prot_H-elongata_contig62400.13811.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig62400.13811.1
Unique Nameprot_H-elongata_contig62400.13811.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length222
Homology
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A4DAE2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DAE2_9STRA)

HSP 1 Score: 162 bits (409), Expect = 5.130e-46
Identity = 93/221 (42.08%), Postives = 140/221 (63.35%), Query Frame = 0
Query:    4 IGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVKKGSKIPATSGVPT--LSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 222
            +GFE   A+PCV+ +  +GE E +V ++VDD+L  ++ KA +    A + +KF++K++G AR+ +G  I  + + R L I Q  Y ES+++KF  ++ +K   T   P   L+KADEP+  ++K +MK+ PYR  VG+LM+ A  TRPDI+ AV  + RF EN G  H  A +K+++YLL TKD GI Y G   G  +E Y+D+D+    D RRSVSG +L
Sbjct:    1 MGFEPADADPCVYTR-GEGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFG-QENAKPCLTPPEPAVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEGYSDADWAGNRDDRRSVSGMLL 218          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.140e-45
Identity = 96/222 (43.24%), Postives = 141/222 (63.51%), Query Frame = 0
Query:    3 AIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 222
            ++GFE   A+PCV+ +  +GE E +V ++VDD+L  ++ KA +    A + +KF++K+MG AR+ +G  I  + + R L I Q  Y ES+++KF  +  K    P   GV  L+KADEP+  ++K +MK+ PYR  VG+LM+ A  TRPDI+ AV  + RF EN G  H  A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +L
Sbjct:   50 SMGFEPADADPCVYTR-GEGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQIEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLL 268          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA)

HSP 1 Score: 164 bits (415), Expect = 5.970e-45
Identity = 93/224 (41.52%), Postives = 141/224 (62.95%), Query Frame = 0
Query:    1 MAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVKKGSK--IPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 222
            + ++GFE   A+PCV+ +  +GE E +V ++VDD+L  ++ KA +    A + +KF++K++G AR+ +G  I  + + R L I Q  Y ES+++KF  +       P   GV  L+KADEP+  ++K +MK+ PYR  VG+LM+ A  TRPDI+ AV  + RF EN G  H  A +K+++YLL TKD GI Y G   G  +EAY+D+++    D RRSVSG +L
Sbjct:   79 LKSMGFEPADADPCVYTR-GEGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPWLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDANWAGNRDDRRSVSGMLL 299          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3HKQ8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HKQ8_9STRA)

HSP 1 Score: 162 bits (411), Expect = 7.470e-45
Identity = 94/224 (41.96%), Postives = 140/224 (62.50%), Query Frame = 0
Query:    1 MAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 222
            + ++GFE   A+PCV+ +  +GE E +V ++VDD+L  ++ K  +    A + +KF++K++G AR+ +G  I  + + R L I Q  Y ES+++KF  +  K    P   GV  L+KADEP+  + K +MK+ PYR  VG+LM+ A  TRPDI+ AV  + RF EN G  H  A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +L
Sbjct:   79 LKSMGFEPADADPCVYTR-GEGEDECIVCLYVDDMLIASRQKTVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEVKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLL 299          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3VCN8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VCN8_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.030e-44
Identity = 95/224 (42.41%), Postives = 141/224 (62.95%), Query Frame = 0
Query:    1 MAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 222
            + ++GFE   A+PCV+ +  +GE E +V ++VDD+L  ++ KA +    A + +KF++K+MG AR+ +   I  + + R L I Q  Y ES+++KF  +  K    P   GV  L+KADEP+  ++K +MK+ PYR  VG+LM+ A  TRPDI+ AV  + RF EN G  H  A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +L
Sbjct:   24 LKSMGFEPADADPCVYTR-GEGEDECIVRLYVDDMLIASRQKAVIASEKAGIAEKFRIKDMGRARFILSIEIDYDIERRTLGISQKAYTESIIKKFGQENTKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLL 244          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3V7V5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3V7V5_9STRA)

HSP 1 Score: 159 bits (401), Expect = 8.260e-44
Identity = 93/224 (41.52%), Postives = 141/224 (62.95%), Query Frame = 0
Query:    1 MAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 222
            + ++GFE   A+PCV+ +  +G+ E +V ++VDD+L  ++ KA +    A + +KF++K++G AR+ +G  I  + + R L I Q  Y ES+++KF  +  K    P   GV  L+KADEP+   E+ +MK+ PYR  VG+LM+ A  TRPDI+ AV  + RF EN G  H  A +K+++YLL TKD GI Y G   G  +EAY+++D+    D RRSVSG +L
Sbjct:   79 LKSMGFEPADADPCVYTR-GEGDDECIVCLYVDDMLIASRQKAVIASVKARIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGRENAKPCLTPLEPGV-NLTKADEPQT--EEAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSNADWAGNRDDRRSVSGMLL 297          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3L5P5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L5P5_9STRA)

HSP 1 Score: 161 bits (407), Expect = 8.940e-44
Identity = 93/224 (41.52%), Postives = 141/224 (62.95%), Query Frame = 0
Query:    1 MAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 222
            + ++GFE   A+PCV+ +  +GE E +V ++VDD+L  ++ KA +    A + +KF++K++G AR+ +G  I  + + R L I Q  Y ES+++KF  +  K    P   GV  L+K DEP+  ++ ++MK+ PYR  VG+LM+ A  TRPDI+ AV  + RF EN G  H  A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +L
Sbjct:   79 LKSMGFEPADADPCVYTR-GEGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGIIQKAYTESIIKKFGQENAKPCLAPLEPGV-QLTKGDEPQTEEDIDKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLL 299          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.080e-43
Identity = 95/224 (42.41%), Postives = 140/224 (62.50%), Query Frame = 0
Query:    1 MAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 222
            + + GFE   A+PCV+ +  +GE E +V ++VDD+L  ++ KA +    A + +KF++K++G AR+ +G  I  + + R L I Q  Y ES+++KF  +  K    P   GV  L+KADEP+  ++K +MK+ PYR  VG+LM+ A  TRPDI+ AV  + RF EN G  H  A +K+++YLL TKD GI Y G   G   EAY+D+D+    D RRSVSG +L
Sbjct:  240 LKSTGFEPADADPCVYTR-GEGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLL 460          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A2P4YNZ8_9STRA (Retrovirus-related pol Polyprotein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YNZ8_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.120e-43
Identity = 89/224 (39.73%), Postives = 142/224 (63.39%), Query Frame = 0
Query:    1 MAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVKKGSKIPATSGVPT--LSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 222
            +  +GF+ G A PCV+ +  +G++E +V ++VDD+L  +++K  +    A + +KF++K++G AR+ +G  I  + + + L I Q  Y E ++ KF ++  +K   TS  P+  L+KADEP+N  +K +MK+ PYR  VG+LM+ A  TRPDIA AV  + R+ EN    H  A +K+++YL+ TKD  ITY G+  G  + AY+D+D+    D RRSVSG +L
Sbjct:    5 LKTMGFKAGDAGPCVYTR-GEGDSECIVCLYVDDMLIASREKDIIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERKALTISQRAYTEPIINKFGLE-NAKPSLTSLDPSVHLTKADEPQNADDKAKMKSKPYRSLVGSLMYLACGTRPDIAVAVAKLSRYLENPDHRHWDAGIKVVRYLMKTKDAAITYDGR-MGTELTAYSDADWAGNRDDRRSVSGVML 225          
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Match: A0A6A3HAR6_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=A0A6A3HAR6_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.250e-43
Identity = 93/224 (41.52%), Postives = 140/224 (62.50%), Query Frame = 0
Query:    1 MAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVK--KGSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPDIASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGVCLDTRRSVSGAVL 222
            + ++GFE   A+PCV+ +  +GE E +V ++VDD+L  ++ KA +    A + +KF++K+ G AR+ +   I  + + R L I Q  Y ES+++KF  +  K    P   GV  L+K+DEP+  ++K +MK+ PYR  VG+LM+ A  TRPDI+ AV  + RF EN G  H  A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +L
Sbjct:   79 LKSVGFEPADADPCVYTR-GEGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDTGRARFILSIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKSDEPQTEEDKAKMKSRPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWVGNRDDRRSVSGMLL 299          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62400.13811.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A4DAE2_9STRA5.130e-4642.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4F359_9STRA1.140e-4543.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0MK94_9STRA5.970e-4541.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3HKQ8_9STRA7.470e-4541.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3VCN8_9STRA1.030e-4442.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3V7V5_9STRA8.260e-4441.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3L5P5_9STRA8.940e-4441.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3Q908_9STRA1.080e-4342.41Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P4YNZ8_9STRA1.120e-4339.73Retrovirus-related pol Polyprotein (Fragment) n=1 ... [more]
A0A6A3HAR6_9STRA1.250e-4341.52Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..101
e-value: 2.3E-14
score: 53.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62400contigH-elongata_contig62400:113..778 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62400.13811.1mRNA_H-elongata_contig62400.13811.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig62400 113..1279 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig62400.13811.1 ID=prot_H-elongata_contig62400.13811.1|Name=mRNA_H-elongata_contig62400.13811.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=222bp
MAAIGFEQGKANPCVFCKVADGEAEVVVVVHVDDILAHAKDKATMDRFAA
ELGQKFKLKNMGNARYYMGCHITRNRKARELKIDQPLYVESMVEKFNVKK
GSKIPATSGVPTLSKADEPRNPKEKEEMKTFPYREAVGALMWTATMTRPD
IASAVRAVDRFFENSGPAHKKAVMKIMQYLLHTKDWGITYGGQGCGLCME
AYTDSDFGVCLDTRRSVSGAVL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2