mRNA_H-elongata_contig117684.1379.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117684.1379.1
Unique NamemRNA_H-elongata_contig117684.1379.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig117684.1379.1 vs. uniprot
Match: D7FVR2_ECTSI (ARL6, ARF-like Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR2_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 5.350e-13
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 MGLFKRIATAITGFSRGSVRILVVGLDNSGKSTLIEHIKPNK 126
            MGLFK+IA+A+ G SRG++RILVVGLDNSGKSTLIEHIKPNK
Sbjct:    1 MGLFKKIASAM-GRSRGNMRILVVGLDNSGKSTLIEHIKPNK 41
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BLAST of mRNA_H-elongata_contig117684.1379.1 vs. uniprot
Match: A0A3R7EJ99_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7EJ99_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.350e-10
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 MGLFKRIATAITGFSRGSVRILVVGLDNSGKSTLIEHIKPNKVR 132
            MGLFK++A ++ G  + SVRILVVGLDNSGK+TL+ H+KP K++
Sbjct:   23 MGLFKKLANSL-GMKKQSVRILVVGLDNSGKTTLVNHLKPKKLQ 65
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BLAST of mRNA_H-elongata_contig117684.1379.1 vs. uniprot
Match: A0A7S2V202_9STRA (ADP-ribosylation factor-like protein 6 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V202_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.000e-9
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 MGLFKRIATAITGFSRGSVRILVVGLDNSGKSTLIEHIKPNK 126
            MG FKRIA ++ GF +  VRIL+VGLDNSGK+TLI HIKP K
Sbjct:    1 MGFFKRIANSL-GFQKHEVRILIVGLDNSGKTTLINHIKPKK 41
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BLAST of mRNA_H-elongata_contig117684.1379.1 vs. uniprot
Match: A0A485KFA7_9STRA (Aste57867_3371 protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A485KFA7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.770e-9
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 MGLFKRIATAITGFSRGSVRILVVGLDNSGKSTLIEHIKPNKVR 132
            MGLFK++A ++ G  + SVRILVVGLDNSGK+TL+ H+KP K++
Sbjct:    1 MGLFKKLANSL-GMKKQSVRILVVGLDNSGKTTLVNHLKPKKLQ 43
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BLAST of mRNA_H-elongata_contig117684.1379.1 vs. uniprot
Match: A0A2D4BWT4_PYTIN (ADP-ribosylation factor family n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BWT4_PYTIN)

HSP 1 Score: 57.8 bits (138), Expect = 3.910e-9
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 MGLFKRIATAITGFSRGSVRILVVGLDNSGKSTLIEHIKPNK 126
            MGLFK++AT++ G  +  VRILVVGLDNSGK+TL+ H+KP K
Sbjct:    1 MGLFKQLATSL-GMKKTEVRILVVGLDNSGKTTLVNHLKPKK 41
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BLAST of mRNA_H-elongata_contig117684.1379.1 vs. uniprot
Match: A0A6S9ITP1_HETAK (ADP-ribosylation factor-like protein 6 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ITP1_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 6.280e-9
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 MGLFKRIATAITGFSRGSVRILVVGLDNSGKSTLIEHIKPNK 126
            MGLFK+IA A+ G S   VRILVVGLDNSGK+TLI HIKP K
Sbjct:   14 MGLFKKIAQAM-GMSWVEVRILVVGLDNSGKTTLINHIKPKK 54
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BLAST of mRNA_H-elongata_contig117684.1379.1 vs. uniprot
Match: A0A067CAA2_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CAA2_SAPPC)

HSP 1 Score: 57.4 bits (137), Expect = 7.720e-9
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 MGLFKRIATAITGFSRGSVRILVVGLDNSGKSTLIEHIKPNK 126
            MGLFK++A+A+ G  +  VRILVVGLDNSGK+TL+ H+KP K
Sbjct:    1 MGLFKQLASAL-GMKKAVVRILVVGLDNSGKTTLVNHLKPRK 41
[Close]
BLAST of mRNA_H-elongata_contig117684.1379.1 vs. uniprot
Match: A0A225UHK2_9STRA (ADP-ribosylation factor protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UHK2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.010e-8
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 MGLFKRIATAITGFSRGSVRILVVGLDNSGKSTLIEHIKPNK 126
            MGLFK +A+A+ G  +  VRILVVGLDNSGK+TL+ H+KP K
Sbjct:    1 MGLFKLLASAL-GIKKTQVRILVVGLDNSGKTTLVNHLKPKK 41
[Close]
BLAST of mRNA_H-elongata_contig117684.1379.1 vs. uniprot
Match: A0A0W8DJ51_PHYNI (Coiled-coil domain-containing protein 22 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DJ51_PHYNI)

HSP 1 Score: 55.5 bits (132), Expect = 1.800e-8
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 MGLFKRIATAITGFSRGSVRILVVGLDNSGKSTLIEHIKPNK 126
            MGLFK +A A+ G  +  VRILVVGLDNSGK+TL+ H+KP K
Sbjct:    1 MGLFKVLANAL-GLKKTQVRILVVGLDNSGKTTLVNHLKPKK 41
[Close]
BLAST of mRNA_H-elongata_contig117684.1379.1 vs. uniprot
Match: H3G5F9_PHYRM (ADP-ribosylation factor-like protein 6 n=21 Tax=Phytophthora TaxID=4783 RepID=H3G5F9_PHYRM)

HSP 1 Score: 56.2 bits (134), Expect = 1.930e-8
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 MGLFKRIATAITGFSRGSVRILVVGLDNSGKSTLIEHIKPNK 126
            MGLFK +A+A+ G  +  VRILVVGLDNSGK+TL+ H+KP K
Sbjct:    1 MGLFKLLASAL-GIKKTQVRILVVGLDNSGKTTLVNHLKPKK 41
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117684.1379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVR2_ECTSI5.350e-1383.33ARL6, ARF-like Ras superfamily GTPase n=1 Tax=Ecto... [more]
A0A3R7EJ99_9STRA8.350e-1061.36Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7S2V202_9STRA1.000e-969.05ADP-ribosylation factor-like protein 6 n=1 Tax=Fib... [more]
A0A485KFA7_9STRA2.770e-961.36Aste57867_3371 protein n=7 Tax=Aphanomyces TaxID=1... [more]
A0A2D4BWT4_PYTIN3.910e-964.29ADP-ribosylation factor family n=2 Tax=Pythium Tax... [more]
A0A6S9ITP1_HETAK6.280e-973.81ADP-ribosylation factor-like protein 6 n=1 Tax=Het... [more]
A0A067CAA2_SAPPC7.720e-964.29Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A225UHK2_9STRA1.010e-864.29ADP-ribosylation factor protein (Fragment) n=1 Tax... [more]
A0A0W8DJ51_PHYNI1.800e-864.29Coiled-coil domain-containing protein 22 n=1 Tax=P... [more]
H3G5F9_PHYRM1.930e-864.29ADP-ribosylation factor-like protein 6 n=21 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117684contigH-elongata_contig117684:125..256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue8.6e-10
Seed eggNOG ortholog2880.D7FVR2
Preferred nameARL6
KEGG koko:K07951,ko:K07977
GOsGO:0000166,GO:0001654,GO:0001882,GO:0001883,GO:0003008,GO:0003407,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005874,GO:0005879,GO:0005881,GO:0005886,GO:0005929,GO:0005930,GO:0006464,GO:0006471,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007264,GO:0007265,GO:0007267,GO:0007275,GO:0007368,GO:0007369,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0008589,GO:0008593,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009966,GO:0009987,GO:0010646,GO:0010842,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016055,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030117,GO:0030154,GO:0030425,GO:0031090,GO:0031253,GO:0032400,GO:0032401,GO:0032402,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032594,GO:0032838,GO:0032991,GO:0033036,GO:0033059,GO:0033333,GO:0033339,GO:0033365,GO:0034613,GO:0034622,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0036477,GO:0042886,GO:0042995,GO:0043005,GO:0043010,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043473,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0045444,GO:0046907,GO:0048475,GO:0048513,GO:0048583,GO:0048592,GO:0048593,GO:0048598,GO:0048646,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051179,GO:0051234,GO:0051258,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051716,GO:0051875,GO:0051904,GO:0051905,GO:0060041,GO:0060042,GO:0060170,GO:0060271,GO:0060322,GO:0061024,GO:0061512,GO:0061951,GO:0065003,GO:0065007,GO:0070121,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0090596,GO:0097014,GO:0097159,GO:0097367,GO:0097447,GO:0097458,GO:0097499,GO:0098588,GO:0098590,GO:0098796,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0198738,GO:1901265,GO:1901363,GO:1901564,GO:1903445,GO:1905114,GO:1990778
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0070@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04031,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionARL6, ARF-like Ras superfamily GTPase
Ec32 orthologEc-03_003200.1
Exons1
Model size132
Cds size132
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.56433-CDS-H-elongata_contig117684:124..2561622929686.56433-CDS-H-elongata_contig117684:124..256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117684 125..256 +
1691679119.0786355-CDS-H-elongata_contig117684:124..2561691679119.0786355-CDS-H-elongata_contig117684:124..256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117684 125..256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117684.1379.1prot_H-elongata_contig117684.1379.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117684 125..256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117684.1379.1

>prot_H-elongata_contig117684.1379.1 ID=prot_H-elongata_contig117684.1379.1|Name=mRNA_H-elongata_contig117684.1379.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MGLFKRIATAITGFSRGSVRILVVGLDNSGKSTLIEHIKPNKVR
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mRNA from alignment at H-elongata_contig117684:125..256+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117684.1379.1 ID=mRNA_H-elongata_contig117684.1379.1|Name=mRNA_H-elongata_contig117684.1379.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig117684:125..256+ (Himanthalia elongata Himel1 dioecious)
ATGGGACTGTTCAAGAGAATCGCAACGGCCATCACCGGCTTCTCGCGTGG
GAGCGTACGCATCCTGGTTGTTGGGCTCGACAACAGTGGGAAGTCTACCC
TTATCGAGCACATCAAGCCTAACAAGGTAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig117684:125..256+

>mRNA_H-elongata_contig117684.1379.1 ID=mRNA_H-elongata_contig117684.1379.1|Name=mRNA_H-elongata_contig117684.1379.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig117684:125..256+ (Himanthalia elongata Himel1 dioecious)
ATGGGACTGTTCAAGAGAATCGCAACGGCCATCACCGGCTTCTCGCGTGG
GAGCGTACGCATCCTGGTTGTTGGGCTCGACAACAGTGGGAAGTCTACCC
TTATCGAGCACATCAAGCCTAACAAGGTAAGGATGGGACTGTTCAAGAGA
ATCGCAACGGCCATCACCGGCTTCTCGCGTGGGAGCGTACGCATCCTGGT
TGTTGGGCTCGACAACAGTGGGAAGTCTACCCTTATCGAGCACATCAAGC
CTAACAAGGTAAGG
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