mRNA_H-elongata_contig61628.13714.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61628.13714.1
Unique NamemRNA_H-elongata_contig61628.13714.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61628.13714.1 vs. uniprot
Match: A0A2Z6S8A3_9GLOM (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6S8A3_9GLOM)

HSP 1 Score: 59.3 bits (142), Expect = 1.700e-7
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = -2 
Query:    3 LAEFEVSRFEGEKAVPTLSSTQQVLEWWIERRMVFPTLYRVACVYLAVPATSGSSERVFSDAGN 194
            + E E + F+     P  S      +WW   +  FP LY +AC YL +PATS SSER+FSDAGN
Sbjct:   68 IEENEDTEFDNYFRTPQASYDTNPFQWWQNNKDSFPVLYELACKYLYIPATSVSSERLFSDAGN 131
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BLAST of mRNA_H-elongata_contig61628.13714.1 vs. uniprot
Match: A0A8H3KUE5_9GLOM (Zinc finger BED domain-containing protein 1-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3KUE5_9GLOM)

HSP 1 Score: 59.3 bits (142), Expect = 9.410e-7
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = -2 
Query:    3 EVSRFEGEKAVPTLSSTQQVLEWWIERRMVFPTLYRVACVYLAVPATSGSSERVFSDAGN 182
            E++++      P  S    + +WWI+ R  FPTL++VA  YL + ATS SSER+FSDAGN
Sbjct:  276 ELTQYLDNFCTPQASPDTDIFKWWIDNREKFPTLFKVARKYLGILATSVSSERLFSDAGN 335
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BLAST of mRNA_H-elongata_contig61628.13714.1 vs. uniprot
Match: A0A843TLR5_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TLR5_COLES)

HSP 1 Score: 58.5 bits (140), Expect = 1.300e-6
Identity = 23/58 (39.66%), Postives = 39/58 (67.24%), Query Frame = -2 
Query:    6 VSRFEGEKAVPTLSSTQQVLEWWIERRMVFPTLYRVACVYLAVPATSGSSERVFSDAG 179
            + R+  E  VP    +  +L+WW +  +V+PTL+++AC YLA+PA++ +SE  FS+ G
Sbjct:  171 LERYLDESVVPLSQKSFDILKWWSDNSLVYPTLFKIACDYLAIPASTVASEAAFSNGG 228
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BLAST of mRNA_H-elongata_contig61628.13714.1 vs. uniprot
Match: UPI001C1A7F86 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1A7F86)

HSP 1 Score: 57.8 bits (138), Expect = 2.230e-6
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = -2 
Query:    3 TQQVLEWWIERRMVFPTLYRVACVYLAVPATSGSSERVFSDAGN 134
            +Q   EWW  ++  +P L+R+A +YLAVPA S SSER+FSDAGN
Sbjct:  199 SQDPFEWWANKKSKYPILFRLARIYLAVPAISTSSERLFSDAGN 242
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BLAST of mRNA_H-elongata_contig61628.13714.1 vs. uniprot
Match: A0A6J3C1N3_GALME (zinc finger BED domain-containing protein 1-like n=1 Tax=Galleria mellonella TaxID=7137 RepID=A0A6J3C1N3_GALME)

HSP 1 Score: 58.2 bits (139), Expect = 2.750e-6
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = -2 
Query:    6 PTLSSTQQVLEWWIERRMVFPTLYRVACVYLAVPATSGSSERVFSDAG 149
            P L   +  L++W ER+ +FP+LYR+AC YL +PATS  SER+FS AG
Sbjct:  423 PYLDRKKDPLQFWEERKHIFPSLYRMACKYLCIPATSVPSERLFSKAG 470
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BLAST of mRNA_H-elongata_contig61628.13714.1 vs. uniprot
Match: A0A015I000_RHIIW (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015I000_RHIIW)

HSP 1 Score: 56.2 bits (134), Expect = 3.150e-6
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = -2 
Query:    3 TQQVLEWWIERRMVFPTLYRVACVYLAVPATSGSSERVFSDAGN 134
            T+  L+WW  R  +FP L R+A  YLAVPATS SSE++FSDAGN
Sbjct:   97 TENPLDWWKLRLQMFPKLARIARKYLAVPATSVSSEQLFSDAGN 140
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BLAST of mRNA_H-elongata_contig61628.13714.1 vs. uniprot
Match: U9UUV1_RHIID (Uncharacterized protein (Fragment) n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9UUV1_RHIID)

HSP 1 Score: 52.8 bits (125), Expect = 4.740e-6
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = -2 
Query:    3 LEWWIERRMVFPTLYRVACVYLAVPATSGSSERVFSDAGN 122
            L WW  R  +FP L R++  YLAVPATS SSER+FSDAGN
Sbjct:    1 LIWWKLRLQMFPKLARISRKYLAVPATSVSSERLFSDAGN 40
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BLAST of mRNA_H-elongata_contig61628.13714.1 vs. uniprot
Match: U9TPQ3_RHIID (Uncharacterized protein (Fragment) n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9TPQ3_RHIID)

HSP 1 Score: 52.8 bits (125), Expect = 8.420e-6
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = -2 
Query:    3 LEWWIERRMVFPTLYRVACVYLAVPATSGSSERVFSDAGN 122
            L WW  R  +FP L ++A  YLAVPATS SSER+FSDAGN
Sbjct:    1 LIWWKLRLQMFPKLAKIAQKYLAVPATSVSSERLFSDAGN 40
[Close]
BLAST of mRNA_H-elongata_contig61628.13714.1 vs. uniprot
Match: A0A6J1SJC7_FRAOC (zinc finger BED domain-containing protein 1-like n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SJC7_FRAOC)

HSP 1 Score: 56.6 bits (135), Expect = 9.800e-6
Identity = 30/51 (58.82%), Postives = 34/51 (66.67%), Query Frame = -2 
Query:    3 AVPTLSSTQQVLEWWIERRMVFPTLYRVACVYLAVPATSGSSERVFSDAGN 155
            A P +S  Q  L WW  R+  +PTL R+A  YLAVPATS SSER FS AGN
Sbjct:  557 AEPQISHNQCPLTWWKTRQKRYPTLARLARRYLAVPATSASSERDFSTAGN 607
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BLAST of mRNA_H-elongata_contig61628.13714.1 vs. uniprot
Match: UPI0009B2EA1E (zinc finger BED domain-containing protein 1-like n=1 Tax=Monopterus albus TaxID=43700 RepID=UPI0009B2EA1E)

HSP 1 Score: 53.5 bits (127), Expect = 1.070e-5
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = -2 
Query:    3 TLSSTQQVLEWWIERRMVFPTLYRVACVYLAVPATSGSSERVFSDAGN 146
            TL + +  L+WW E + ++P L  +A  YL +PATS SSERVFS  GN
Sbjct:   54 TLDAEEDPLKWWKESQRIYPRLSNLARKYLCIPATSSSSERVFSTGGN 101
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61628.13714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z6S8A3_9GLOM1.700e-745.31Dimer_Tnp_hAT domain-containing protein n=3 Tax=Rh... [more]
A0A8H3KUE5_9GLOM9.410e-746.67Zinc finger BED domain-containing protein 1-like n... [more]
A0A843TLR5_COLES1.300e-639.66Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
UPI001C1A7F862.230e-656.82Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A6J3C1N3_GALME2.750e-654.17zinc finger BED domain-containing protein 1-like n... [more]
A0A015I000_RHIIW3.150e-661.36Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rh... [more]
U9UUV1_RHIID4.740e-665.00Uncharacterized protein (Fragment) n=1 Tax=Rhizoph... [more]
U9TPQ3_RHIID8.420e-665.00Uncharacterized protein (Fragment) n=1 Tax=Rhizoph... [more]
A0A6J1SJC7_FRAOC9.800e-658.82zinc finger BED domain-containing protein 1-like n... [more]
UPI0009B2EA1E1.070e-550.00zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61628contigH-elongata_contig61628:119..805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size688
Cds size687
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930994.1469042-CDS-H-elongata_contig61628:118..8051622930994.1469042-CDS-H-elongata_contig61628:118..805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61628 119..805 +
1691679654.356944-CDS-H-elongata_contig61628:118..8051691679654.356944-CDS-H-elongata_contig61628:118..805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61628 119..805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61628.13714.1prot_H-elongata_contig61628.13714.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61628 119..805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61628.13714.1

>prot_H-elongata_contig61628.13714.1 ID=prot_H-elongata_contig61628.13714.1|Name=mRNA_H-elongata_contig61628.13714.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
MLPASENTRSEDPDVAGTARYTHATLYSVGKTIRRSIHHSKTCCVELNVG
TAFSPSKRETSNSASDLLVTAAAASSSDAPVGPSLEASAVRIDAFIITAS
TRAPSPRGSTVASELLLPVPTACVDAEATVASALVSFPSALSAASRVAMS
NVASTTRRRKAAFSQVSVHDRCFDRGSRKAAILEASVDSSKRSPKLLNIS
IVAPRMWSGRSAVALSMMKTWSMLESMGI
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mRNA from alignment at H-elongata_contig61628:119..805+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61628.13714.1 ID=mRNA_H-elongata_contig61628.13714.1|Name=mRNA_H-elongata_contig61628.13714.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=687bp|location=Sequence derived from alignment at H-elongata_contig61628:119..805+ (Himanthalia elongata Himel1 dioecious)
ATGTTGCCTGCATCAGAGAACACGCGCTCCGAGGACCCAGACGTTGCCGG
CACTGCCAGGTACACACACGCGACCCTGTACAGCGTGGGGAAAACCATCC
GACGCTCGATCCACCACTCCAAAACCTGCTGCGTAGAGCTTAACGTCGGA
ACCGCCTTCTCCCCCTCGAAACGCGAAACCTCGAACTCAGCCAGCGACCT
CCTCGTCACGGCCGCGGCAGCGTCGTCCTCCGACGCGCCCGTAGGCCCCT
CGTTAGAGGCATCGGCCGTGAGAATCGATGCGTTCATCATCACGGCGAGT
ACTAGGGCACCCTCTCCAAGAGGTTCCACGGTCGCGTCGGAGCTCCTGCT
GCCCGTGCCCACCGCCTGTGTGGATGCAGAAGCCACGGTCGCGTCGGCAC
TCGTCTCCTTCCCATCCGCCCTTTCCGCTGCCTCACGGGTTGCCATGTCG
AACGTAGCTTCCACGACCAGGCGACGAAAAGCCGCCTTTTCGCAGGTGTC
GGTCCATGACAGGTGCTTCGACCGCGGGTCGAGGAAGGCCGCGATCTTGG
AGGCGTCCGTGGATTCCTCGAAGCGGTCTCCGAAGCTGTTGAACATCTCC
ATCGTAGCGCCCAGGATGTGGTCGGGCAGGTCCGCCGTGGCTTTGTCCAT
GATGAAGACATGGAGCATGCTCGAGAGCATGGGCATC
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Coding sequence (CDS) from alignment at H-elongata_contig61628:119..805+

>mRNA_H-elongata_contig61628.13714.1 ID=mRNA_H-elongata_contig61628.13714.1|Name=mRNA_H-elongata_contig61628.13714.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig61628:119..805+ (Himanthalia elongata Himel1 dioecious)
ATGTTGCCTGCATCAGAGAACACGCGCTCCGAGGACCCAGACGTTGCCGG
CACTGCCAGGTACACACACGCGACCCTGTACAGCGTGGGGAAAACCATCC
GACGCTCGATCCACCACTCCAAAACCTGCTGCGTAGAGCTTAACGTCGGA
ACCGCCTTCTCCCCCTCGAAACGCGAAACCTCGAACTCAGCCAGCGACCT
CCTCGTCACGGCCGCGGCAGCGTCGTCCTCCGACGCGCCCGTAGGCCCCT
CGTTAGAGGCATCGGCCGTGAGAATCGATGCGTTCATCATCACGGCGAGT
ACTAGGGCACCCTCTCCAAGAGGTTCCACGGTCGCGTCGGAGCTCCTGCT
GCCCGTGCCCACCGCCTGTGTGGATGCAGAAGCCACGGTCGCGTCGGCAC
TCGTCTCCTTCCCATCCGCCCTTTCCGCTGCCTCACGGGTTGCCATGTCG
AACGTAGCTTCCACGACCAGGCGACGAAAAGCCGCCTTTTCGCAGGTGTC
GGTCCATGACAGGTGCTTCGACCGCGGGTCGAGGAAGGCCGCGATCTTGG
AGGCGTCCGTGGATTCCTCGAAGCGGTCTCCGAAGCTGTTGAACATCTCC
ATCGTAGCGCCCAGGATGTGGTCGGGCAGGTCCGCCGTGGCTTTGTCCAT
GATGAAGACATGGAGCATGCTCGAGAGCATGGGCATCATGTTGCCTGCAT
CAGAGAACACGCGCTCCGAGGACCCAGACGTTGCCGGCACTGCCAGGTAC
ACACACGCGACCCTGTACAGCGTGGGGAAAACCATCCGACGCTCGATCCA
CCACTCCAAAACCTGCTGCGTAGAGCTTAACGTCGGAACCGCCTTCTCCC
CCTCGAAACGCGAAACCTCGAACTCAGCCAGCGACCTCCTCGTCACGGCC
GCGGCAGCGTCGTCCTCCGACGCGCCCGTAGGCCCCTCGTTAGAGGCATC
GGCCGTGAGAATCGATGCGTTCATCATCACGGCGAGTACTAGGGCACCCT
CTCCAAGAGGTTCCACGGTCGCGTCGGAGCTCCTGCTGCCCGTGCCCACC
GCCTGTGTGGATGCAGAAGCCACGGTCGCGTCGGCACTCGTCTCCTTCCC
ATCCGCCCTTTCCGCTGCCTCACGGGTTGCCATGTCGAACGTAGCTTCCA
CGACCAGGCGACGAAAAGCCGCCTTTTCGCAGGTGTCGGTCCATGACAGG
TGCTTCGACCGCGGGTCGAGGAAGGCCGCGATCTTGGAGGCGTCCGTGGA
TTCCTCGAAGCGGTCTCCGAAGCTGTTGAACATCTCCATCGTAGCGCCCA
GGATGTGGTCGGGCAGGTCCGCCGTGGCTTTGTCCATGATGAAGACATGG
AGCATGCTCGAGAGCATGGGCATC
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