HP + DD V+GGYVYRG ++DL+ GAY+F D T +NI+Y++++D G W+ GTIISD+SV + SF ED+N
Sbjct: 319 LYWTTGDGGPQTDPENHSQDTQTMLGAMMRITVPSDGDGYTIPSGNYGGGALDEICAIGFRNPWRCSFDRENDNLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVEDNEFNPACDGISRSGFTFPLYEYCHPDYQSTGDDEFTAGNDICGDRVLLGNAVIGGYVYRGNYFSDLLNGAYIFGDSTMKNIYYLVEEDGG-WSLGTIISDASVQIISFSEDIN 543
BLAST of mRNA_H-elongata_contig11791.1388.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE) HSP 1 Score: 196 bits (497), Expect = 2.820e-57 Identity = 101/216 (46.76%), Postives = 124/216 (57.41%), Query Frame = 1
Query: 37 DPDNHGQSTNVLFGSMVRIYVPSEGTGYEVPSDNYQGSELPEICAIGFRNIWRCGFDRLTDELYCGDVGQVNIESIYNVECGNNYGWMRFEGSRFFAALGVTH---PCTAAIRDDFSY-----------------------------------IVLGGYVYRGQAYADLIYGAYVFADHTARNIWYILQDDDGTWTSGTIISDSSVGVYSFFEDVN 570
DP NH Q + G+M+RI VPS+GTGY +P NY G++ E+CAIG RN WRCGFDRL D LYCGDVG +E I +ECGNNYGW RFEGSR A+ PC R F+Y V+GGYVYRG ++DL+ GAY+F D T RNI Y L++++ W GTIISD+SV + SF EDVN
Sbjct: 209 DPGNHSQDETTMLGAMMRISVPSDGTGYTIPPGNYPGAKA-EVCAIGLRNPWRCGFDRLNDNLYCGDVGHTLVEEINLIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTYPLFEYCHPDYDSTDADEQEFTGGADTCGDRFVVGNCVIGGYVYRGNFFSDLLDGAYIFGDSTMRNI-YFLREEEAGWAVGTIISDASVQIVSFAEDVN 422
BLAST of mRNA_H-elongata_contig11791.1388.1 vs. uniprot
Match: D7G962_ECTSI (GSDH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G962_ECTSI) HSP 1 Score: 161 bits (408), Expect = 2.150e-44 Identity = 73/130 (56.15%), Postives = 87/130 (66.92%), Query Frame = 1
Query: 1 LFWALGDAGPQEDPDNHGQSTNVLFGSMVRIYVPSEGTGYEVPSDNYQGSELPEICAIGFRNIWRCGFDRLTDELYCGDVGQVNIESIYNVECGNNYGWMRFEGSRFFAALGVTH---PCTAAIRDDFSY 381
L+W GD GPQ DP NH Q + G+M+RI VP++GTGY +P NY GS+ EICAIG RN WRC FDRL D+LYCGDVGQ++ E I VECGNNYGW RFEGSR A+ PC R F++
Sbjct: 247 LYWTTGDGGPQTDPFNHSQDETTMLGAMMRISVPADGTGYTIPPGNYHGSKA-EICAIGLRNPWRCSFDRLNDDLYCGDVGQISAEEINLVECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTF 375
BLAST of mRNA_H-elongata_contig11791.1388.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI) HSP 1 Score: 166 bits (420), Expect = 4.540e-44 Identity = 88/211 (41.71%), Postives = 117/211 (55.45%), Query Frame = 1
Query: 1 LFWALGDAGPQEDPDNHGQSTNVLFGSMVRIYVPSE--GTGYEVPSDN-YQGS--ELPEICAIGFRNIWRCGFDRLTDELYCGDVGQVNIESIYNVECGNNYGWMRFEGSRF---------------------FAALGVTHPCTAAIRDDFSYI---------VLGGYVYRGQAYADLIYGAYVFADHTARNIWYILQDDDGTWTSGTIIS 528
++W +GD GPQ DPDN Q L GS+VRI VPS GTGYE+P+ N + G+ E PEICA G RN RC FD TDELYCGDVGQ +E + +ECG +YGW FEGSR F H + +++F V+GG+VYRG Y D++ G Y+FADH+ ++ ++ G WT+GT++S
Sbjct: 324 IYWTVGDGGPQNDPDNKAQDMTNLHGSIVRISVPSTAMGTGYEIPAGNPFDGANGEKPEICAWGLRNPHRCAFDTATDELYCGDVGQDRVEEVNVIECGKDYGWRMFEGSRCNDGFEGYDGGECSGLDRADYAFPVFEYCHVDYDSSQEEFDACGDRTVTGLSVIGGHVYRGAKYDDILGGHYIFADHSVGSLHHLAPAAGGGWTAGTVLS 534
BLAST of mRNA_H-elongata_contig11791.1388.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI) HSP 1 Score: 160 bits (405), Expect = 4.540e-42 Identity = 82/175 (46.86%), Postives = 103/175 (58.86%), Query Frame = 1
Query: 160 EICAIGFRNIWRCGFDRLTDELYCGDVGQVNIESIYNVECGNNYGWMRFEGSRFFAALGVTH---PCTAAIRDDFSY-----------------------------------IVLGGYVYRGQAYADLIYGAYVFADHTARNIWYILQDDDGTWTSGTIISDSSVGVYSFFEDVN 570
EICAIG RN WRC FDRL D+LYCGDVGQ+++E I +ECGNNYGW RFEGSR A+ PC R DF+Y V+GGYVYRG ++DL+ GAY+F D T RNI+++ +++DG W GTI+SD+SV + SF EDVN
Sbjct: 290 EICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSDFTYPLFEYCHPDFDSTDADEQEFTGGADTCGNRFVVGNCVIGGYVYRGNFFSDLLDGAYIFGDSTMRNIYFLKEEEDG-WAVGTIVSDASVQIISFAEDVN 463
BLAST of mRNA_H-elongata_contig11791.1388.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI) HSP 1 Score: 155 bits (393), Expect = 2.570e-41 Identity = 85/193 (44.04%), Postives = 107/193 (55.44%), Query Frame = 1
Query: 1 LFWALGDAGPQEDPDNHGQSTNVLFGSMVRIYVPSEGTGYEVPSDNYQGSELPEICAIGFRNIWRCGFDRLTDELYCGDVGQVNIESIYNVECGNNYGWMRFEGSRFFAALGVTH---PCTAAIRDDFSYIVLGGYVYRGQAYADLIYGAYVFADHTARNIWYILQDDDGTWTSGTIISDSSVGVYSFFEDVN 570
L+W GD GPQ DP NH Q +GTGY +P NY G++ EICAIG RN WRC FDRL D+LYCGDVGQ+++E I +ECGNNYGW RFEGSR A+ PC R F++ L Y + D + T N + ++ DDG W GTIISD+S+ + SF ED +
Sbjct: 174 LYWTTGDGGPQTDPFNHSQ----------------DGTGYTIPPGNYHGAKA-EICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGISRSGFTF-PLFEYCHPDFDSTDADEQKFTGGADTCGNRF--VEKDDGGWAVGTIISDASIQIISFAEDAD 346
BLAST of mRNA_H-elongata_contig11791.1388.1 vs. uniprot
Match: A0A497XUD8_9AQUI (Glucose/arabinose dehydrogenase n=1 Tax=Hydrogenivirga caldilitoris TaxID=246264 RepID=A0A497XUD8_9AQUI) HSP 1 Score: 137 bits (344), Expect = 1.480e-35 Identity = 82/196 (41.84%), Postives = 108/196 (55.10%), Query Frame = 1
Query: 1 LFWALGDAGPQEDPDNHGQSTNVLFGSMVRIYVPSEGTGYEVPSDN--YQGSELPEICAIGFRNIWRCGFDRLTDELYCGDVGQVNIESIYNVECGNNYGWMRFEGSRFFAALGV------THPCTAAIRDDFSYIVLGGYVYRGQAYADLIYGAYVFADHTARNIWYILQDDDGTWTSGTIISDSSVGVYSFFED 564
L+ A GD G DP NH Q+ L GS++RI V G Y VPSDN +GS PEI A G RN WR FDR+T EL+ GDVGQ E + V+ G NYGW +EG+ + G T P D + V+GGYVYRG+ +L YGAY+F D+ + IW + + G ++ D+S+ + SF ED
Sbjct: 151 LYVAFGDGGSAGDPYNHAQNVQTLLGSIIRIDV-DRGDPYSVPSDNPFAKGSGKPEIYAWGLRNPWRFSFDRITGELWVGDVGQDRWEEVNLVDKGKNYGWRCYEGNHPYNLEGCLSRDNYTFPVYEYPLRDGNCAVIGGYVYRGKKIKEL-YGAYLFGDYCSGRIWALFKM--GEEYKALLLLDASIRISSFAED 342
BLAST of mRNA_H-elongata_contig11791.1388.1 vs. uniprot
Match: D7FJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN8_ECTSI) HSP 1 Score: 141 bits (356), Expect = 1.850e-35 Identity = 79/191 (41.36%), Postives = 101/191 (52.88%), Query Frame = 1
Query: 1 LFWALGDAGPQEDPDNHGQSTNVLFGSMVRIYVPSE-GTGYEVPSDN--YQGSELPEICAIGFRNIWRCGFDRLTDELYCGDVGQVNIESIYNVECGNNYGWMRFEGSRFFAALGVTHPCTAAIRDDFSYIVLGGYVYRGQAYADLIYGAYVFADHTARNIWYILQDDDGTWTSGTIISDSSVGVYSFFED 564
LFWA+GD+GPQ D + GQ N+L GS++RI V SE +GY +PS N G EICA G RN +RC FDRL D+LYCGDVG +++ESI +ECGNNYGW +FEG R C I D F + L + F + ++++ G W SGTI D V ED
Sbjct: 309 LFWAMGDSGPQLDTFDRGQDPNILHGSIIRIGVSSEMESGYSIPSGNPFSGGGGRGEICAQGMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDR----------CMQQIEDQFP-----------ETCEFLDRSPFTFPEFN--RLYHLFPTTGGGWGSGTIKGDDFFAVSHIAED 476 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11791.1388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11791.1388.1 >prot_H-elongata_contig11791.1388.1 ID=prot_H-elongata_contig11791.1388.1|Name=mRNA_H-elongata_contig11791.1388.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp LFWALGDAGPQEDPDNHGQSTNVLFGSMVRIYVPSEGTGYEVPSDNYQGSback to top mRNA from alignment at H-elongata_contig11791:2897..4484- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11791.1388.1 ID=mRNA_H-elongata_contig11791.1388.1|Name=mRNA_H-elongata_contig11791.1388.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1588bp|location=Sequence derived from alignment at H-elongata_contig11791:2897..4484- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11791:2897..4484- >mRNA_H-elongata_contig11791.1388.1 ID=mRNA_H-elongata_contig11791.1388.1|Name=mRNA_H-elongata_contig11791.1388.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig11791:2897..4484- (Himanthalia elongata Himel1 dioecious)back to top |