mRNA_H-elongata_contig61979.13762.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61979.13762.1
Unique NamemRNA_H-elongata_contig61979.13762.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61979.13762.1 vs. uniprot
Match: D8LTI7_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTI7_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 3.380e-45
Identity = 82/104 (78.85%), Postives = 93/104 (89.42%), Query Frame = 1 
Query:   16 QEMFPYTRFAGTADAAVVDGYVSLGFAIKRGVVDPENGLEGPLLVLSTRTVSLDRLDLTVSNCRMAWLINLLTKLFASTISTYVCRALQQQLDAHASDLLGAIN 327
            QE FPYT   GTADA VVDGYVSLGF+IKRG+VD E G+EGPLLVLSTRTV+LDRL LTV+NCRMAWLINLLT+LF+STISTYVCR+LQ+Q+D HAS LLG +N
Sbjct:  942 QETFPYTYGNGTADATVVDGYVSLGFSIKRGIVDREKGIEGPLLVLSTRTVTLDRLGLTVANCRMAWLINLLTRLFSSTISTYVCRSLQEQVDGHASALLGTVN 1045
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BLAST of mRNA_H-elongata_contig61979.13762.1 vs. uniprot
Match: A0A835YIM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.020e-25
Identity = 54/100 (54.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:   16 QEMFPYTRFAGTADAAVVDGYVSLGFAIKRGVVDPENGLEGPLLVLSTRTVSLDRLDLTVSNCRMAWLINLLTKLFASTISTYVCRALQQQLDAHASDLL 315
            QE FPY    GTADA VV+G V +GF++KRG +    G+EGPLLV+S+RT++++ L ++V+N R+AWL+NLL  LF+ TI  YVCR+L+  LD +AS+LL
Sbjct:  918 QETFPYGSGTGTADAMVVNGSVRIGFSLKRGTL---GGVEGPLLVMSSRTITMEALTVSVANTRLAWLLNLLVSLFSETIKEYVCRSLKDTLDKNASELL 1014
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BLAST of mRNA_H-elongata_contig61979.13762.1 vs. uniprot
Match: A0A7S1R939_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R939_ALECA)

HSP 1 Score: 58.2 bits (139), Expect = 1.430e-7
Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 1 
Query:   16 QEMFPYTRFAGTADAAVVDGYVSLGFAIKRGVVDPENGLEG-PLLVLSTRTVSLDRLDLTVS------------NCRMAWLINLLTKLFASTISTYVCRALQQQLDAHASDLLGAIN 327
            Q  FP+   +G ADA      VS GF +  G   P +  EG P+LV+S+R VS++ L+L VS               +A +IN L+ LFA+ +  Y C+ +   LD H   L+GA+N
Sbjct:  390 QTGFPFIEGSGVADAKAERMRVSFGFKLAPG---PSS--EGRPVLVMSSRAVSMENLELWVSADKDAEIGQMVAQSSLAMIINPLSYLFANVLKDYACQKIASHLDNHLGSLVGALN 501
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BLAST of mRNA_H-elongata_contig61979.13762.1 vs. uniprot
Match: A0A813HX46_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HX46_POLGL)

HSP 1 Score: 57.4 bits (137), Expect = 2.770e-7
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 1 
Query:   16 QEMFPYTRFAGTADAAVVDGYVSLGFAIKRGVVDPENGLEGPLLVLSTRTVSLDRLDLTVSNCRMAWLINLLTKLFASTISTYVCRALQQQLDAHASDLLGAIN 327
            QE FP+      ADA      V   F +K GV    NG + P LV+S+R+V +D L+L V     A ++N L+ LFA  + +Y C+ +  QLD     L+ ++N
Sbjct:  922 QEFFPFLTADCIADAKAERMSVGFAFKLKPGV----NGKQ-PELVMSSRSVHMDHLELWVGETNYAVVVNALSFLFADVLKSYACQKIADQLDEQMEVLVASLN 1020
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61979.13762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LTI7_ECTSI3.380e-4578.85Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YIM8_9STRA3.020e-2554.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1R939_ALECA1.430e-735.90Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A813HX46_POLGL2.770e-735.58Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61979contigH-elongata_contig61979:67..1201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue4.5e-38
Seed eggNOG ortholog2880.D8LTI7
EggNOG OGs28JPJ@1,2QS2W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61979.13762.1prot_H-elongata_contig61979.13762.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61979 88..1201 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931000.2778966-UTR-H-elongata_contig61979:66..871622931000.2778966-UTR-H-elongata_contig61979:66..87Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61979 67..87 +
1691679657.044596-UTR-H-elongata_contig61979:66..871691679657.044596-UTR-H-elongata_contig61979:66..87Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61979 67..87 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931000.2894454-CDS-H-elongata_contig61979:87..2131622931000.2894454-CDS-H-elongata_contig61979:87..213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61979 88..213 +
1691679657.0612876-CDS-H-elongata_contig61979:87..2131691679657.0612876-CDS-H-elongata_contig61979:87..213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61979 88..213 +
1622931000.3032098-CDS-H-elongata_contig61979:1021..12011622931000.3032098-CDS-H-elongata_contig61979:1021..1201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61979 1022..1201 +
1691679657.073772-CDS-H-elongata_contig61979:1021..12011691679657.073772-CDS-H-elongata_contig61979:1021..1201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61979 1022..1201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61979.13762.1

>prot_H-elongata_contig61979.13762.1 ID=prot_H-elongata_contig61979.13762.1|Name=mRNA_H-elongata_contig61979.13762.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MFPYTRFAGTADAAVVDGYVSLGFAIKRGVVDPENGLEGPLLVLSTRTVS
LDRLDLTVSNCRMAWLINLLTKLFASTISTYVCRALQQQLDAHASDLLGA
IN
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mRNA from alignment at H-elongata_contig61979:67..1201+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61979.13762.1 ID=mRNA_H-elongata_contig61979.13762.1|Name=mRNA_H-elongata_contig61979.13762.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1135bp|location=Sequence derived from alignment at H-elongata_contig61979:67..1201+ (Himanthalia elongata Himel1 dioecious)
GATTTCGGCTTTGGCCAGGAAATGTTCCCGTACACCCGATTCGCGGGCAC
CGCTGACGCGGCGGTGGTCGACGGTTACGTCTCACTGGGGTTTGCCATCA
AGAGAGGCGTTGTCGATCCGGAGAACGGACTGGAGGGTCCTCTGCTGGTG
AGAGGATGGCGCATAAGTTCTGACATTTATTTTCCTCGCCCTAGGGCATT
GTTTAAGTTCGACGTTATGCGGTATGCGGAATGTTCGCTCGTACTTTCTT
TTAATTTTTTGCCAATAGGCTTTCAACATATGCCGCTGCCACTGCTACTG
CTAAGATTATTATTACCAACTCCACGCACTGCAACGTTGTCCATACTACC
ATAGCCTGTTGCCCTAAGGGGTCTTATTTACCTGCCATCTCTCTCTGGTT
CACGCAAACCAATTTTGATGAGAGCTACGGTATAAAATACATTTAAAGGT
ATATTTGCATTTATATGTTTTGATTTGTGCAACCACCTCTTGACAATGCG
ATATGTACCATGCGTTGAAGGAAGAACATGCGTTAGAAAATTCCACGAAA
CCCCTCTCCCGCTTCCCCCCGAGGGTGTGCTAGTTACCCGAAGCTCTGCC
GTTTGCGTTTTCTTGGCTACTTTGATCTAAAGCCATTTTACCCGTGTATA
TATTTATGGCCTCTAATACCGATTATATCATACGATATGTATAAAATATC
TACTAAATATGTTATTAGCATATTTAGTATCACGGCATGTTGGTGTTTTT
TGTTTGTTTTTTGTTACTAAGTTCCTCTGAAATATTTATTAATGTGGGTC
TTTAAATGGTTTGAGTAGACCCGTATATAAATATAACTTGGAGTTTATCC
CCCCCCCTCGCATATATCGACGGCTGCAACTGAGATGGCGGCGGCGTTGC
GTCAGTTGATTTTGATTTTGATTTTGGTTTTGTGTTTTTTTGCTCTTGTT
TTTAGGTCCTGTCGACGCGAACGGTCTCTCTGGACCGTTTGGACCTGACG
GTGTCCAACTGCCGCATGGCGTGGCTCATCAATCTCCTCACAAAGCTGTT
CGCGAGTACCATCAGCACCTACGTCTGCCGCGCCCTTCAGCAGCAGCTTG
ACGCTCACGCCTCCGACCTCTTGGGGGCTATCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig61979:67..1201+

>mRNA_H-elongata_contig61979.13762.1 ID=mRNA_H-elongata_contig61979.13762.1|Name=mRNA_H-elongata_contig61979.13762.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig61979:67..1201+ (Himanthalia elongata Himel1 dioecious)
ATGTTCCCGTACACCCGATTCGCGGGCACCGCTGACGCGGCGGTGGTCGA
CGGTTACGTCTCACTGGGGTTTGCCATCAAGAGAGGCGTTGTCGATCCGG
AGAACGGACTGGAGGGTCCTCTGCTGATGTTCCCGTACACCCGATTCGCG
GGCACCGCTGACGCGGCGGTGGTCGACGGTTACGTCTCACTGGGGTTTGC
CATCAAGAGAGGCGTTGTCGATCCGGAGAACGGACTGGAGGGTCCTCTGC
TGGTCCTGTCGACGCGAACGGTCTCTCTGGACCGTTTGGACCTGACGGTG
TCCAACTGCCGCATGGCGTGGCTCATCAATCTCCTCACAAAGCTGTTCGC
GAGTACCATCAGCACCTACGTCTGCCGCGCCCTTCAGCAGCAGCTTGACG
CTCACGCCTCCGACCTCTTGGGGGCTATCAACGTCCTGTCGACGCGAACG
GTCTCTCTGGACCGTTTGGACCTGACGGTGTCCAACTGCCGCATGGCGTG
GCTCATCAATCTCCTCACAAAGCTGTTCGCGAGTACCATCAGCACCTACG
TCTGCCGCGCCCTTCAGCAGCAGCTTGACGCTCACGCCTCCGACCTCTTG
GGGGCTATCAAC
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