mRNA_H-elongata_contig61720.13728.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61720.13728.1
Unique NamemRNA_H-elongata_contig61720.13728.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61720.13728.1 vs. uniprot
Match: D8LEE2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE2_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 9.430e-25
Identity = 52/88 (59.09%), Postives = 69/88 (78.41%), Query Frame = 2 
Query:    2 AAAEMLDDMRCAGIAIDESTLHLAATAFGRAGLWREGIILTRTAAEEGVPVSPSTATSVLGACAKEGRWEEALEVLDRARPALRESFS 265
            AAA +L++MR AGIA+DES  HLAATAFGRAGLWR+G+ +   AAE+G+ ++P+T TS+LGACAK+ RW EAL +L   RP L++  S
Sbjct:  753 AAAVLLEEMRDAGIAMDESAFHLAATAFGRAGLWRQGVRVAVVAAEQGIALAPTTLTSILGACAKQARWREALGLLQGTRPVLQQGLS 840
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61720.13728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEE2_ECTSI9.430e-2559.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61720contigH-elongata_contig61720:437..1125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1e-20
Seed eggNOG ortholog2880.D8LEE2
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61720.13728.1prot_H-elongata_contig61720.13728.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61720 437..1112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930995.627872-CDS-H-elongata_contig61720:436..6761622930995.627872-CDS-H-elongata_contig61720:436..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61720 437..676 -
1691679654.927159-CDS-H-elongata_contig61720:436..6761691679654.927159-CDS-H-elongata_contig61720:436..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61720 437..676 -
1622930995.644586-CDS-H-elongata_contig61720:1070..11121622930995.644586-CDS-H-elongata_contig61720:1070..1112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61720 1071..1112 -
1691679654.9381638-CDS-H-elongata_contig61720:1070..11121691679654.9381638-CDS-H-elongata_contig61720:1070..1112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61720 1071..1112 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930995.676943-UTR-H-elongata_contig61720:1112..11251622930995.676943-UTR-H-elongata_contig61720:1112..1125Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61720 1113..1125 -
1691679654.949205-UTR-H-elongata_contig61720:1112..11251691679654.949205-UTR-H-elongata_contig61720:1112..1125Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61720 1113..1125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61720.13728.1

>prot_H-elongata_contig61720.13728.1 ID=prot_H-elongata_contig61720.13728.1|Name=mRNA_H-elongata_contig61720.13728.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MLDDMRCAGIAIDESTLHLAATAFGRAGLWREGIILTRTAAEEGVPVSPS
TATSVLGACAKEGRWEEALEVLDRARPALRESFSREERLARDEG
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mRNA from alignment at H-elongata_contig61720:437..1125-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61720.13728.1 ID=mRNA_H-elongata_contig61720.13728.1|Name=mRNA_H-elongata_contig61720.13728.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=689bp|location=Sequence derived from alignment at H-elongata_contig61720:437..1125- (Himanthalia elongata Himel1 dioecious)
GGCGGCGGCGGAAATGCTGGATGATATGCGCTGCGCCGGGATCGCGATTG
ACGAAGTGCGTGTAGGTTGGAGGGTTTGTTGTTGACGAGGGGCGATCGAT
CCGGCCGTGAGAGAGTTTGCCATAATATCCCGATAGCTTTGCGCCGCCTT
CTTAACGTGAGTGTATCATATATTGTAGTTACCATGCCACGTGCATGTTG
AGTTCACGGTTACACGGGGCTGGTGAGAGTTTTTTTTAAAAAGCGACCAA
TCCGCCTCACGCGTCATTGAGATAATGGTTCGGTGGGGATTTTGATTGAT
TGAACGCGAGGATTATATCATTCCAAAACGGTAAAATTATGTTTCCAAAG
CGATGGCTTCGGAAAAAGATGCGAAGCGCCCAGGCGTGCCCTGGTATGAA
CTTTCGTCCCTACCCCCTTTTCCCTCCCGAACCAATATCCCTCGCACAGT
CGACGTTGCACCTGGCCGCGACCGCGTTCGGGCGCGCCGGGCTCTGGCGT
GAAGGAATTATCCTGACGAGGACGGCGGCCGAAGAAGGTGTACCGGTGTC
ACCGAGCACGGCTACGAGCGTCCTTGGGGCCTGCGCCAAGGAGGGCCGAT
GGGAAGAGGCGCTAGAGGTTCTAGACCGGGCCCGTCCAGCCTTGCGGGAG
TCCTTCTCGCGGGAGGAGCGCCTCGCGAGGGACGAGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig61720:437..1125-

>mRNA_H-elongata_contig61720.13728.1 ID=mRNA_H-elongata_contig61720.13728.1|Name=mRNA_H-elongata_contig61720.13728.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig61720:437..1125- (Himanthalia elongata Himel1 dioecious)
ATGCTGGATGATATGCGCTGCGCCGGGATCGCGATTGACGAAATGCTGGA
TGATATGCGCTGCGCCGGGATCGCGATTGACGAATCGACGTTGCACCTGG
CCGCGACCGCGTTCGGGCGCGCCGGGCTCTGGCGTGAAGGAATTATCCTG
ACGAGGACGGCGGCCGAAGAAGGTGTACCGGTGTCACCGAGCACGGCTAC
GAGCGTCCTTGGGGCCTGCGCCAAGGAGGGCCGATGGGAAGAGGCGCTAG
AGGTTCTAGACCGGGCCCGTCCAGCCTTGCGGGAGTCCTTCTCGCGGGAG
GAGCGCCTCGCGAGGGACGAGGGGTCGACGTTGCACCTGGCCGCGACCGC
GTTCGGGCGCGCCGGGCTCTGGCGTGAAGGAATTATCCTGACGAGGACGG
CGGCCGAAGAAGGTGTACCGGTGTCACCGAGCACGGCTACGAGCGTCCTT
GGGGCCTGCGCCAAGGAGGGCCGATGGGAAGAGGCGCTAGAGGTTCTAGA
CCGGGCCCGTCCAGCCTTGCGGGAGTCCTTCTCGCGGGAGGAGCGCCTCG
CGAGGGACGAGGGG
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