prot_H-elongata_contig62142.13782.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig62142.13782.1
Unique Nameprot_H-elongata_contig62142.13782.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length165
Homology
[Close]
BLAST of mRNA_H-elongata_contig62142.13782.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 65.5 bits (158), Expect = 2.480e-9
Identity = 50/163 (30.67%), Postives = 77/163 (47.24%), Query Frame = 0 
Query:    1 AWRNLETHYRAKGTREILRVSHEINEKIMEPGGDPFKFMIEIDRLAADLNRLGDKSVTELRKCVIIISGLPTDYEMECRMLENNPVGLNRTEIERVVGNQYNRLLRQRQNSKAMPASKGHI------TVNRGKGGDR---RHHPKFNRKCFNCGKGGHYARDC 154
            AW  L   Y        + ++  ++E  ME G    K + + D L   L  LG+  + E R+ VI++S LPT+YE+ C ++EN        E++  +  +Y RL ++    +A+ A+          T   GKG      R +  F  KCFNCG+ GH  RDC
Sbjct:   83 AWNTLRDFYNRTTMHNRVTMTRRLHEFKMEGGVTMAKHLDDFDELIVGLQTLGEP-LDEARQLVILLSSLPTEYELICSIVENAK-DFTLIEVKEKLLKEYERLDKKEGAERALKATANGSKFRCAKTFRGGKGSKAFGSRKNGGFKGKCFNCGQVGHMKRDC 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62142.13782.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
H3H572_PHYRM2.480e-930.67Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 140..156
e-value: 5.8E-5
score: 32.5
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 139..155
e-value: 2.0E-6
score: 27.6
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 139..155
score: 11.07
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..92
e-value: 8.8E-9
score: 35.2
NoneNo IPR availableGENE3D4.10.60.10coord: 122..164
e-value: 2.5E-7
score: 32.5
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 125..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62142contigH-elongata_contig62142:143..637 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62142.13782.1mRNA_H-elongata_contig62142.13782.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig62142 143..637 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig62142.13782.1 ID=prot_H-elongata_contig62142.13782.1|Name=mRNA_H-elongata_contig62142.13782.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
AWRNLETHYRAKGTREILRVSHEINEKIMEPGGDPFKFMIEIDRLAADLN
RLGDKSVTELRKCVIIISGLPTDYEMECRMLENNPVGLNRTEIERVVGNQ
YNRLLRQRQNSKAMPASKGHITVNRGKGGDRRHHPKFNRKCFNCGKGGHY
ARDCRASEESGATDN
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf