mRNA_H-elongata_contig62827.13858.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62827.13858.1
Unique NamemRNA_H-elongata_contig62827.13858.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62827.13858.1 vs. uniprot
Match: D7G017_ECTSI (Tub domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G017_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 3.700e-69
Identity = 104/140 (74.29%), Postives = 122/140 (87.14%), Query Frame = 1 
Query:    1 QNKPTFRPSSPLKSLTSMWRGAFDSETEVERRERMHYATLNTEGSDVITFETLKPSWNEVIHAWTLNFNGRVKIPSKKNFLVSPEKGNHAMEQDFGEGKVHLRHGKMSKSRFSVDFRHPISPIIALGICCSTFAAKVAVT 420
            ++KP FRPSSPLK+  ++++    S+   E+R + HYATL +EGSD+ITFETL PSWNEV+HAWTLNFNGRVKIPSKKNFLVSPEKGN  MEQDFGEGKVH+RHGKMSKSRFSVDFRHP+SPI+ALG+CCSTFA K+ VT
Sbjct:  414 RHKPAFRPSSPLKTFRNIFKNFESSDDPEEQRAQQHYATLGSEGSDIITFETLSPSWNEVLHAWTLNFNGRVKIPSKKNFLVSPEKGNLVMEQDFGEGKVHIRHGKMSKSRFSVDFRHPVSPIVALGVCCSTFANKMVVT 553
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BLAST of mRNA_H-elongata_contig62827.13858.1 vs. uniprot
Match: A0A836CGA0_9STRA (Tubby C-terminal-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA0_9STRA)

HSP 1 Score: 148 bits (374), Expect = 6.410e-40
Identity = 66/96 (68.75%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:  133 SDVITFETLKPSWNEVIHAWTLNFNGRVKIPSKKNFLVSPEKGNHAMEQDFGEGKVHLRHGKMSKSRFSVDFRHPISPIIALGICCSTFAAKVAVT 420
            SD++  ET +PSWN  + AW LNFNGRV+IPSKKNFL +PE+GN AME +FG+G V LRHGKMSK+RFSVDFRHP+ PI+AL +CCSTFA K  VT
Sbjct:  378 SDIMVLETKRPSWNPALEAWVLNFNGRVRIPSKKNFLGAPERGNLAMETEFGDGAVLLRHGKMSKARFSVDFRHPLPPIVALAVCCSTFAQKRVVT 473
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BLAST of mRNA_H-elongata_contig62827.13858.1 vs. uniprot
Match: A0A6V1UG96_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UG96_HETAK)

HSP 1 Score: 136 bits (342), Expect = 1.340e-35
Identity = 66/117 (56.41%), Postives = 83/117 (70.94%), Query Frame = 1 
Query:   70 DSETEVERRERMHYATLNTEGSDVITFETLKPSWNEVIHAWTLNFNGRVKIPSKKNFLVSPEKGNHAMEQDFGEGKVHLRHGKMSKSRFSVDFRHPISPIIALGICCSTFAAKVAVT 420
            +S  E++   R + A       D++ FET +P WNE I AWTLNFNGRVKIPSKKNF +  E  NH ME +FGE  V+LR GKM+KSRFS+DFRHP+SP++AL I  S+FA K+ VT
Sbjct:  308 ESNEEIQDFNREYTAVEQDNQQDLMIFETKRPVWNEQIQAWTLNFNGRVKIPSKKNFFIQAELDNHIMESEFGED-VYLRFGKMTKSRFSLDFRHPLSPVVALAIAASSFADKMLVT 423
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BLAST of mRNA_H-elongata_contig62827.13858.1 vs. uniprot
Match: K3X577_GLOUD (PDZ domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X577_GLOUD)

HSP 1 Score: 130 bits (328), Expect = 1.440e-32
Identity = 57/95 (60.00%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:  136 DVITFETLKPSWNEVIHAWTLNFNGRVKIPSKKNFLVSPEKGNHAMEQDFGEGKVHLRHGKMSKSRFSVDFRHPISPIIALGICCSTFAAKVAVT 420
            D++TFET KP+WN+ + AWTLNF+GRVK+ SKKNFL+ PE+GN  ME +F + +V+LR GK+SK+RFS+D++ PISP++A+ I CS+FA K+AVT
Sbjct:  665 DLLTFETKKPAWNDELGAWTLNFHGRVKLASKKNFLLVPEQGNEQMETEFADERVYLRFGKVSKTRFSLDYQAPISPLLAVAIVCSSFAHKIAVT 759
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BLAST of mRNA_H-elongata_contig62827.13858.1 vs. uniprot
Match: A0A8K1C842_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C842_PYTOL)

HSP 1 Score: 130 bits (327), Expect = 1.500e-32
Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:  136 DVITFETLKPSWNEVIHAWTLNFNGRVKIPSKKNFLVSPEKGNHAMEQDFGEGKVHLRHGKMSKSRFSVDFRHPISPIIALGICCSTFAAKVAVT 420
            D++ FET KPSWNE + AWTLNFNGRVK+PSKKNFL+  E+GN  ME +FGE   +LR GK+SK+RFS+DF+ PI+P IAL I  S FA K+AVT
Sbjct:  549 DLLVFETRKPSWNEELGAWTLNFNGRVKLPSKKNFLIVAEEGNENMEAEFGEQTSYLRFGKVSKTRFSLDFQAPITPFIALAIATSAFARKMAVT 643
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BLAST of mRNA_H-elongata_contig62827.13858.1 vs. uniprot
Match: A0A7S1TR98_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TR98_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.230e-31
Identity = 59/104 (56.73%), Postives = 78/104 (75.00%), Query Frame = 1 
Query:  109 YATLNTEG-SDVITFETLKPSWNEVIHAWTLNFNGRVKIPSKKNFLVSPEKGNHAMEQDFGEGKVHLRHGKMSKSRFSVDFRHPISPIIALGICCSTFAAKVAV 417
            Y TL  +   D++  ET +P+W+E + AWTLNF GRVK  SKKNFL++PEKGN   E + GEG+V+LR GK++K RFS+DFR P+SPI+ALG+ CSTF+ K  V
Sbjct:  603 YGTLEQKDVDDLLVLETKRPAWSEELKAWTLNFEGRVKRASKKNFLIAPEKGNVHSEHELGEGQVYLRFGKVTKKRFSLDFRAPMSPIVALGVACSTFSDKKVV 706
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BLAST of mRNA_H-elongata_contig62827.13858.1 vs. uniprot
Match: A0A5D6XV38_9STRA (PDZ domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV38_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.330e-30
Identity = 55/95 (57.89%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:  136 DVITFETLKPSWNEVIHAWTLNFNGRVKIPSKKNFLVSPEKGNHAMEQDFGEGKVHLRHGKMSKSRFSVDFRHPISPIIALGICCSTFAAKVAVT 420
            D++TFET KP+WN+ + AWTLNF+GRVK+ SKKNFL+ PE+G+  ME +F + +V LR GK++KSRFS+D++ PI P++AL I C++FA K+AVT
Sbjct:  653 DLLTFETKKPAWNDELGAWTLNFHGRVKLASKKNFLLVPEQGSAHMEAEFPDERVFLRFGKVAKSRFSLDYQAPICPMLALAIVCTSFAHKIAVT 747
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BLAST of mRNA_H-elongata_contig62827.13858.1 vs. uniprot
Match: A0A2R5GUZ5_9STRA (Tubby protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUZ5_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.840e-28
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = 1 
Query:   82 EVERRERMHYATLNTEG-SDVITFETLKPSWNEVIHAWTLNFNGRVKIPSKKNFLVSPEKGNHAMEQDFGEGKVHLRHGKMSKSRFSVDFRHPISPIIALGICCSTFAAKVAVT 420
            +++ R+   Y  + +E  S+++ F+TLKP WNE + AWTLNFN RVK+ SKKNF++ P+  N  ME++FG   V LR GK+ K RFS+DFRHPISP  A+ I  S F +K  VT
Sbjct:  560 KLQARKGDEYRAVESEELSELLEFDTLKPQWNEELQAWTLNFNSRVKMASKKNFMLVPQAQNETMEEEFGADTVCLRFGKVLKDRFSLDFRHPISPFQAMAIAVSAFTSKRLVT 673
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BLAST of mRNA_H-elongata_contig62827.13858.1 vs. uniprot
Match: A0A1V9ZUF0_9STRA (ATP-binding Cassette (ABC) superfamily n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUF0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 7.920e-25
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:  103 MHYATLNTEGSDVITF-ETLKPSWNEVIHAWTLNFNGRVKIPSKKNFLVSPEKGNHAMEQDFGEGKVHLRHGKMSKSRFSVDFRHPISPIIALGICCSTFAAKVAVT 420
            + Y  +  E  D + F  + KPSWNE IHAWTLNF+GRVK PSKKN L+     + AME +FG+  + LR GK+SK+RF++DF  P+SP +AL +  S FA K  VT
Sbjct:  342 VQYGAVEQEDHDDLIFLASKKPSWNEEIHAWTLNFDGRVKAPSKKNLLLGASDAHAAMEAEFGDATL-LRFGKVSKARFTLDFGAPLSPFVALAVAASAFAHKRIVT 447
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BLAST of mRNA_H-elongata_contig62827.13858.1 vs. uniprot
Match: A0A662YJH7_9STRA (PDZ domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJH7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.470e-24
Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:  136 DVITFETLKPSWNEVIHAWTLNFNGRVKIPSKKNFL-VSPEKGNHAMEQDFGEGKVHLRHGKMSKSRFSVDFRHPISPIIALGICCSTFAAKVAVT 420
            D++TFET KPSWNE + AWTLNF GRVK+ SKKNFL VS +   +  EQ+       LR GK+SK+RF++D+  P++PI AL I CS FA K+AVT
Sbjct:  637 DLLTFETKKPSWNETLSAWTLNFQGRVKVASKKNFLLVSADSDENGEEQE----TTVLRFGKVSKTRFTLDYAAPLAPIQALAIACSAFANKIAVT 728
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62827.13858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G017_ECTSI3.700e-6974.29Tub domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CGA0_9STRA6.410e-4068.75Tubby C-terminal-like domain-containing protein (F... [more]
A0A6V1UG96_HETAK1.340e-3556.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K3X577_GLOUD1.440e-3260.00PDZ domain-containing protein n=1 Tax=Globisporang... [more]
A0A8K1C842_PYTOL1.500e-3264.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1TR98_9STRA2.230e-3156.73Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A5D6XV38_9STRA5.330e-3057.89PDZ domain-containing protein n=1 Tax=Pythium bras... [more]
A0A2R5GUZ5_9STRA2.840e-2850.00Tubby protein-like n=1 Tax=Hondaea fermentalgiana ... [more]
A0A1V9ZUF0_9STRA7.920e-2550.47ATP-binding Cassette (ABC) superfamily n=1 Tax=Ach... [more]
A0A662YJH7_9STRA2.470e-2456.25PDZ domain-containing protein n=2 Tax=Nothophytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62827contigH-elongata_contig62827:364..2250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.6
Seed ortholog evalue9.3e-58
Seed eggNOG ortholog2880.D7G017
KEGG koko:K19600
EggNOG free text desc.phosphatidylinositol binding
EggNOG OGsKOG2502@1,KOG2502@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons3
Model size423
Cds size423
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62827.13858.1prot_H-elongata_contig62827.13858.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62827 364..2250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931011.5254524-CDS-H-elongata_contig62827:363..4891622931011.5254524-CDS-H-elongata_contig62827:363..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62827 364..489 +
1691679661.5443583-CDS-H-elongata_contig62827:363..4891691679661.5443583-CDS-H-elongata_contig62827:363..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62827 364..489 +
1622931011.544543-CDS-H-elongata_contig62827:1214..13461622931011.544543-CDS-H-elongata_contig62827:1214..1346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62827 1215..1346 +
1691679661.5562797-CDS-H-elongata_contig62827:1214..13461691679661.5562797-CDS-H-elongata_contig62827:1214..1346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62827 1215..1346 +
1622931011.559981-CDS-H-elongata_contig62827:2085..22501622931011.559981-CDS-H-elongata_contig62827:2085..2250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62827 2086..2250 +
1691679661.5665503-CDS-H-elongata_contig62827:2085..22501691679661.5665503-CDS-H-elongata_contig62827:2085..2250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62827 2086..2250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62827.13858.1

>prot_H-elongata_contig62827.13858.1 ID=prot_H-elongata_contig62827.13858.1|Name=mRNA_H-elongata_contig62827.13858.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
QNKPTFRPSSPLKSLTSMWRGAFDSETEVERRERMHYATLNTEGSDVITF
ETLKPSWNEVIHAWTLNFNGRVKIPSKKNFLVSPEKGNHAMEQDFGEGKV
HLRHGKMSKSRFSVDFRHPISPIIALGICCSTFAAKVAVT*
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mRNA from alignment at H-elongata_contig62827:364..2250+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62827.13858.1 ID=mRNA_H-elongata_contig62827.13858.1|Name=mRNA_H-elongata_contig62827.13858.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1887bp|location=Sequence derived from alignment at H-elongata_contig62827:364..2250+ (Himanthalia elongata Himel1 dioecious)
CAGAACAAGCCCACGTTCCGACCGTCGTCTCCGCTTAAGTCTCTGACCAG
CATGTGGCGGGGCGCCTTCGACAGCGAGACGGAGGTTGAGCGAAGGGAAC
GCATGCACTACGCCACGCTAAACACGGTGGGCCTTACTATCCATACCATC
CACAGTAAATTTATCGGTTGACGAGAGTTGAACCCCTTGAGAGACACGTG
TCAAGGACACGTCCCTACACTAAAACTAGTATATTTTCGAAAAAGACGCC
TTGACGCACTGTCAAGAACCTGTCAAACAACAACACTATGATCCTCCGCA
GTATTGGTAGGCTTGATACCGTGTTCCAATTTAGCTGTTGGCTGCTGCCC
TAATAGAGAGCTACGTCGTCAGTTGTCAGGCATTTATTTATTTATTTATT
TTATCTATTAATTCTCACATAAGCTGATGCCAAAATCTAGACCATGGTCG
CAAGGTAGAAAAACCACCACCCGGAAGGGAAAAACGTTCAACGTACTCTT
CTATAAAAAATGAAACGGCAAATGGTGCATAATACAAATACTAGAAAAAA
AGTGACCTCTCCAAAGAAAAAGAAAGAAACAAAAAAAAAGAACACATACA
GTTGTTAACAAACTGCATGTGGCTGTCGGGACGCGCGTCTATCGGAGAAC
GATTGAGCGAAGAGCCACGTATGGGATACATTTTATTTATCTTGTTTTTG
TCCCCCCCTTTATACCACGGTATTGTTTATGGTAAGCTCTACCGTTTTTG
TACCATATCCCGAGACTAGCTTCGTGCTATATTTTTGCCCCGACCCCTCT
TCCTACTTCAATTAAAACAAACCATAGAAATTTTTTTCACTGGCTGAGCA
GGAGGGCAGCGACGTCATCACGTTTGAGACTCTAAAGCCGTCTTGGAACG
AGGTTATCCACGCGTGGACGCTGAACTTCAACGGTCGAGTCAAGATCCCG
TCCAAAAAGAACTTTCTTGTGTCGCCCGAAAAGGTACGAAACAAAACAAC
ACGATAAGGTAGGACCACGGGGACGTTCGTTTGTCCCTCCTCCCCCCCTC
CCCGATATTTTCTCCATGACTCTATCGTTGATTGTTTTTTTTTGAAGGAT
TGATGATACGTGTCTTGTCAAATTACCGAAAAATATCTCCTTTAACGTGT
GATAATGGTTTAATGTGGTCATCACGTCCTGGGCATAAATAAACTGGATA
TGGCTGCAAATCCTGCTCGTAGTCAGCTAAAACAGGAAAAAGGAAATTCC
CTGTCCCCGTTCGCGCCTGAGAATTTGTGGTGGGCCCATCGGTCGTCCCG
TACGAGTCCCGTTCTTGTGGTGGGCCCATGTGTGGACTCGGGCTTAACTA
AACTCAACTCAAATGTCCGGGTTGTCGTTTGCCTAAAGTACTCTTCTTGC
TCAGTCTTTCTAGATACGAATGCAAATCATTTCACCTGTACAAGTATACA
CCTTTTTTGTAGAGTAGGAAGCGACTGGCTCGGAGCTCGGCGATACGGTA
CAAGGTACTTCCCCGCTGCACGCGGCACGTTATATGCTTCACGTAGGCCC
TGGTAAGGGGGAGGTGATGGGCACCGAAATTCGACCGCTTTAGGCAGATA
GGCTTCGATCCTTCTCCGACTTGTTGTTGGTCACACATATGGTCTTTGGT
CTATCTCGTGTACAACTGTACTGTGTACTCTCTTCTGTACTATTGCCATC
TGTGAACATCTCGTCCACGCAGGGTAATCATGCGATGGAGCAAGATTTCG
GAGAGGGCAAGGTACACCTCCGACACGGTAAGATGAGCAAGAGCCGCTTC
TCGGTCGACTTCAGGCACCCTATCAGCCCCATCATTGCGCTAGGCATCTG
CTGCAGCACGTTTGCCGCAAAGGTAGCCGTCACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig62827:364..2250+

>mRNA_H-elongata_contig62827.13858.1 ID=mRNA_H-elongata_contig62827.13858.1|Name=mRNA_H-elongata_contig62827.13858.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig62827:364..2250+ (Himanthalia elongata Himel1 dioecious)
CAGAACAAGCCCACGTTCCGACCGTCGTCTCCGCTTAAGTCTCTGACCAG
CATGTGGCGGGGCGCCTTCGACAGCGAGACGGAGGTTGAGCGAAGGGAAC
GCATGCACTACGCCACGCTAAACACGCAGAACAAGCCCACGTTCCGACCG
TCGTCTCCGCTTAAGTCTCTGACCAGCATGTGGCGGGGCGCCTTCGACAG
CGAGACGGAGGTTGAGCGAAGGGAACGCATGCACTACGCCACGCTAAACA
CGGAGGGCAGCGACGTCATCACGTTTGAGACTCTAAAGCCGTCTTGGAAC
GAGGTTATCCACGCGTGGACGCTGAACTTCAACGGTCGAGTCAAGATCCC
GTCCAAAAAGAACTTTCTTGTGTCGCCCGAAAAGGAGGGCAGCGACGTCA
TCACGTTTGAGACTCTAAAGCCGTCTTGGAACGAGGTTATCCACGCGTGG
ACGCTGAACTTCAACGGTCGAGTCAAGATCCCGTCCAAAAAGAACTTTCT
TGTGTCGCCCGAAAAGGGTAATCATGCGATGGAGCAAGATTTCGGAGAGG
GCAAGGTACACCTCCGACACGGTAAGATGAGCAAGAGCCGCTTCTCGGTC
GACTTCAGGCACCCTATCAGCCCCATCATTGCGCTAGGCATCTGCTGCAG
CACGTTTGCCGCAAAGGTAGCCGTCACGTGAGGTAATCATGCGATGGAGC
AAGATTTCGGAGAGGGCAAGGTACACCTCCGACACGGTAAGATGAGCAAG
AGCCGCTTCTCGGTCGACTTCAGGCACCCTATCAGCCCCATCATTGCGCT
AGGCATCTGCTGCAGCACGTTTGCCGCAAAGGTAGCCGTCACGTGA
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