mRNA_H-elongata_contig61585.13709.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61585.13709.1
Unique NamemRNA_H-elongata_contig61585.13709.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61585.13709.1 vs. uniprot
Match: A0A6H5KBT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.110e-20
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:  112 EWEHLDAFQAMGSMFQQELYHEKMSGFVEVLGDKTKVPLLIILVGVMAALVGMTISYCSSTAR 300
            +WEHLDAFQAMGSMFQQELYHEK SG V+VL D+ +VPLLIILVG++AAL GM +S  S+ AR
Sbjct:  132 DWEHLDAFQAMGSMFQQELYHEKSSGLVDVLVDRMRVPLLIILVGILAALAGMFVSLLSAWAR 194
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BLAST of mRNA_H-elongata_contig61585.13709.1 vs. uniprot
Match: D8LJI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI9_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.680e-10
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:  112 EWEHLDAFQAMGSMFQQELYHEKMSGFVEVLGDKTKV 222
            EWEHLDAFQAMGSMFQQELYHEK SG V+VL D+ +V
Sbjct:  132 EWEHLDAFQAMGSMFQQELYHEKSSGLVDVLVDRMRV 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61585.13709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBT0_9PHAE6.110e-2073.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJI9_ECTSI1.680e-1081.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61585contigH-elongata_contig61585:1534..2980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size302
Cds size300
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61585.13709.1prot_H-elongata_contig61585.13709.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61585 1534..2980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930993.367906-CDS-H-elongata_contig61585:1533..16141622930993.367906-CDS-H-elongata_contig61585:1533..1614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61585 1534..1614 -
1691679654.1120372-CDS-H-elongata_contig61585:1533..16141691679654.1120372-CDS-H-elongata_contig61585:1533..1614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61585 1534..1614 -
1622930993.3939893-CDS-H-elongata_contig61585:2364..24451622930993.3939893-CDS-H-elongata_contig61585:2364..2445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61585 2365..2445 -
1691679654.1225019-CDS-H-elongata_contig61585:2364..24451691679654.1225019-CDS-H-elongata_contig61585:2364..2445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61585 2365..2445 -
1622930993.4084377-CDS-H-elongata_contig61585:2842..29801622930993.4084377-CDS-H-elongata_contig61585:2842..2980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61585 2843..2980 -
1691679654.1326432-CDS-H-elongata_contig61585:2842..29801691679654.1326432-CDS-H-elongata_contig61585:2842..2980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61585 2843..2980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61585.13709.1

>prot_H-elongata_contig61585.13709.1 ID=prot_H-elongata_contig61585.13709.1|Name=mRNA_H-elongata_contig61585.13709.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
WNEPGVKKYAGEGEAYGGHDRGSEGHGEKKDPPPQPVEWEHLDAFQAMGS
MFQQELYHEKMSGFVEVLGDKTKVPLLIILVGVMAALVGMTISYCSSTAR
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mRNA from alignment at H-elongata_contig61585:1534..2980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61585.13709.1 ID=mRNA_H-elongata_contig61585.13709.1|Name=mRNA_H-elongata_contig61585.13709.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1447bp|location=Sequence derived from alignment at H-elongata_contig61585:1534..2980- (Himanthalia elongata Himel1 dioecious)
TGGAACGAGCCCGGGGTAAAGAAGTACGCGGGAGAAGGAGAGGCGTATGG
GGGCCATGATAGGGGTTCTGAGGGGCACGGGGAGAAAAAAGACCCGCCAC
CCCAGCCGGTGGAATGGGAGCACTTGGACGCCTTCCAGGTTTGTCGGGGG
TTTCAACGGAGGGAAGGGGAGGGGGGGGGGGAAGGATAGGCAAGGGAAAT
ATATACGGTATATATTTCCCAAATAGTACCATGTGTGTGTGTGTGTGTGT
GTTTGTCGAGGATTTTGTTTTTCCCTTCCTGAACGTTTTTTGGGGTTTTC
AGTCCCCCGTAATTAATAGCGTGAAGTTTAACACTTTAAAAATAAATAAA
TAAAAGCAATACGTGGTAACGTACGGTCGATGGTGCGACGTCCTGGGACG
AGGGCGAGTGGATCATGTCATGGATCTTCCGCATGTTGTGTTATACGCAC
CTTGTTCTTGGCGCCTCTTCCCTCTTTCCTCTTCCTTTTTCATTCCCTTT
ATCATAAATTATTTATCTTTTACCTTCTCTAAAAGGCGATGGGATCCATG
TTCCAGCAAGAGCTTTACCACGAAAAAATGAGCGGCTTCGTGGAAGTCCT
TGGTGACAAAACAAAGGTGAATTTTCCTCTCGATTGAATTGGGGTTTGCA
TGTTATGTCTTTAGGCGTTATTGTTTTCATTTTATTTTTTTTGGTCGGCA
TTTCCCCCCCATCACCCTGACGCCACCACTTGAAAATAGTGCAAATTGTA
TGCTAAGTATGTAAAACAAGTATATATACCGTTTACACCCTTATCCCTTG
TCATTCTCAGAGCTGCTAAAGAGCCGCGTTAGTCGGTAGTTTTTTTTTAG
CTGTGCTTTTCCATCGGTGGTGCTACGCTCGACTGTTCATTGTGGGCCTT
CTTGGGGGTAAACATTATTGTGATAAGGCTATTGATAGGGTCGTGTACGC
TTAGACTCGACTCGGGGCCTAGACTGGACAAACTGTCACGTCTTTGGGTG
TGCGATGTGTGCGGAGGGGAAATTCGGTGGAGGAAGAAGGGGGGCAACCG
CCAACAGCTGCTTAATCGTTCCCCCCCCCCCTCGCCGAGGAATGCTGCTA
ATTACTGGTACTAATTATAGAGCTGTGGTATTAATATAGTTTTTTTGTAT
CGAGCGCGGCTGTTTTGGGTTTTGTATCTCAATGGATGTTTTCTTGTGCC
TTTCTCGTAACTTTCTCGCTCTTAGCTTTTATTTCCACATTAAATTTATC
TGGTTCTCCGAACGACGACGCGGGGATCGGACTAACCCCCCCCCCCCTCC
CGCCTCCGCTGTCTGTGTCTGTCTGATTATCTCTGTCGTATGTATGTACC
GGGTGTCGTTTAAAAGGTGCCGCTGTTGATTATTCTGGTTGGCGTGATGG
CGGCTCTCGTCGGTATGACGATCAGTTACTGCTCCAGCACAGCGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig61585:1534..2980-

>mRNA_H-elongata_contig61585.13709.1 ID=mRNA_H-elongata_contig61585.13709.1|Name=mRNA_H-elongata_contig61585.13709.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig61585:1534..2980- (Himanthalia elongata Himel1 dioecious)
TGGAACGAGCCCGGGGTAAAGAAGTACGCGGGAGAAGGAGAGGCGTATGG
GGGCCATGATAGGGGTTCTGAGGGGCACGGGGAGAAAAAAGACCCGCCAC
CCCAGCCGGTGGAATGGGAGCACTTGGACGCCTTCCAGTGGAACGAGCCC
GGGGTAAAGAAGTACGCGGGAGAAGGAGAGGCGTATGGGGGCCATGATAG
GGGTTCTGAGGGGCACGGGGAGAAAAAAGACCCGCCACCCCAGCCGGTGG
AATGGGAGCACTTGGACGCCTTCCAGGCGATGGGATCCATGTTCCAGCAA
GAGCTTTACCACGAAAAAATGAGCGGCTTCGTGGAAGTCCTTGGTGACAA
AACAAAGGCGATGGGATCCATGTTCCAGCAAGAGCTTTACCACGAAAAAA
TGAGCGGCTTCGTGGAAGTCCTTGGTGACAAAACAAAGGTGCCGCTGTTG
ATTATTCTGGTTGGCGTGATGGCGGCTCTCGTCGGTATGACGATCAGTTA
CTGCTCCAGCACAGCGAGGGTGCCGCTGTTGATTATTCTGGTTGGCGTGA
TGGCGGCTCTCGTCGGTATGACGATCAGTTACTGCTCCAGCACAGCGAGG
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