prot_H-elongata_contig61413.13696.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61413.13696.1
Unique Nameprot_H-elongata_contig61413.13696.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length399
Homology
BLAST of mRNA_H-elongata_contig61413.13696.1 vs. uniprot
Match: D7G7R3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7R3_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 7.060e-49
Identity = 109/230 (47.39%), Postives = 137/230 (59.57%), Query Frame = 0
Query:  153 VIEALCNAICGLCSELLLDARVLPCSHSFCELCWAAHVDEKGTTCPVCRRKFHSSERNPRRCFSLDLLIASLVDKLASPKERARWKARQEHVHKPMATGTVTA---AASEAPVPSSTTIEEPLSSRGTPNAPITCDSPLKNAQRTAAAGSVRRL-PPYPGNKEVAAGGATLGPRTRSNGRAGGQSSTSKALDGAVAAPAVALVKCEGCNEAGHDLRECPHRSESAVEASE 378
            V+E L +A+CGLCSELLLDA VLPCSHSFC LCWA HV+EKGTTCPVC RK HSSER PRRC +LDLLI S++ KLA P+ERARW ARQE   K  A     A    ++  P    T     + S    + P    SP +  + T +  +   + PP   ++     G     R   +G AGG +++S A          A  +CEGC+E GH+ RECPHRS+SA+E SE
Sbjct:  219 VMEVLRDAMCGLCSELLLDAAVLPCSHSFCRLCWAEHVEEKGTTCPVCLRKMHSSERTPRRCSNLDLLITSIIHKLAGPEERARWTARQEEAQKRAAVAARKARQQGSNNGPAAPGTRKAGQVPSSAAESKP----SPARGVRSTGSKSNNNGVFPPERSSRGDGNQGGGSTKRLAPSGIAGGGANSSVA----------AAARCEGCDEEGHEFRECPHRSDSALEGSE 434          
BLAST of mRNA_H-elongata_contig61413.13696.1 vs. uniprot
Match: A0A6H5KYS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS2_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.230e-47
Identity = 112/234 (47.86%), Postives = 138/234 (58.97%), Query Frame = 0
Query:  153 VIEALCNAICGLCSELLLDARVLPCSHSFCELCWAAHVDEKGTTCPVCRRKFHSSERNPRRCFSLDLLIASLVDKLASPKERARWKARQEHVHKPMATGTVTAAASEAPVPSSTTIEEPLSSRGTPNAPITC----DSPLKNAQRTAAAGSVRRLPPYPGNKEVAAGGATLG----PRTRSNGRAGGQSSTSKALDGAVAAPAVALVKCEGCNEAGHDLRECPHRSESAVEASE 378
            V+E L +A+CGLCSELLLDA VLPCSHSFC LCWA HV+EKGTTCPVC RK HSSER PRRC +LDLLI S++ KLA P+ERARW ARQE   K       TAAA +A    S        +R     P +      SP +  + T +  +   + P  G      G   LG     R   +G A G  +++      VAAP     +CEGC+E GH+ RECPHRS+SA++ SE
Sbjct:  229 VMEVLRDAMCGLCSELLLDAAVLPCSHSFCRLCWAGHVEEKGTTCPVCLRKMHSSERTPRRCSNLDLLITSIIHKLAGPQERARWTARQEEALK-----RATAAARKARQQGSNNGPAAAGTRKAGQVPSSAAESKPSPARGVRSTGSKSNNNGVFPPEGTSR---GDGNLGGTGIKRLAPSGTADGNGNST------VAAP----ERCEGCDEEGHEFRECPHRSDSALDESE 444          
BLAST of mRNA_H-elongata_contig61413.13696.1 vs. uniprot
Match: A0A836C894_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C894_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.300e-20
Identity = 84/240 (35.00%), Postives = 109/240 (45.42%), Query Frame = 0
Query:  155 EALCNAICGLCSELLLDARVLPCSHSFCELCWAAHVDEKGTTCPVCRRKFHSSERNPRRCFSLDLLIASLVDKLASPKERARWKARQEHVHKPMATGTVTAA-------------ASEAPVPSSTTIEEPLSS-RGTPNAPITCDSPLKNAQRTAAAGSVRRLPPYPGNKEVAAGGATLGPRTRSNGRAGGQSSTSKALDGAVAAPAVALVKCEGCNEAGHDLRECPHRSESAVEASEDE 380
            + L    C LC E LLDA +LPCSH+ C  CW AH D   T CPVC RKFHS+ER  RR   LD +IA LV +L   + + R + R +                            S A     + I  P SS RG     +   SP+ + +++ +    R LP  P N       A      RS G AGG S   +A+             CEGCNE GHD+  CPHRS+ A + S++E
Sbjct:  342 QLLAEVACCLCEETLLDAALLPCSHAVCGACWTAHCDAHSTACPVCTRKFHSAERRARRSMHLDNVIALLVAELGGAEAQRRMEERAQAAXXXXXXXXXXXXXXXXXXXXXXXXPTSPAXXXXXSRISPPGSSGRGADAGKL---SPVGSGRKSLSQQQQRLLPVAPLNAFTRKRAALA----RSAG-AGGDSQPREAV-------------CEGCNEPGHDMSCCPHRSDDAFKESDEE 560          
BLAST of mRNA_H-elongata_contig61413.13696.1 vs. uniprot
Match: A0A8C5HMD3_9TELE (E3 ubiquitin-protein ligase RNF8 n=2 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5HMD3_9TELE)

HSP 1 Score: 57.8 bits (138), Expect = 1.850e-5
Identity = 35/81 (43.21%), Postives = 45/81 (55.56%), Query Frame = 0
Query:  153 VIEALCNAI-CGLCSELLLDARVLPCSHSFCELC---WAAHVDEKGTTCPVCRRKFHSSERNPRRCFSLDLLIASLVDKLA 229
            V E L N + C +CSELL++A  L CSHSFC+ C   W    DE    CP+CR+   S  R    C +LD  I  +VD L+
Sbjct:  351 VTEVLENELQCIICSELLIEAVTLGCSHSFCKYCIQQWRKKKDE----CPICRQAIQSQTR----CLALDNCIDGMVDNLS 423          
BLAST of mRNA_H-elongata_contig61413.13696.1 vs. uniprot
Match: UPI0016538A32 (E3 ubiquitin-protein ligase rnf168-like n=1 Tax=Sander lucioperca TaxID=283035 RepID=UPI0016538A32)

HSP 1 Score: 53.1 bits (126), Expect = 3.320e-5
Identity = 22/59 (37.29%), Postives = 36/59 (61.02%), Query Frame = 0
Query:  159 NAICGLCSELLLDARVLPCSHSFCELCWAAHVDEKGTTCPVCRRKFHSSERNPRRCFSL 217
            + +C +C E+ ++   LPC+HSFC++C+   VD+    CP+CR++  S  R   R  SL
Sbjct:   20 DCLCPVCLEIFMEPVTLPCTHSFCKVCFLESVDKATLCCPLCRKRVSSWARLHSRTNSL 78          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61413.13696.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G7R3_ECTSI7.060e-4947.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYS2_9PHAE1.230e-4747.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C894_9STRA3.300e-2035.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8C5HMD3_9TELE1.850e-543.21E3 ubiquitin-protein ligase RNF8 n=2 Tax=Gouania w... [more]
UPI0016538A323.320e-537.29E3 ubiquitin-protein ligase rnf168-like n=1 Tax=Sa... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 162..200
e-value: 9.9E-5
score: 31.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 162..201
score: 11.604
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 161..205
e-value: 3.5E-7
score: 30.0
NoneNo IPR availablePANTHERPTHR25462FAMILY NOT NAMEDcoord: 159..369
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 156..207
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 148..253
e-value: 8.6E-15
score: 56.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61413contigH-elongata_contig61413:1315..3318 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61413.13696.1mRNA_H-elongata_contig61413.13696.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61413 417..3364 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61413.13696.1 ID=prot_H-elongata_contig61413.13696.1|Name=mRNA_H-elongata_contig61413.13696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=399bp
MLTRRKRGGGAKIENTPVVENFAGKEESKAGVGKPKAKGRKRLGRTIKGD
APVVVNSGSLEAEEGGTLKTGAGIKLRDTGHKRGGEACNGDALGVENSAP
VGAEGGGASEAGGGIEKKVSGRKRMVETKNEDASVVVISESVGVEGSGVS
EQVIEALCNAICGLCSELLLDARVLPCSHSFCELCWAAHVDEKGTTCPVC
RRKFHSSERNPRRCFSLDLLIASLVDKLASPKERARWKARQEHVHKPMAT
GTVTAAASEAPVPSSTTIEEPLSSRGTPNAPITCDSPLKNAQRTAAAGSV
RRLPPYPGNKEVAAGGATLGPRTRSNGRAGGQSSTSKALDGAVAAPAVAL
VKCEGCNEAGHDLRECPHRSESAVEASEDEDEEEEISDGEMYEDDADD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD