prot_H-elongata_contig117742.1380.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig117742.1380.1
Unique Nameprot_H-elongata_contig117742.1380.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length287
Homology
BLAST of mRNA_H-elongata_contig117742.1380.1 vs. uniprot
Match: A0A6C0BSH5_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BSH5_9ZZZZ)

HSP 1 Score: 52.0 bits (123), Expect = 1.060e-5
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 0
Query:    1 MVDVK-KRCANNGCFKQPSYGVAGSKMANYCAVHALEGMVDVVKIMC 46
            MVDVK KRC + GC KQP + + GS    YCA+H ++GMV+V    C
Sbjct:    1 MVDVKNKRCEHEGCDKQPVFNLLGSSKGLYCAIHKMDGMVNVKDRRC 47          
BLAST of mRNA_H-elongata_contig117742.1380.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 3.090e-5
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 0
Query:    1 MVDV-KKRCANNGCFKQPSYGVAGSKMANYCAVHALEGMV 39
            MVDV  KRC + GC K+PSYG  GSK A  CA HAL+GMV
Sbjct:    1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40          
BLAST of mRNA_H-elongata_contig117742.1380.1 vs. uniprot
Match: A0A6H5LBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBM3_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.180e-5
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    1 MVDVK--KRCANNGCFKQPSYGVAGSKMANYCAVHALEGMV 39
            MVD+   +RCA+  C K P+YGV G++ A +CA HAL+GMV
Sbjct:    8 MVDIHNIRRCAHEDCVKHPTYGVPGTRKAEFCAPHALDGMV 48          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117742.1380.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6C0BSH5_9ZZZZ1.060e-551.06Uncharacterized protein (Fragment) n=1 Tax=viral m... [more]
D7FUJ6_ECTSI3.090e-565.00EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5LBM3_9PHAE5.180e-553.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117742contigH-elongata_contig117742:234..1094 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117742.1380.1mRNA_H-elongata_contig117742.1380.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig117742 190..1510 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig117742.1380.1 ID=prot_H-elongata_contig117742.1380.1|Name=mRNA_H-elongata_contig117742.1380.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=287bp
MVDVKKRCANNGCFKQPSYGVAGSKMANYCAVHALEGMVDVVKIMCTSDG
VAGSKKAKYCAVHALEGMVDVMNKRCASDGCFKKPTYGVAGSKKAMYCAV
HALEGMVDVVNKMCACDGCFKQPIYGVAGSKKAMYCALHVLEGMVDVVNK
RCGSDGCFKRPGYGVAGSKKANYCVVHGLEGMVDVKKRCACDGCLKHPSY
DVPGGKSVEFCTLHSLEVIVDIEIKRCDDYILAAQNQARTRKRMPEISAR
EESVLERERTTKFKRPYYNASSDAKSVKPELSLSLP*
back to top