mRNA_H-elongata_contig117788.1383.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117788.1383.1
Unique NamemRNA_H-elongata_contig117788.1383.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig117788.1383.1 vs. uniprot
Match: A0A6H5KJY8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY8_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.900e-34
Identity = 64/67 (95.52%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 RVKQQAYIEIAEQSFSHLHTLSLQWHLKKKMGNVIRSMDRGTEAANNLITYLFLYLVPAIAECIATV 201
            RVKQQAYIEIAEQSF+HLHTLSLQWHLKKKMGNV+RSMDRGT+AANNLITYLFLYLVPAIAECIATV
Sbjct:    4 RVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATV 70
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BLAST of mRNA_H-elongata_contig117788.1383.1 vs. uniprot
Match: D8LQQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ6_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.160e-33
Identity = 63/67 (94.03%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 RVKQQAYIEIAEQSFSHLHTLSLQWHLKKKMGNVIRSMDRGTEAANNLITYLFLYLVPAIAECIATV 201
            +VKQQAYIEIAEQSF+HLHTLSLQWHLKKKMGNV+RSMDRGT+AANNLITYLFLYLVPAIAECIATV
Sbjct:  279 KVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATV 345
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BLAST of mRNA_H-elongata_contig117788.1383.1 vs. uniprot
Match: A0A835Z4N6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N6_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.590e-32
Identity = 60/67 (89.55%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 RVKQQAYIEIAEQSFSHLHTLSLQWHLKKKMGNVIRSMDRGTEAANNLITYLFLYLVPAIAECIATV 201
            +VKQQAYIEIAE +F+HLHTLSLQWHLKKKMGNVIRSMDRGTEAANNL+TYLFLYLVPAI EC+ATV
Sbjct:  168 KVKQQAYIEIAEHTFAHLHTLSLQWHLKKKMGNVIRSMDRGTEAANNLVTYLFLYLVPAIGECVATV 234
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BLAST of mRNA_H-elongata_contig117788.1383.1 vs. uniprot
Match: A0A7S2UVY2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVY2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.360e-29
Identity = 53/65 (81.54%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 RVKQQAYIEIAEQSFSHLHTLSLQWHLKKKMGNVIRSMDRGTEAANNLITYLFLYLVPAIAECIA 195
            +VKQ+AY+EIAE++F+HLH LSLQWHLKKKMGNVIRSMDRGTEAAN L+TYLFLYLVP++AEC+A
Sbjct:  141 KVKQEAYVEIAERTFAHLHNLSLQWHLKKKMGNVIRSMDRGTEAANTLVTYLFLYLVPSLAECLA 205
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BLAST of mRNA_H-elongata_contig117788.1383.1 vs. uniprot
Match: A0A7S3UX91_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX91_HETAK)

HSP 1 Score: 108 bits (270), Expect = 7.910e-26
Identity = 49/65 (75.38%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 RVKQQAYIEIAEQSFSHLHTLSLQWHLKKKMGNVIRSMDRGTEAANNLITYLFLYLVPAIAECIA 195
            +VKQ AYIEIA+++F+HLH LSLQWHLKK+MGNVIRSMDRG+EAAN L  YLFLYL+P++AEC+A
Sbjct:  193 KVKQAAYIEIAQRTFAHLHNLSLQWHLKKRMGNVIRSMDRGSEAANTLTNYLFLYLLPSLAECLA 257
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BLAST of mRNA_H-elongata_contig117788.1383.1 vs. uniprot
Match: A0A7S2SDW9_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SDW9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.470e-25
Identity = 46/63 (73.02%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    1 RVKQQAYIEIAEQSFSHLHTLSLQWHLKKKMGNVIRSMDRGTEAANNLITYLFLYLVPAIAEC 189
            +VKQ AY+EIAEQ+F+HLH+LSL+WH+KKKMGNV+RSMDRG +AA+ ++TYLFLYLVP++AEC
Sbjct:  310 KVKQTAYVEIAEQTFTHLHSLSLEWHVKKKMGNVLRSMDRGVQAADTVVTYLFLYLVPSVAEC 372
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BLAST of mRNA_H-elongata_contig117788.1383.1 vs. uniprot
Match: A0A2R5G0X4_9STRA (ABC transporter ATP-binding protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0X4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.470e-25
Identity = 45/64 (70.31%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 RVKQQAYIEIAEQSFSHLHTLSLQWHLKKKMGNVIRSMDRGTEAANNLITYLFLYLVPAIAECI 192
            +VKQ AY+E+AE++F+HLH LSL+WHLKK+MGNV+RSMDRG  AAN L+TYLFLYL+P++AEC+
Sbjct:  343 KVKQTAYVEVAEETFTHLHALSLEWHLKKRMGNVLRSMDRGVSAANTLVTYLFLYLLPSVAECV 406
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BLAST of mRNA_H-elongata_contig117788.1383.1 vs. uniprot
Match: A0A0K6S8V7_9ALVE (Uncharacterized protein n=2 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0K6S8V7_9ALVE)

HSP 1 Score: 107 bits (266), Expect = 2.760e-25
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 RVKQQAYIEIAEQSFSHLHTLSLQWHLKKKMGNVIRSMDRGTEAANNLITYLFLYLVPAIAECIA 195
            RVKQ AYIEIA+ +F HL  LSLQWHLKKKMGNV+RSMDRGTEAA++L+TYLFLYL+P + ECIA
Sbjct:  340 RVKQAAYIEIAQFTFEHLQRLSLQWHLKKKMGNVVRSMDRGTEAADSLMTYLFLYLLPTVGECIA 404
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BLAST of mRNA_H-elongata_contig117788.1383.1 vs. uniprot
Match: A0A7S3GVA3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVA3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.750e-23
Identity = 42/65 (64.62%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 RVKQQAYIEIAEQSFSHLHTLSLQWHLKKKMGNVIRSMDRGTEAANNLITYLFLYLVPAIAECIA 195
            +VKQQA I++ E +F+HLHTLSL WHL KK G+V++SMDRG +AA++L+TYLFL+L+PA+AEC+A
Sbjct:  133 KVKQQASIQLQELTFTHLHTLSLNWHLSKKTGSVMKSMDRGVDAASSLVTYLFLFLIPAMAECLA 197
[Close]
BLAST of mRNA_H-elongata_contig117788.1383.1 vs. uniprot
Match: A0A0G4FKX7_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FKX7_VITBC)

HSP 1 Score: 100 bits (248), Expect = 7.430e-23
Identity = 45/65 (69.23%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 RVKQQAYIEIAEQSFSHLHTLSLQWHLKKKMGNVIRSMDRGTEAANNLITYLFLYLVPAIAECIA 195
            +V+Q AYIEIA+ +F HLH LSLQWHLKK+MGNVIRSMDRG +AAN+L+T+  LYL+P++AEC A
Sbjct:  289 KVQQAAYIEIAQHTFQHLHNLSLQWHLKKRMGNVIRSMDRGCDAANSLMTWGVLYLIPSVAECFA 353
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117788.1383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJY8_9PHAE2.900e-3495.52ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LQQ6_ECTSI1.160e-3394.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4N6_9STRA2.590e-3289.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UVY2_9STRA4.360e-2981.54Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3UX91_HETAK7.910e-2675.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SDW9_9STRA1.470e-2573.02Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2R5G0X4_9STRA1.470e-2570.31ABC transporter ATP-binding protein n=1 Tax=Hondae... [more]
A0A0K6S8V7_9ALVE2.760e-2576.92Uncharacterized protein n=2 Tax=Chromera velia CCM... [more]
A0A7S3GVA3_9STRA3.750e-2364.62Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A0G4FKX7_VITBC7.430e-2369.23Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117788contigH-elongata_contig117788:205..432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.4e-28
Seed eggNOG ortholog2880.D8LQQ6
Preferred namehmt1
KEGG koko:K05661
KEGG TC3.A.1.210
KEGG Pathwayko02010,map02010
GOsGO:0000041,GO:0000166,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006857,GO:0006950,GO:0007034,GO:0008144,GO:0008150,GO:0009636,GO:0009987,GO:0010035,GO:0010038,GO:0015399,GO:0015405,GO:0015440,GO:0015711,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0030001,GO:0030554,GO:0031090,GO:0031166,GO:0031224,GO:0031300,GO:0031301,GO:0031310,GO:0032553,GO:0032555,GO:0032559,GO:0033220,GO:0034220,GO:0034486,GO:0034635,GO:0034775,GO:0035443,GO:0035639,GO:0035672,GO:0036094,GO:0036246,GO:0036249,GO:0042221,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0042939,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044604,GO:0046686,GO:0050896,GO:0051179,GO:0051181,GO:0051234,GO:0051716,GO:0055085,GO:0061687,GO:0070887,GO:0071241,GO:0071248,GO:0071276,GO:0071585,GO:0071627,GO:0071628,GO:0071702,GO:0071705,GO:0071993,GO:0071994,GO:0071995,GO:0071996,GO:0072337,GO:0072348,GO:0097159,GO:0097237,GO:0097367,GO:0097501,GO:0098588,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:0098754,GO:0098805,GO:0098849,GO:0098852,GO:1901265,GO:1901363,GO:1904680,GO:1990170,GO:1990748
EggNOG free text desc.heme-transporting ATPase activity
EggNOG OGsCOG5265@1,KOG0056@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.8694115-CDS-H-elongata_contig117788:204..4321622929686.8694115-CDS-H-elongata_contig117788:204..432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117788 205..432 -
1691679119.1633756-CDS-H-elongata_contig117788:204..4321691679119.1633756-CDS-H-elongata_contig117788:204..432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117788 205..432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117788.1383.1prot_H-elongata_contig117788.1383.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117788 205..432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117788.1383.1

>prot_H-elongata_contig117788.1383.1 ID=prot_H-elongata_contig117788.1383.1|Name=mRNA_H-elongata_contig117788.1383.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
RVKQQAYIEIAEQSFSHLHTLSLQWHLKKKMGNVIRSMDRGTEAANNLIT
YLFLYLVPAIAECIATVSDTFGCVW*
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mRNA from alignment at H-elongata_contig117788:205..432-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117788.1383.1 ID=mRNA_H-elongata_contig117788.1383.1|Name=mRNA_H-elongata_contig117788.1383.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig117788:205..432- (Himanthalia elongata Himel1 dioecious)
AGGGTAAAGCAGCAAGCTTACATCGAGATCGCGGAGCAGTCCTTCTCCCA
CCTGCACACGCTGTCTCTACAGTGGCATCTAAAGAAGAAGATGGGGAACG
TGATCCGTTCGATGGATCGCGGCACCGAGGCCGCGAACAACCTCATCACC
TATCTGTTTCTCTACCTCGTGCCCGCTATCGCCGAGTGCATCGCTACCGT
GAGTGATACCTTTGGATGTGTTTGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig117788:205..432-

>mRNA_H-elongata_contig117788.1383.1 ID=mRNA_H-elongata_contig117788.1383.1|Name=mRNA_H-elongata_contig117788.1383.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig117788:205..432- (Himanthalia elongata Himel1 dioecious)
AGGGTAAAGCAGCAAGCTTACATCGAGATCGCGGAGCAGTCCTTCTCCCA
CCTGCACACGCTGTCTCTACAGTGGCATCTAAAGAAGAAGATGGGGAACG
TGATCCGTTCGATGGATCGCGGCACCGAGGCCGCGAACAACCTCATCACC
TATCTGTTTCTCTACCTCGTGCCCGCTATCGCCGAGTGCATCGCTACCGT
GAGTGATACCTTTGGATGTGTTTGGTAGAGGGTAAAGCAGCAAGCTTACA
TCGAGATCGCGGAGCAGTCCTTCTCCCACCTGCACACGCTGTCTCTACAG
TGGCATCTAAAGAAGAAGATGGGGAACGTGATCCGTTCGATGGATCGCGG
CACCGAGGCCGCGAACAACCTCATCACCTATCTGTTTCTCTACCTCGTGC
CCGCTATCGCCGAGTGCATCGCTACCGTGAGTGATACCTTTGGATGTGTT
TGGTAG
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