prot_H-elongata_contig62542.13825.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig62542.13825.1
Unique Nameprot_H-elongata_contig62542.13825.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length662
Homology
BLAST of mRNA_H-elongata_contig62542.13825.1 vs. uniprot
Match: D8LTA3_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA3_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 6.240e-43
Identity = 220/624 (35.26%), Postives = 289/624 (46.31%), Query Frame = 0
Query:   75 GGDSEXXXDDFAEAAAMLESSCLRSVCRQYMFGVDWRFISAHGLFYLALLKLLSDLLRPTVGPKGRRYRRGKARRRQQLSANDKNGERTDELLANFLLEPSADCRGLVELLESLCIGLDDLVAVPPDSAP--VLPPPAHLAHPPSPFLALAHNPPPSPASPTPPLIMTQQQSNFSS---KLTAVAHAGGVHNHQPYIFTHNHGSAPIISIIPPLAAPTLPSNXXXXXXXXXAVKAA--GQPELLPQVPLQTEIPISPGAPEWIPIPPPPPLPLSAKTAVVY----GPP--------------------------GVXXXXXXXXXXXXXXPAAPGGAAPPAKLAISPSEPGWTPIPPXXXXXQVLKPALXXXXXXXXXXXXXXXXXXXXIGGSQGSIMDIGLGTRADRSPWITAQQRESLEHEQGTALAELTRSVVEQAKAAAAAISAATACDDRIGEVLSRSATKTDGNGTRSCRGGAAKTESDRSVEGSGDGVVGTDKTTP-EAADEEPSEEAHYVEALAELRFDTMRMEAVSPGVDEIAPSDKGENIL-VRFRAGTRLSPRQRHHFWGAADAERSVPSARQRRLVRELRSLARELPLYWGSTIAVRVDEDRPHLLKASAKA 659
            G D++   D  A+A A L+ SCLRSVCRQY+FG DWRF+S H  FYLALL+LL ++LRP  GP G     G  RR+    A +    R+ + LA  LL PS DC G+V+LL+SLC+ LDDLVA PP   P   LP P  L  P +           SPA+         QQS   +      A A A G  +  P  +       P  +    + +  LP +          V  A    P+ +        +P+S   P             SA +A       GPP                            XXXXXXXXXXX   P  P      A +A SP+           XXX  L  A+XXXXX   XXX     XXXX        M +  G R +  P   + + E  EH+QG A+A+L RSV+  AK+A                    +  + DG+G+      A + E+D     + D     +   P E+ +  PSE+A Y+EA+ + +F TM+ME  +     +   +K ++   +           Q+HHFW  A+AE S   ARQRRLVRELRSLARELPLYWGSTIAVR+DE+RPHLLKA   A
Sbjct:  510 GVDADYDDDIAAQATATLDGSCLRSVCRQYLFGADWRFVSTHQQFYLALLRLLQEVLRPFNGP-GAGGDGGGCRRQAAGGAGE---PRSRQPLAQSLLRPSVDCPGMVDLLDSLCVALDDLVACPPQPPPPAALPAPTRLPQPSA-----------SPAAHGKSQETAVQQSVLDAHAFSAAAAAVAAGAPSLGPANYLVQAKYHPKYNKYFKMLSVGLPRSAALLRMSKDGVDQAILDAPDAM--------LPLSGAGPAXXXXXXXXXXSASALSAAAAVSPAGPPCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGTPGVPSDGQDGAPVASSPAAEXXX------XXXXXLPSAIXXXXXAAAXXXSLPLTXXXXXXXXXXXXMGLRGGRRRELPP-PKSYEEEKREHDQGVAMADLARSVLVLAKSAVXXXXXXXXXXXXX-XTAGAATVERDGDGSS-----ATRAEADPGGRAAEDLPASEEVVAPTESVEAVPSEKALYLEAIEQEQFATMQMEVAALPPPPVTVGEKADDAPGLAALXXXXXXXXQQHHFWKVAEAEGSAFPARQRRLVRELRSLARELPLYWGSTIAVRMDEERPHLLKAMIAA 1097          
BLAST of mRNA_H-elongata_contig62542.13825.1 vs. uniprot
Match: A0A6H5JLB4_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB4_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.290e-26
Identity = 80/161 (49.69%), Postives = 96/161 (59.63%), Query Frame = 0
Query:   86 AEAAAMLESSCLRSVCRQYMFGVDWRFISAHGLFYLALLKLLSDLLRP----TVGPKGRRYRRGKARRRQQLSANDKNGERTDELLANFLLEPSADCRGLVELLESLCIGLDDLVAVPPDSA-PVLPPPAHLAHPPSPFLALAHNPPPSPASPTPPLIMTQ 241
            A+A A L+ SCLRSVCRQY+FG DWRF+S H  FYLALL+LL ++LRP      G  G    RG+A       A      R+ + LA  LL PSADC G+V+LL+SLC+ LDDLVA PP    P    P  L  P +   A  H PPPSP SP   L +TQ
Sbjct:  587 AQATAALDGSCLRSVCRQYLFGADWRFVSTHQQFYLALLRLLREVLRPFNDARPGGDGGGDCRGQA-------AGGAGEPRSPQPLARSLLHPSADCPGMVDLLDSLCVALDDLVACPPQPPQPAALAPTRLPQPSASPAAAKHLPPPSPTSPLKLLFLTQ 740          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62542.13825.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTA3_ECTSI6.240e-4335.26UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JLB4_9PHAE1.290e-2649.69UBC core domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62542contigH-elongata_contig62542:921..3258 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62542.13825.1mRNA_H-elongata_contig62542.13825.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig62542 303..3300 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig62542.13825.1 ID=prot_H-elongata_contig62542.13825.1|Name=mRNA_H-elongata_contig62542.13825.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=662bp
MLEALGDDAGDDDPTTSTKDDVCKNGGGGCGLIEMHEEKDLGVQSSSAAE
DASTAASGAQGCDEGERLKWEENGGGDSEGGGDDFAEAAAMLESSCLRSV
CRQYMFGVDWRFISAHGLFYLALLKLLSDLLRPTVGPKGRRYRRGKARRR
QQLSANDKNGERTDELLANFLLEPSADCRGLVELLESLCIGLDDLVAVPP
DSAPVLPPPAHLAHPPSPFLALAHNPPPSPASPTPPLIMTQQQSNFSSKL
TAVAHAGGVHNHQPYIFTHNHGSAPIISIIPPLAAPTLPSNAPTIPAPTP
AVKAAGQPELLPQVPLQTEIPISPGAPEWIPIPPPPPLPLSAKTAVVYGP
PGVSAKAAMVYGFPGVSPAAPGGAAPPAKLAISPSEPGWTPIPPPPPLPQ
VLKPALPPPTTSPLTPGGGAAATGGGIGGSQGSIMDIGLGTRADRSPWIT
AQQRESLEHEQGTALAELTRSVVEQAKAAAAAISAATACDDRIGEVLSRS
ATKTDGNGTRSCRGGAAKTESDRSVEGSGDGVVGTDKTTPEAADEEPSEE
AHYVEALAELRFDTMRMEAVSPGVDEIAPSDKGENILVRFRAGTRLSPRQ
RHHFWGAADAERSVPSARQRRLVRELRSLARELPLYWGSTIAVRVDEDRP
HLLKASAKALG*
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