prot_H-elongata_contig62177.13786.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig62177.13786.1
Unique Nameprot_H-elongata_contig62177.13786.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length251
Homology
BLAST of mRNA_H-elongata_contig62177.13786.1 vs. uniprot
Match: D8LSM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM7_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 1.150e-93
Identity = 164/254 (64.57%), Postives = 190/254 (74.80%), Query Frame = 0
Query:    1 FTPQVAFLTDAKAFGGCYPSALMALTIKQWGTVIGRVRRVLVPHLLYEPRRRDKYRAKVAALALDPAVQGIVYCGIFMFMPLSNALLPLLLKESVYLIWVAKEVFQILAPAGLVETMASALETPLSVVMTAGDVGKWRETPQPEKRLLLGRRLAQARHDAMPPGVCFKLEMAMPFSALLRVLPGVVHATLGGGGGP---EGSEVTASGRGVVGMIAQMLPVTKFFVIMMAYVKLLTVKNRQLEDDVRVLKGLKV 251
            F   VA+L D+  FGG Y +AL  LT+KQWGTV+GRVRRVLVPHL+YEP+R  KYRA+V+ALALDPAVQGIVYCGIFM MPLS AL+PLLLKESVYL+WV KE  QI AP GLVET+ +  E  +SV MTAGD  KWR+TP  EKRLLLGRRLAQA         CFKLEM MPF   LRVLP V+  +LG GGG    EG+E  A+G G  G + + LP+ K  V++MAYVKLL VKN QLEDDVR+L GLK+
Sbjct:  307 FMSAVAYLMDSTKFGGSYQAALAVLTLKQWGTVVGRVRRVLVPHLIYEPQRYVKYRARVSALALDPAVQGIVYCGIFMLMPLSLALIPLLLKESVYLLWVMKEALQITAP-GLVETLTTLSEPLMSVFMTAGDSEKWRDTPAGEKRLLLGRRLAQA---------CFKLEMVMPFGVALRVLPAVLQTSLGAGGGVADGEGAEGAAAGAG--GQLGRALPLVKVLVLVMAYVKLLVVKNGQLEDDVRILSGLKI 548          
BLAST of mRNA_H-elongata_contig62177.13786.1 vs. uniprot
Match: A0A6H5KS72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS72_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 2.930e-72
Identity = 132/204 (64.71%), Postives = 151/204 (74.02%), Query Frame = 0
Query:   51 RRDKYRAKVAALALDPAVQGIVYCGIFMFMPLSNALLPLLLKESVYLIWVAKEVFQILAPAGLVETMASALETPLSVVMTAGDVGKWRETPQPEKRLLLGRRLAQARHDAMPPGVCFKLEMAMPFSALLRVLPGVVHATLGGGGGP---EGSEVTASGRGVVGMIAQMLPVTKFFVIMMAYVKLLTVKNRQLEDDVRVLKGLKV 251
            R  KYRA+V+ALALDPAVQGIVYCGIFM MPLS AL+PLLLKESVYL+WV KE  QI AP GLVET+ +  E  +SV MTAGD  KWR+TP  EKRLLLGRRLAQA         CFKLEM MPF   LRVLP V+ A+LG GG     EG+E  A+G G  G + ++LP+ K  V++MAYVKLL VKN QLEDDVR+L GLKV
Sbjct:   16 RYVKYRARVSALALDPAVQGIVYCGIFMLMPLSLALIPLLLKESVYLLWVMKEALQITAP-GLVETLTTLSEPLMSVFMTAGDSEKWRDTPAGEKRLLLGRRLAQA---------CFKLEMVMPFGVALRVLPAVLQASLGAGGSVADGEGAEGAAAGAG--GQLGRVLPLVKVLVLVMAYVKLLVVKNGQLEDDVRILSGLKV 207          
BLAST of mRNA_H-elongata_contig62177.13786.1 vs. uniprot
Match: A0A835YJH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH6_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.470e-29
Identity = 89/236 (37.71%), Postives = 125/236 (52.97%), Query Frame = 0
Query:   18 YPSALMALTIKQWGTVIGRVRRVLVPHLLYEPRRRDKYRAKVAALALDPAVQGIVYCGIFMFM--PLSNALLPLLLKESVYLIWVAKEVFQILAPAGLVETMASALETPLSVVMTAGDVGKWRETPQPEKRLLLGRRLAQARHDAMPPGVCFKLEMAMPFSALLRVLPGVVHATLGGGGGPEGSEVTASGRGVVGMIAQMLPVTKFFVIMMAYVKLLTVKNRQLEDDVRVLKGLKV 251
            Y  AL+AL IK W  V+GR+RR LVP L  EP +   +RA+  ALA DPAVQ  ++C + +    PLS AL PL L+E  YL  VA+EV  I AP  L   + + +  P +V++  GDV  WR   +  + + +GRR++QA         CFKLE+A   +ALLR  P  + A                         ++     F + + AY +LL+V++ QL  DVRVL GLK+
Sbjct:   89 YQGALLALIIKYWCVVLGRMRRTLVPGLAREPGKFGLFRARARALARDPAVQTSLFCALALTRQPPLSAALAPLALREGAYLFLVAREVVSIAAPRAL-PALGALVRWPAAVLVAKGDVRAWRAMGEGAQLVEVGRRVSQA---------CFKLEVAALGAALLRDYPRAMKAD-----------------------NKLAAAAAFALYIGAYAQLLSVRHAQLGGDVRVLSGLKL 291          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62177.13786.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSM7_ECTSI1.150e-9364.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KS72_9PHAE2.930e-7264.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJH6_9STRA3.470e-2937.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..80
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 230..251
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 208..229
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..58
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 81..207
NoneNo IPR availableTMHMMTMhelixcoord: 60..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62177contigH-elongata_contig62177:614..3340 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62177.13786.1mRNA_H-elongata_contig62177.13786.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig62177 614..3340 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig62177.13786.1 ID=prot_H-elongata_contig62177.13786.1|Name=mRNA_H-elongata_contig62177.13786.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
FTPQVAFLTDAKAFGGCYPSALMALTIKQWGTVIGRVRRVLVPHLLYEPR
RRDKYRAKVAALALDPAVQGIVYCGIFMFMPLSNALLPLLLKESVYLIWV
AKEVFQILAPAGLVETMASALETPLSVVMTAGDVGKWRETPQPEKRLLLG
RRLAQARHDAMPPGVCFKLEMAMPFSALLRVLPGVVHATLGGGGGPEGSE
VTASGRGVVGMIAQMLPVTKFFVIMMAYVKLLTVKNRQLEDDVRVLKGLK
V
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