mRNA_H-elongata_contig62595.13832.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62595.13832.1
Unique NamemRNA_H-elongata_contig62595.13832.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62595.13832.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 9.070e-11
Identity = 64/191 (33.51%), Postives = 90/191 (47.12%), Query Frame = 1 
Query:    7 VQLANGQKVVVRNQTRTLQVAIGTPWGSVVIST-AFAIIPGTDSVLILGSKTLREKLGVDVMRSLKGKA--------QGGD-------------------ESSGDMPEDVGSH--AWEPAMFKEVGDEVITRREALMAAVDAALEAGLPSDAETRLRDLLLGPLFDGFHRLLSGDPPARVEPFQVNLKVDA 489
            V+   G+ V V  +T  +++ I T WG VV+   AFA++PGTD V+I+G  TL  KLG+DV  ++   A        +G D                    ++ D P+       A  P M     +E   R +AL  AVD+A +AGL      RLR ++    F+ F R + GDPPA V P  V LK  A
Sbjct:  468 VKTVEGRLVTVTEKTCPVRMTIHTQWGPVVLDPRAFAVMPGTDDVVIIGDPTLT-KLGIDVYEAMAQHALKERDMEVRGVDTPGFHEARRISVSVEAFTQRAAPDPPDAAVERLVARGPDMVMTPAEEEAGRADALDRAVDSAADAGLSPWGLDRLRQVV-DRRFNVFRRGVRGDPPANVPPMTVKLKTGA 656
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62595.13832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7F6_9PHAE9.070e-1133.51Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62595contigH-elongata_contig62595:2417..3025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size501
Cds size501
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.642784-CDS-H-elongata_contig62595:2416..26551622931008.642784-CDS-H-elongata_contig62595:2416..2655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62595 2417..2655 -
1691679660.4130132-CDS-H-elongata_contig62595:2416..26551691679660.4130132-CDS-H-elongata_contig62595:2416..2655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62595 2417..2655 -
1622931008.6706743-CDS-H-elongata_contig62595:2763..30251622931008.6706743-CDS-H-elongata_contig62595:2763..3025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62595 2764..3025 -
1691679660.4218042-CDS-H-elongata_contig62595:2763..30251691679660.4218042-CDS-H-elongata_contig62595:2763..3025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62595 2764..3025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62595.13832.1prot_H-elongata_contig62595.13832.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62595 2417..3025 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62595.13832.1

>prot_H-elongata_contig62595.13832.1 ID=prot_H-elongata_contig62595.13832.1|Name=mRNA_H-elongata_contig62595.13832.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
MSVQLANGQKVVVRNQTRTLQVAIGTPWGSVVISTAFAIIPGTDSVLILG
SKTLREKLGVDVMRSLKGKAQGGDESSGDMPEDVGSHAWEPAMFKEVGDE
VITRREALMAAVDAALEAGLPSDAETRLRDLLLGPLFDGFHRLLSGDPPA
RVEPFQVNLKVDADLSK
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mRNA from alignment at H-elongata_contig62595:2417..3025-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62595.13832.1 ID=mRNA_H-elongata_contig62595.13832.1|Name=mRNA_H-elongata_contig62595.13832.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=609bp|location=Sequence derived from alignment at H-elongata_contig62595:2417..3025- (Himanthalia elongata Himel1 dioecious)
ATGTCTGTTCAGCTGGCGAATGGACAGAAGGTTGTGGTGAGGAATCAAAC
ACGTACTCTGCAGGTGGCCATTGGAACTCCATGGGGTTCCGTGGTTATTT
CCACTGCTTTTGCAATCATTCCGGGCACTGACAGCGTGCTTATTCTTGGG
TCGAAGACGTTGCGCGAGAAGCTGGGAGTTGACGTCATGAGATCTTTAAA
GGGTAAAGCACAGGGTGGAGATGAATCGAGCGGGGACATGCCTGAAGATG
TTGGCTCCCATGGTGGGATGTCGTTGCGGCGTGTAGCCGTGACAATGAAA
GGCATGTAGGCTGCAGGCAAAGTGGCTGCTGCTATGGAACCGCGAGATGA
GTTTATTGAAGATGTGGTAGCGTGGGAACCGGCAATGTTCAAAGAGGTTG
GCGATGAAGTAATCACCCGCCGGGAAGCACTGATGGCGGCCGTAGATGCT
GCTCTGGAGGCTGGCTTGCCGTCTGACGCCGAGACTCGTTTACGTGATCT
CTTGCTTGGACCGCTGTTTGATGGTTTTCACCGATTATTGTCGGGGGATC
CACCGGCGAGAGTGGAACCTTTCCAAGTGAACCTGAAGGTGGATGCCGAT
TTGTCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig62595:2417..3025-

>mRNA_H-elongata_contig62595.13832.1 ID=mRNA_H-elongata_contig62595.13832.1|Name=mRNA_H-elongata_contig62595.13832.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig62595:2417..3025- (Himanthalia elongata Himel1 dioecious)
ATGTCTGTTCAGCTGGCGAATGGACAGAAGGTTGTGGTGAGGAATCAAAC
ACGTACTCTGCAGGTGGCCATTGGAACTCCATGGGGTTCCGTGGTTATTT
CCACTGCTTTTGCAATCATTCCGGGCACTGACAGCGTGCTTATTCTTGGG
TCGAAGACGTTGCGCGAGAAGCTGGGAGTTGACGTCATGAGATCTTTAAA
GGGTAAAGCACAGGGTGGAGATGAATCGAGCGGGGACATGCCTGAAGATG
TTGGCTCCCATGATGTCTGTTCAGCTGGCGAATGGACAGAAGGTTGTGGT
GAGGAATCAAACACGTACTCTGCAGGTGGCCATTGGAACTCCATGGGGTT
CCGTGGTTATTTCCACTGCTTTTGCAATCATTCCGGGCACTGACAGCGTG
CTTATTCTTGGGTCGAAGACGTTGCGCGAGAAGCTGGGAGTTGACGTCAT
GAGATCTTTAAAGGGTAAAGCACAGGGTGGAGATGAATCGAGCGGGGACA
TGCCTGAAGATGTTGGCTCCCATGCGTGGGAACCGGCAATGTTCAAAGAG
GTTGGCGATGAAGTAATCACCCGCCGGGAAGCACTGATGGCGGCCGTAGA
TGCTGCTCTGGAGGCTGGCTTGCCGTCTGACGCCGAGACTCGTTTACGTG
ATCTCTTGCTTGGACCGCTGTTTGATGGTTTTCACCGATTATTGTCGGGG
GATCCACCGGCGAGAGTGGAACCTTTCCAAGTGAACCTGAAGGTGGATGC
CGATTTGTCCAAGCGTGGGAACCGGCAATGTTCAAAGAGGTTGGCGATGA
AGTAATCACCCGCCGGGAAGCACTGATGGCGGCCGTAGATGCTGCTCTGG
AGGCTGGCTTGCCGTCTGACGCCGAGACTCGTTTACGTGATCTCTTGCTT
GGACCGCTGTTTGATGGTTTTCACCGATTATTGTCGGGGGATCCACCGGC
GAGAGTGGAACCTTTCCAAGTGAACCTGAAGGTGGATGCCGATTTGTCCA
AG
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