mRNA_H-elongata_contig62010.13764.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62010.13764.1
Unique NamemRNA_H-elongata_contig62010.13764.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62010.13764.1 vs. uniprot
Match: A0A6H5KKF3_9PHAE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKF3_9PHAE)

HSP 1 Score: 383 bits (983), Expect = 3.530e-130
Identity = 177/214 (82.71%), Postives = 199/214 (92.99%), Query Frame = 1
Query:    1 VLKVELTQRLKLDDAGIDPPNKFPWAMYTPNGQRRLSSLKDAIASRLVFIFKGGNFIWPGVEIGHVQTVRSLQKLGSIEMKTLSMQPLVFEAKDFLLETECQHIKDKADPHMKPSPVSLMDHDKGKPDTNWRTSTTYFMPSSNDPTLQGIDQRVEDFTRTPRSHQEHVQVLKYETGQRYTAHHDYFNPKLYQKDPRTLKNMDGGRKNRMITVFW 642
            VL  ELT+RL+LDD G DPPNKFPWAMYTP+GQRR+SSL+DAIASRLVFIFKGGNFIWPGVE+GHVQTV  L+ LGSI+MKTLSM+PLVFEA++FLL+ EC+HI++KADPHMKPSPVSLMDHDKGKPDTNWRTSTTYFMPS+ DP LQGID+RVE+ TR P+SHQE VQVLKY+ GQRYTAHHDYFNPK+YQKD RT+KNMDGGRKNRMITVFW
Sbjct:  157 VLHAELTERLRLDDVGPDPPNKFPWAMYTPDGQRRISSLEDAIASRLVFIFKGGNFIWPGVEVGHVQTVHGLETLGSIDMKTLSMEPLVFEARNFLLDEECKHIREKADPHMKPSPVSLMDHDKGKPDTNWRTSTTYFMPSTRDPLLQGIDRRVEELTRVPKSHQEQVQVLKYDKGQRYTAHHDYFNPKMYQKDERTMKNMDGGRKNRMITVFW 370          
BLAST of mRNA_H-elongata_contig62010.13764.1 vs. uniprot
Match: A0A4D9CPD2_9STRA (Fe2OG dioxygenase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPD2_9STRA)

HSP 1 Score: 213 bits (542), Expect = 9.240e-64
Identity = 102/196 (52.04%), Postives = 139/196 (70.92%), Query Frame = 1
Query:   55 PPNKFPWAMYTPNGQRRLSSLKDAIASRLVFIFKGGNFIWPGVEIGHVQTVRSLQKLGSIEMKTLSMQPLVFEAKDFLLETECQHIKDKADPHMKPSPVSLMDHDKGKPDTNWRTSTTYFMPSSNDPTLQGIDQRVEDFTRTPRSHQEHVQVLKYETGQRYTAHHDYFNPKLYQKDPRTLKNMDGGRKNRMITVFW 642
            P  + PW+M++P G    S L     +  V +++GG FIWPGV  G+V  V +L +LGS++M+TLSM PLVF  ++FLL  EC +I+D A+PHM+ S V LMDHDKGK  T+WRTS+T+F+ S +   +Q +D+RV   TR P SHQE VQVL+YE+ QRY AHHD+F+ +LY +DP TLK +D G++NRM TV W
Sbjct:  162 PNTQKPWSMFSPQGIAIDSLLDLQEGANDVLLYEGGKFIWPGVREGYVTQVTALDRLGSVKMQTLSMSPLVFSVENFLLPEECTYIRDVAEPHMRQSGVKLMDHDKGKAATDWRTSSTHFLASKHHARIQSVDRRVAGLTRQPVSHQEDVQVLRYESTQRYDAHHDFFDRRLYARDPDTLKLIDNGKRNRMATVLW 357          
BLAST of mRNA_H-elongata_contig62010.13764.1 vs. uniprot
Match: A0A7S2WGY1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGY1_9STRA)

HSP 1 Score: 209 bits (531), Expect = 9.380e-62
Identity = 101/207 (48.79%), Postives = 143/207 (69.08%), Query Frame = 1
Query:   22 QRLKLDDAGIDPPNKFPWAMYTPNGQRRLSSLKDAIASRLVFIFKGGNFIWPGVEIGHVQTVRSLQKLGSIEMKTLSMQPLVFEAKDFLLETECQHIKDKADPHMKPSPVSLMDHDKGKPDTNWRTSTTYFMPSSNDPTLQGIDQRVEDFTRTPRSHQEHVQVLKYETGQRYTAHHDYFNPKLYQKDPRTLKNMDGGRKNRMITVFW 642
            ++L  D+  +      PW M+T +G + + SL D ++   + +F+GGNFIWPG+ +GH ++V  L    S+ ++T+S++PLVF  +DFL   EC +I+ +A PHM  S VSLMD D GKP TNWRTS TYFMPSS++P L GID+R+   T+ P +HQE++QVL+YE  Q+Y AHHDYF+P+LY KD  TL+    G++NRM TV W
Sbjct:  191 RKLLEDELKVQNRTVNPWGMFTGDG-KPVHSLTDLLSVSHILVFEGGNFIWPGIRVGHTRSV-FLDDGVSVTLETISLRPLVFSIRDFLSTYECTYIQREASPHMAQSGVSLMDKDIGKPATNWRTSATYFMPSSSNPPLLGIDRRIASLTKQPLTHQEYLQVLRYEETQKYDAHHDYFDPRLYSKDRHTLELTQHGKRNRMATVLW 395          
BLAST of mRNA_H-elongata_contig62010.13764.1 vs. uniprot
Match: A0A1V9ZLT6_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZLT6_9STRA)

HSP 1 Score: 205 bits (522), Expect = 3.000e-61
Identity = 105/215 (48.84%), Postives = 143/215 (66.51%), Query Frame = 1
Query:    4 LKVELTQRLK--LDDAGIDPPNKFPWAMYTPNGQRRLSSLKDAIASRLVFIFKGGNFIWPGVEIGHVQTVRSLQKLGSIEMKTLSMQPLVFEAKDFLLETECQHIKDKADPHMKPSPVSLMDHDKGKPDTNWRTSTTYFMPSSNDPTLQGIDQRVEDFTRTPRSHQEHVQVLKYETGQRYTAHHDYFNPKLYQKDPRTLKNMDGGRKNRMITVFW 642
            L+V L ++L   L    ++   K  WA +T +G++ L  L      +++++ +GG FIWPG+ IGH +T+++L  LG I M+TL+M PLVF  ++FL + E   I D +  H+ PS VS  D D+GKP T WRTSTTYF+PS   P +QGIDQRVED  R P+SHQE VQVL+YE  Q+Y  H DYF  + YQK+P+ L+N+  G KNRMITVFW
Sbjct:  109 LRVALEEKLDIPLPKTQLERQFKQLWAFFTTHGEK-LDGLSKLYQDKVIYMMEGGQFIWPGIRIGHKRTIKNLHGLGDIVMETLAMVPLVFSVEEFLRDDEIDVILDLSMEHLAPSGVSHHDGDEGKPATEWRTSTTYFLPSYRHPLIQGIDQRVEDLVRVPKSHQEDVQVLRYELTQKYDHHTDYFPAESYQKNPQLLENIHHGFKNRMITVFW 322          
BLAST of mRNA_H-elongata_contig62010.13764.1 vs. uniprot
Match: A0A067BMV5_SAPPC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BMV5_SAPPC)

HSP 1 Score: 199 bits (505), Expect = 1.180e-59
Identity = 102/215 (47.44%), Postives = 136/215 (63.26%), Query Frame = 1
Query:    4 LKVELTQRLKLDDAGIDPPNKFP--WAMYTPNGQRRLSSLKDAIASRLVFIFKGGNFIWPGVEIGHVQTVRSLQKLGSIEMKTLSMQPLVFEAKDFLLETECQHIKDKADPHMKPSPVSLMDHDKGKPDTNWRTSTTYFMPSSNDPTLQGIDQRVEDFTRTPRSHQEHVQVLKYETGQRYTAHHDYFNPKLYQKDPRTLKNMDGGRKNRMITVFW 642
            L+ EL   LK+     D   K+   WA ++P G R L  L    A+ LV++F+GG FIWPG+ IGH +T+ +L  LG + ++TL+M PLVF  ++FL + E   I D +  H+ PS V+L D D GKP T WRTSTTYF+PS     + GIDQRV+D  + P SHQE VQVL+YE  Q+Y  H DYF  + YQ  P  ++++  G KNRMITVFW
Sbjct:   27 LRAELESVLKMSVPSSDIEKKYKQRWAFFSPTGDR-LWQLSQLHAASLVYVFEGGQFIWPGIHIGHKRTIPNLHGLGDVVLETLAMTPLVFSVEEFLRDDEIDVILDLSKEHLAPSGVTLQDGDAGKPATEWRTSTTYFLPSHRHALVMGIDQRVQDLIKVPVSHQEDVQVLRYEESQKYDHHTDYFPVESYQNSPDVVESIHHGFKNRMITVFW 240          
BLAST of mRNA_H-elongata_contig62010.13764.1 vs. uniprot
Match: T0Q0B5_SAPDV (Fe2OG dioxygenase domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q0B5_SAPDV)

HSP 1 Score: 193 bits (491), Expect = 1.380e-56
Identity = 100/215 (46.51%), Postives = 137/215 (63.72%), Query Frame = 1
Query:    4 LKVELTQRLK--LDDAGIDPPNKFPWAMYTPNGQRRLSSLKDAIASRLVFIFKGGNFIWPGVEIGHVQTVRSLQKLGSIEMKTLSMQPLVFEAKDFLLETECQHIKDKADPHMKPSPVSLMDHDKGKPDTNWRTSTTYFMPSSNDPTLQGIDQRVEDFTRTPRSHQEHVQVLKYETGQRYTAHHDYFNPKLYQKDPRTLKNMDGGRKNRMITVFW 642
            L+ EL   L+  L  + I+   K  WA ++  G R L  L    A+ +V++F+GG FIWPG+ +GH +TV +L  LG + ++TL+M PLVF  ++FL + E   I D +  H+ PS V+L D D GKP T WRTSTTYF+PS     ++GID+RVED  + P SHQE VQVL+YE  Q+Y  H DYF  + YQ  P  ++++  G KNRMITVFW
Sbjct:  112 LRAELESLLQIALPSSDIEKKYKQRWAFFSARGDR-LWQLSQIHAASIVYVFEGGQFIWPGIRVGHKRTVPNLHGLGDVVLETLAMTPLVFSVEEFLRDDEIDVILDLSMEHLAPSGVTLQDGDAGKPATEWRTSTTYFLPSHRHALVEGIDKRVEDLVKVPISHQEDVQVLRYEETQKYDHHTDYFPVESYQNSPDVVESIHHGYKNRMITVFW 325          
BLAST of mRNA_H-elongata_contig62010.13764.1 vs. uniprot
Match: K3WFC0_GLOUD (Fe2OG dioxygenase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFC0_GLOUD)

HSP 1 Score: 194 bits (492), Expect = 2.340e-56
Identity = 96/193 (49.74%), Postives = 133/193 (68.91%), Query Frame = 1
Query:   64 KFPWAMYTPNGQRRLSSLKDAIASRLVFIFKGGNFIWPGVEIGHVQTVRSLQKLGSIEMKTLSMQPLVFEAKDFLLETECQHIKDKADPHMKPSPVSLMDHDKGKPDTNWRTSTTYFMPSSNDPTLQGIDQRVEDFTRTPRSHQEHVQVLKYETGQRYTAHHDYFNPKLYQKDPRTLKNMDGGRKNRMITVFW 642
            K P+A +TP+G R  + L D + +R+VF+F+GG FIWPG+ IGH   V+ + K G + ++TLSM PLVF   +FL + E   I + +  H+ PS V+L D  K +P T+WRTSTTYF+PSS  P +Q ID+R  D  + P SHQE+VQVL+YE  Q+Y  H DYF+ + +QK P+ L+N++ G KNRMITVFW
Sbjct:  169 KQPYAFFTPDGVRLATKLGDLV-NRVVFLFEGGQFIWPGITIGHKTIVKDVYKKGDVVLETLSMTPLVFGVDEFLKDDEINVILELSLDHLNPSGVALNDAHKDRPATDWRTSTTYFLPSSRHPLVQDIDRRTADLVKVPVSHQEYVQVLRYEETQKYDHHLDYFSVENHQKSPQVLENIEYGFKNRMITVFW 360          
BLAST of mRNA_H-elongata_contig62010.13764.1 vs. uniprot
Match: A0A485KH06_9STRA (Aste57867_5968 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KH06_9STRA)

HSP 1 Score: 193 bits (490), Expect = 5.560e-56
Identity = 99/209 (47.37%), Postives = 135/209 (64.59%), Query Frame = 1
Query:   37 DDAGIDPP-------NKFPWAMYTPNGQRRLSSLKDAIASRLVFIFKGGNFIWPGVEIGHVQTVRSLQKLGSIEMKTLSMQPLVFEAKDFLLETECQHIKDKADPHMKPSPVSLMDHDKGKPDTNWRTSTTYFMPSSNDPTLQGIDQRVEDFTRTPRSHQEHVQVLKYETGQRYTAHHDYFNPKLYQKDPRTLKNMDGGRKNRMITVFW 642
            D AGI  P       ++ PWA +TP+GQR LS L    A  LV++ +GG FIWPG+ +G  + + +L  LG + M+TL+M PLVF   +FL + E   I D +  H+ PS V+L+D D+GKP T WRTSTTYF+ S     ++G+DQRVED T+  +SHQE VQVL+YE  Q+Y  H DYF  + +Q +P  ++ +  G KNRMITVFW
Sbjct:  160 DKAGIQVPEGKIAKKHQQPWAFFTPDGQR-LSQLSQLRAHPLVYVMEGGQFIWPGIHVGFKRVIPNLHGLGDVTMETLAMTPLVFAVDEFLKDDEIDVILDLSMDHLAPSGVTLVDGDEGKPATEWRTSTTYFLSSKRHALVRGLDQRVEDLTKVDQSHQEDVQVLRYEHTQKYDHHTDYFPVESHQNNPALVERLHHGFKNRMITVFW 367          
BLAST of mRNA_H-elongata_contig62010.13764.1 vs. uniprot
Match: A0A1V9YIB9_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIB9_9STRA)

HSP 1 Score: 192 bits (487), Expect = 5.580e-56
Identity = 102/217 (47.00%), Postives = 136/217 (62.67%), Query Frame = 1
Query:    4 LKVELTQRLKLDDAGIDPPNKFP--WAMYTPNGQR--RLSSLKDAIASRLVFIFKGGNFIWPGVEIGHVQTVRSLQKLGSIEMKTLSMQPLVFEAKDFLLETECQHIKDKADPHMKPSPVSLMDHDKGKPDTNWRTSTTYFMPSSNDPTLQGIDQRVEDFTRTPRSHQEHVQVLKYETGQRYTAHHDYFNPKLYQKDPRTLKNMDGGRKNRMITVFW 642
            L+  L ++L +     D   K+   WA ++P G R  +LSSL     + LV++F+GG FIWPG+ IGH +TV  L  LG + ++TL M PLVF  ++FL + E   I D +  H+ PS VS  D D+GK  T WRTSTTYF+PS     +QGIDQRVED  + P++HQE VQVL+YE  Q+Y  H DYF    YQ  P  ++++  G KNRMITVFW
Sbjct:  113 LRAALEEKLDIALPTTDLEKKYKQRWAFFSPEGDRLWQLSSLHK---TELVYVFEGGQFIWPGIRIGHKRTVPGLHGLGDVVLETLEMSPLVFAVEEFLRDDEIDVILDLSMEHLAPSGVSFQDGDEGKSATEWRTSTTYFLPSHRHALVQGIDQRVEDLVKVPKTHQEDVQVLRYEHTQKYDHHTDYFPVANYQNSPDLIESIHHGFKNRMITVFW 326          
BLAST of mRNA_H-elongata_contig62010.13764.1 vs. uniprot
Match: A0A6G0X6W4_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X6W4_9STRA)

HSP 1 Score: 193 bits (490), Expect = 7.100e-56
Identity = 98/195 (50.26%), Postives = 125/195 (64.10%), Query Frame = 1
Query:   64 KFPWAMYTPNGQR--RLSSLKDAIASRLVFIFKGGNFIWPGVEIGHVQTVRSLQKLGSIEMKTLSMQPLVFEAKDFLLETECQHIKDKADPHMKPSPVSLMDHDKGKPDTNWRTSTTYFMPSSNDPTLQGIDQRVEDFTRTPRSHQEHVQVLKYETGQRYTAHHDYFNPKLYQKDPRTLKNMDGGRKNRMITVFW 642
            K PW ++TP G+R   LS L+D I    V+  +GG FIWPG+ IGH + + +L  LGS+EM+TL M PLVF   +FL + E   I D +  H+ PS V+  D+D  KP T WRTSTTYF+PS   P L+ +DQRV D  +   SHQEHVQVL+YE  Q+Y AH DYF+     K P  +  +D G KNRMITVFW
Sbjct:  191 KQPWGLFTPTGERITSLSELQDPI----VYYMEGGQFIWPGIRIGHKRVIENLHGLGSVEMETLEMTPLVFAIDEFLHDDEIDLILDLSMDHLAPSGVTHNDNDVNKPATEWRTSTTYFLPSRGHPKLEALDQRVADLVKVDESHQEHVQVLRYELNQKYDAHLDYFSIDQLTKSPDVVAGLDHGYKNRMITVFW 381          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62010.13764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKF3_9PHAE3.530e-13082.71Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A4D9CPD2_9STRA9.240e-6452.04Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A7S2WGY1_9STRA9.380e-6248.79Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1V9ZLT6_9STRA3.000e-6148.84Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A067BMV5_SAPPC1.180e-5947.44Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
T0Q0B5_SAPDV1.380e-5646.51Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
K3WFC0_GLOUD2.340e-5649.74Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A485KH06_9STRA5.560e-5647.37Aste57867_5968 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9YIB9_9STRA5.580e-5647.00Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6G0X6W4_9STRA7.100e-5650.26Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62010contigH-elongata_contig62010:391..3144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.8
Seed ortholog evalue2.8e-98
Seed eggNOG ortholog2880.D8LI73
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
Ec32 ortholog descriptionprolyl 4-hydroxylase alpha-1 subunit precursor-like protein
Ec32 orthologEc-14_003410.1
EC1.14.11.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons6
Model size645
Cds size645
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62010.13764.1prot_H-elongata_contig62010.13764.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62010 391..3144 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931000.5951214-CDS-H-elongata_contig62010:390..4571622931000.5951214-CDS-H-elongata_contig62010:390..457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62010 391..457 -
1691679657.2042909-CDS-H-elongata_contig62010:390..4571691679657.2042909-CDS-H-elongata_contig62010:390..457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62010 391..457 -
1622931000.6094224-CDS-H-elongata_contig62010:839..8601622931000.6094224-CDS-H-elongata_contig62010:839..860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62010 840..860 -
1691679657.222626-CDS-H-elongata_contig62010:839..8601691679657.222626-CDS-H-elongata_contig62010:839..860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62010 840..860 -
1622931000.633323-CDS-H-elongata_contig62010:1445..16011622931000.633323-CDS-H-elongata_contig62010:1445..1601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62010 1446..1601 -
1691679657.2321537-CDS-H-elongata_contig62010:1445..16011691679657.2321537-CDS-H-elongata_contig62010:1445..1601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62010 1446..1601 -
1622931000.6536067-CDS-H-elongata_contig62010:1849..19841622931000.6536067-CDS-H-elongata_contig62010:1849..1984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62010 1850..1984 -
1691679657.2418916-CDS-H-elongata_contig62010:1849..19841691679657.2418916-CDS-H-elongata_contig62010:1849..1984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62010 1850..1984 -
1622931000.683205-CDS-H-elongata_contig62010:2615..27241622931000.683205-CDS-H-elongata_contig62010:2615..2724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62010 2616..2724 -
1691679657.251474-CDS-H-elongata_contig62010:2615..27241691679657.251474-CDS-H-elongata_contig62010:2615..2724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62010 2616..2724 -
1622931000.714014-CDS-H-elongata_contig62010:2987..31441622931000.714014-CDS-H-elongata_contig62010:2987..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62010 2988..3144 -
1691679657.2704453-CDS-H-elongata_contig62010:2987..31441691679657.2704453-CDS-H-elongata_contig62010:2987..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62010 2988..3144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62010.13764.1

>prot_H-elongata_contig62010.13764.1 ID=prot_H-elongata_contig62010.13764.1|Name=mRNA_H-elongata_contig62010.13764.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
VLKVELTQRLKLDDAGIDPPNKFPWAMYTPNGQRRLSSLKDAIASRLVFI
FKGGNFIWPGVEIGHVQTVRSLQKLGSIEMKTLSMQPLVFEAKDFLLETE
CQHIKDKADPHMKPSPVSLMDHDKGKPDTNWRTSTTYFMPSSNDPTLQGI
DQRVEDFTRTPRSHQEHVQVLKYETGQRYTAHHDYFNPKLYQKDPRTLKN
MDGGRKNRMITVFW*
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mRNA from alignment at H-elongata_contig62010:391..3144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62010.13764.1 ID=mRNA_H-elongata_contig62010.13764.1|Name=mRNA_H-elongata_contig62010.13764.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2754bp|location=Sequence derived from alignment at H-elongata_contig62010:391..3144- (Himanthalia elongata Himel1 dioecious)
GTTTTAAAGGTCGAGCTGACGCAGAGGCTGAAGCTGGACGACGCCGGGAT TGACCCCCCCAACAAGTTCCCTTGGGCCATGTACACCCCGAACGGACAGC GGAGGCTGTCGTCCCTGAAGGATGCCATCGCCAGCCGCTTGGTTTTCATA TTCAAGGGTGAATGAGAAGAAGGGGGCTCGAATGAGAAGTATTTTTAGTT CAAACAAGCGGGTCCGATTGAGCGTGGATGGATCCATCAGGCCATGGCGA GGGCGGTGGAGGAGGAGACGATCCAATAGTGGTGACTGCAGACAGCCATG TCTCAGATACTTCGAGGCATCATATACACGCTAATATGCGAAGCTCTTTC AGGGGAATATTGAGTCCATTTCCCGCGCATCCTCGTGTCGCCGACCCTTG TCACCGATATCGATCCTCAGGTGGCAACTTCATATGGCCCGGAGTGGAAA TCGGGCACGTGCAGACCGTACGAAGCCTCCAAAAGCTCGGATCGATCGAG ATGAAAACACTTTCCATGCAGCCGCTCGTGTAAGTACTGTTGGCTGGCAT CGACGGTAGCGCGTAGCATGAACCGAGATGCGGCTAGCTTGGATTTTTCA TGGAGAGATCCCTCTAGAGCGCGAACGCCCAGTTGCTTGGCTCGTGCCTC TACCCGACCCTCGTGGGCTGATGCGGTATGATAATTCCGTCCTTTTTCAT GTAGCTCTCTGTACCTCATATACCTTCCGTAGCATAACGTGGTCATTCCG TCTTATGCTTCGGCGCGTCTGAGTTTTGAGGTTATCGCGGTTCGAAACGC CGTACCCGCTGGCAGCCCCTTGTGAACACTCACCGAGTTCACGCTTTCGT GTAATCTTTACCGGCTCTCGCATGGCCCCACAAGTTCGGCGTAGGGGCAA GGTCTACGGAGCTACGTTCGCGGTCGCGACAACAAAGCGAAGAGCATCGG GCTTGTCTTTTGAAAAAATCCTCCAAAACGCCGTGGGGGTAACGGCGGTG AAAACACGCACGTACTACAACTACCGCCATGCTCGGTCGTATAGGAACGG CCGCGCGCGGCCAAAGCGCCGACCCCTAATAATATCCTCGTCGTGTACTG AGAAAATGTCCTTGTATGTCGCCCTTTCAAAAGCACGTCGTTGACGATGA TTTGCCTCAGGTTCGAGGCGAAGGACTTCTTGCTGGAGACCGAGTGCCAG CACATCAAGGACAAGGCCGACCCTCACATGAAACCGTCCCCAGTGTCCCT CATGGATCACGACAAGGGAAAACCCGACACCAACTGGAGAACAAGGTTGG ACACGCAACCATTGCTACAGGGTGTACGGTTTCTTCGGCGTAAGCGATCT CTTCCATGCGTCCACGGTTTTCCTCGACGCGCGCTCATCGATGGCGCTTA GCTTAACGCGCTAGAGGTTTTCCATCTATCCGATGTTTCCCCCCCCTAGG AAATTCTCCCTGTGAATGTATTTCTACCCACCTACTTGCCTTCCTCCATT TCCACAATGCTCGACGTGCGGAAACGACTCGCTGCGCCTTCAGCACGACG TACTTTATGCCCTCTAGCAACGACCCCACCCTCCAAGGCATCGACCAGAG GGTTGAGGATTTCACCCGAACTCCGCGGTCTCACCAGGAGCACGTGCAGG TCCTAAAGTACGAGACTGGGCAACGATACACTGCACACCACGACTACTTG TGAGTCGCGCGCCTCTGGCGTAACGCCGCTTCGCACGATGTGTTTGTTTC ACAGGCGGATAACGCCCCCCCCCCCCCAAAGCTGGCGCGAGTTGGTCATT GGAATGTAGCGGCCTTGGGGCAGCGATACGCACTCGTGGTCTTTTCGAGC GCCAGGCGATCAACGCCGAGGAATAAGTACATTTTGATTCCCGTCGCCGG CCGGTGCAGGGACCAAGGGTGGATTGACGTCGAGGCGAGCGATTAACCTG CGCCGTGAATGAGCGCGTTTTTTCGTGTGAATTTGCGCCTCTCCCGGCGC TGTCCCCCCAAGGACGACACATGGGACAATGATCGAATAACGAAAGCATG AAAAACTTGAGTACCCCCGTCCCCGTCCATGTATTCTCCCGACGTTTTGT CCTGACGGAAGAGATCACCGTTCTCTTCTATTTTTGGCCTTGGCTGATCT CGTCCTGTTCCCTTGACGCACACTTGCACCCTGCCGTGGCGCCTTCCGGG CGGTGTCACAAAATGGATTGGTTGGGTGGTGCTCTGGGATGCATCTTCGC GGCTCCCGCGGTGGCGGCGGTCGTTTATGGTCAGCAACCCCAAGCTATAT CAGAAGTGAGTGTCACGTGCGAGTCCCTTTGTTTACATCGATGCCGATGG CATCCAATGGTAAAGCTTCTACCGGAAATCGTGCAGTTGCGCGAGAGCGC GTGGAGGCTTCCCCCTCTCCCCCTCCAGTGATAATGATTCGAATTAATAT CGTAGGATTTCCTAGCCGGTGTGGCGTTTGTTCTCGCATATTAGTGTATG TTTGCTTTCAAGAATCTGTACATCTGCCGAAATATTCCACCTCTCGGGGC GCTGGCAAGCCCAGCATGTTGTCCAAAGTTTAAGGATCTTCTCAATTTGT TTATGGCATACCGACAGCGATAGCAGGGCGCGGGTCCCTTCCCCCGTGAC TCGGCGGGACTGCTGTGCGCGCGTGGTGATTTTTCAGGGACCCGAGGACG TTGAAGAATATGGACGGCGGCAGAAAAAATCGAATGATCACCGTTTTCTG GTAA
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Coding sequence (CDS) from alignment at H-elongata_contig62010:391..3144-

>mRNA_H-elongata_contig62010.13764.1 ID=mRNA_H-elongata_contig62010.13764.1|Name=mRNA_H-elongata_contig62010.13764.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1290bp|location=Sequence derived from alignment at H-elongata_contig62010:391..3144- (Himanthalia elongata Himel1 dioecious)
GTTTTAAAGGTCGAGCTGACGCAGAGGCTGAAGCTGGACGACGCCGGGAT
TGACCCCCCCAACAAGTTCCCTTGGGCCATGTACACCCCGAACGGACAGC
GGAGGCTGTCGTCCCTGAAGGATGCCATCGCCAGCCGCTTGGTTTTCATA
TTCAAGGGTTTTAAAGGTCGAGCTGACGCAGAGGCTGAAGCTGGACGACG
CCGGGATTGACCCCCCCAACAAGTTCCCTTGGGCCATGTACACCCCGAAC
GGACAGCGGAGGCTGTCGTCCCTGAAGGATGCCATCGCCAGCCGCTTGGT
TTTCATATTCAAGGGTGGCAACTTCATATGGCCCGGAGTGGAAATCGGGC
ACGTGCAGACCGTACGAAGCCTCCAAAAGCTCGGATCGATCGAGATGAAA
ACACTTTCCATGCAGCCGCTCGTGTGGCAACTTCATATGGCCCGGAGTGG
AAATCGGGCACGTGCAGACCGTACGAAGCCTCCAAAAGCTCGGATCGATC
GAGATGAAAACACTTTCCATGCAGCCGCTCGTGTTCGAGGCGAAGGACTT
CTTGCTGGAGACCGAGTGCCAGCACATCAAGGACAAGGCCGACCCTCACA
TGAAACCGTCCCCAGTGTCCCTCATGGATCACGACAAGGGAAAACCCGAC
ACCAACTGGAGAACAAGGTTCGAGGCGAAGGACTTCTTGCTGGAGACCGA
GTGCCAGCACATCAAGGACAAGGCCGACCCTCACATGAAACCGTCCCCAG
TGTCCCTCATGGATCACGACAAGGGAAAACCCGACACCAACTGGAGAACA
AGCACGACGTACTTTATGCCCTCTAGCAACGACCCCACCCTCCAAGGCAT
CGACCAGAGGGTTGAGGATTTCACCCGAACTCCGCGGTCTCACCAGGAGC
ACGTGCAGGTCCTAAAGTACGAGACTGGGCAACGATACACTGCACACCAC
GACTACTTCACGACGTACTTTATGCCCTCTAGCAACGACCCCACCCTCCA
AGGCATCGACCAGAGGGTTGAGGATTTCACCCGAACTCCGCGGTCTCACC
AGGAGCACGTGCAGGTCCTAAAGTACGAGACTGGGCAACGATACACTGCA
CACCACGACTACTTCAACCCCAAGCTATATCAGAACAACCCCAAGCTATA
TCAGAAGGACCCGAGGACGTTGAAGAATATGGACGGCGGCAGAAAAAATC
GAATGATCACCGTTTTCTGGTAAGGACCCGAGGACGTTGAAGAATATGGA
CGGCGGCAGAAAAAATCGAATGATCACCGTTTTCTGGTAA
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