mRNA_H-elongata_contig6115.13662.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6115.13662.1
Unique NamemRNA_H-elongata_contig6115.13662.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6115.13662.1 vs. uniprot
Match: A0A6H5JZV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZV9_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.280e-24
Identity = 86/257 (33.46%), Postives = 137/257 (53.31%), Query Frame = 2 
Query:    5 CRGLLFYGGLQKTLGQEPRCFGYKLILP-NVQVTEEGGVPPPPEKAKFIFISIGVSVYNREMLLGNQLPLVNGISQLIISEEVSSQGNLPRRDVRERQPHDQPHEYPQGVMASDNLASGAFPGGRQRR----HSVADGNGNDNGVRDRVSVP----RRRQHSPEEVEEMRTKEREEATKEAQQKIEELLATAGTRVRRHCKISV----DLALATPGKMPQAASAQASKAKEMPVMMMNTAKKGLDLGALAVRSISDQ 736
            C+G+L Y G Q+ +GQEP+C G+K  LP N+ +            AKF FI +GVSVYN+EML  N+LPLVNG SQL++S+E             ER   D  H    G +     A+ A   GR  R    H+ A+ +    G R   +VP    +R   + + VEE  +      +   ++++E L++ A  R+R+  +I++    +L   TPGK+ +A   QA+K +EMP ++++T+K+ +D G   VR+  ++
Sbjct:   20 CKGILAYAGQQRAVGQEPQCLGFKTALPPNIIIXXXXXXXXXXXXAKFFFIGVGVSVYNKEMLSNNRLPLVNGFSQLVVSKE------------EERDKTDALHN---GRIGEYEAAAAARHHGRGNRQPQPHTAAEASAQ--GGRQGAAVPTTLSQRSGVAGDGVEERSS------STTGRKQVEALMSYAVGRIRKQVEITMQVTDELKKLTPGKLREATVVQANKVQEMPTLLLDTSKRMVDSGTKFVRNYLEE 253
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BLAST of mRNA_H-elongata_contig6115.13662.1 vs. uniprot
Match: D8LTV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV3_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 4.250e-9
Identity = 65/211 (30.81%), Postives = 103/211 (48.82%), Query Frame = 2 
Query:  158 IGVSVYNREMLLGNQLPLVNGISQLIISEEVSSQGNLPRRDVRERQPHD---------QPHEYPQGVMASDNLASG-----AFPGGRQRRHSVADGNGNDNGVRDRVSVPRRRQHSPEEVEEMRTKEREEATKEAQQKIEELLATAGTRVRRHCKISV----DLALATPGKMPQAASAQASKAKEMPVMMMNTAKKGLDLGALAVRSISDQ 736
            +GVSVYN+EML  N+LPLVNG SQL++S+E        R + R+ + H+         + H  PQ   A++  A G     A P    +R  VA G+G + G     S   R+Q                        +E L+A A  R+R+   I++    +L   TP K+ +A   QA+K +EMP ++++T+K+ +D G   VR+  ++
Sbjct:    1 MGVSVYNKEMLSNNRLPLVNGFSQLLVSKEEEKDKADARHNGRKGE-HEADXXXXXXXRGHLQPQPHAAAEAPAQGGRQGAAVPTTLSQRSGVA-GDGVEEGS---SSTTGRKQ------------------------VEALMAYAVGRIRKQVDITIQVTDELKKLTPEKVREATVVQANKVQEMPTLLLDTSKRMVDSGTKFVRNYLEE 182
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6115.13662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZV9_9PHAE2.280e-2433.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTV3_ECTSI4.250e-930.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6115contigH-elongata_contig6115:1418..3915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002620.1
Exons2
Model size2029
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6115.13662.1prot_H-elongata_contig6115.13662.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6115 2071..2652 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930986.939931-UTR-H-elongata_contig6115:1417..15331622930986.939931-UTR-H-elongata_contig6115:1417..1533Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6115 1418..1533 +
1691679651.7957888-UTR-H-elongata_contig6115:1417..15331691679651.7957888-UTR-H-elongata_contig6115:1417..1533Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6115 1418..1533 +
1622930986.9631999-UTR-H-elongata_contig6115:2002..20701622930986.9631999-UTR-H-elongata_contig6115:2002..2070Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6115 2003..2070 +
1691679651.8038673-UTR-H-elongata_contig6115:2002..20701691679651.8038673-UTR-H-elongata_contig6115:2002..2070Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6115 2003..2070 +
1622930987.0008028-UTR-H-elongata_contig6115:2652..39151622930987.0008028-UTR-H-elongata_contig6115:2652..3915Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6115 2653..3915 +
1691679651.8205333-UTR-H-elongata_contig6115:2652..39151691679651.8205333-UTR-H-elongata_contig6115:2652..3915Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6115 2653..3915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930986.9841-CDS-H-elongata_contig6115:2070..26521622930986.9841-CDS-H-elongata_contig6115:2070..2652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6115 2071..2652 +
1691679651.8120923-CDS-H-elongata_contig6115:2070..26521691679651.8120923-CDS-H-elongata_contig6115:2070..2652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6115 2071..2652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6115.13662.1

>prot_H-elongata_contig6115.13662.1 ID=prot_H-elongata_contig6115.13662.1|Name=mRNA_H-elongata_contig6115.13662.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
MLLGNQLPLVNGISQLIISEEVSSQGNLPRRDVRERQPHDQPHEYPQGVM
ASDNLASGAFPGGRQRRHSVADGNGNDNGVRDRVSVPRRRQHSPEEVEEM
RTKEREEATKEAQQKIEELLATAGTRVRRHCKISVDLALATPGKMPQAAS
AQASKAKEMPVMMMNTAKKGLDLGALAVRSISDQLSDDTDKKK*
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mRNA from alignment at H-elongata_contig6115:1418..3915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6115.13662.1 ID=mRNA_H-elongata_contig6115.13662.1|Name=mRNA_H-elongata_contig6115.13662.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2498bp|location=Sequence derived from alignment at H-elongata_contig6115:1418..3915+ (Himanthalia elongata Himel1 dioecious)
GTGTTGTCGGGGACTTCTGTTCTACGGCGGCTTACAGAAAACCCTAGGGC
AGGAGCCGCGGTGTTTCGGATACAAGTTGATTCTCCCAAATGTTCAAGTC
ACCGAGGAAGGCGGAGGTGAGCACGGGCGAAATATTTGCGCAGCAATCGG
CTTGCGTCATTGGAAATATGGGGGGCGATCACCCGGCCCATCTTGCCTCC
GAAACGTGCTCGCTCAAGGCTTAGGTTGCCTCGCATTTTTTCCCGGAGGC
CCTTAACGAATGGCTGCTGTGAGTCCCCAAAATTTCGAAGGCTGAGGCGA
AAGATCCTCCTTATTTATCTCATAAATATATAAAGTTATTATGGTTGCCT
GGCCGTCGCAGTAGCAGCAGACGGTCAATTCAGGTTGTGTTCCATGGAAA
TTTATCCATTCTGTTGCTTCACCCGCCAGAGATTACCCCCCCCCCCCCCG
TGAATAATCGTGCTGCGGCCTAGAGCCTGCTGCTGCTGTAAGGTGTTACT
CTTGACCCGTCTTCTGCTGCAACAAACCTCGTCCCGCTTGTTTGATCCTT
GCGTTTGCTCGCCGTTGAAAATCTGAAAAACACAGTACCCCCGCCGCCGG
AGAAAGCCAAATTTATTTTCATCAGCATCGGCGTGAGCGTGTACAACAGA
GAGATGCTCTTGGGCAATCAGCTCCCGCTGGTGAATGGCATCAGCCAGCT
CATTATCTCGGAAGAAGTCTCGAGCCAAGGGAATCTTCCACGGCGTGACG
TCAGAGAGAGGCAGCCACATGACCAACCGCATGAATACCCACAGGGCGTC
ATGGCAAGTGACAATCTCGCGAGCGGTGCCTTCCCCGGGGGGCGCCAGAG
GCGCCACAGCGTCGCCGACGGCAACGGCAACGACAACGGCGTGCGCGACC
GCGTTAGCGTACCCCGACGACGACAACACAGCCCAGAAGAAGTCGAAGAG
ATGCGGACGAAAGAAAGGGAAGAGGCGACAAAGGAAGCACAGCAGAAGAT
CGAGGAGCTGCTCGCGACGGCGGGCACTCGGGTGCGAAGACACTGCAAAA
TCTCGGTGGATCTCGCTCTAGCCACCCCGGGCAAGATGCCCCAGGCCGCC
AGCGCGCAAGCGTCGAAGGCGAAGGAGATGCCCGTGATGATGATGAACAC
CGCGAAGAAGGGGCTTGACTTAGGGGCCTTGGCCGTTCGATCTATCAGCG
ACCAGCTTTCAGACGATACGGACAAAAAGAAATGACCCTTCTATTTCTCT
CTTTCTCTCTTTTCTCTCGACTTCGGTGAATTCATGGGAATGCCATACGT
CTTTAGCCGGCCCTACACTAAATCCCTTACACTTTTTTATGATTTATGGT
GGTACGCGAGCGAGCGCGGGGCGGGGCGGGGCGGCGGCCGTCGGCCTTTT
GGCCGCGCTGCGCAATATTCATCGATGTTCATTTTTCGCCGAGTTCCGTC
CGTTGATTCGGGGGTTGATTCGGCTTTTGCTGCTACCGGAAACAGAGGTC
TGGAGAAAATTACGATTATATTTTAGTAGACCGTGCAACACGAACTTAGA
GGCGAGGGTAATATATAGCTATCGCCACGTAATCACACTCTTGCACTCTT
GCGCTGATGGTTGAAAGCTTGAAATATTTTGTCAGCTCGCGCGTCGGAGA
CCTCATGCGATGGCGCTTTTTTTTTTTTTTACTTGTCTGTGCTGGTCTCT
TATTAAACATTTTCTTTTCTTTTCTGCGCGGTATTTCAGATTGTCTTACC
ATGCTCCAATCGAGGTCCCTGTTCTCCGAGTAGAGTCATGCGCCAAGATT
CGAATGTTCGCGGTATCATTTGCGCCTCTTTGGGGGGCCGTAGCAGCGCA
GCCGTTACATATGTTTTGTTTTTGGGGGGGGGGCGAATCAATATTTGATC
CCAATTCTCCAAATTGTCGCACCAAAAATTGCCGTGTATCAAATCGTATT
ATTTTGTTTTTCAAAGGGGGTGGGGTGGCGTGGGAGGGGTAAGAGCTAAA
CGAGAGTTATTGTAAAAAGTGGCGTGCCCTGCTGGTAAGCACGTCTTCCG
TAGACTACTGTATCCCGCTCAGTTTCACACCCCTTGACAGTCCTGTGAGT
CTTTTCTGTCTATTCAGAGAGAAAGAGCCAGTCACCAAGGCTCTGCGCTA
TCCTCTCTTCGCTGCGAACCGGAATATCTGGGGTGGTAAGGAGCAAGTGG
GGGGATAGTTTCTACGCGTCGGGGCACATCATGATGGAAGACAGGGAAAT
GATGTGGATATAACTAACCGACGTACGACGTATTGGTGGTGTAAAGAGTG
TTAATTAAACCTTTCCTTAATTAAGACACCCCATGGCCAGCATCGGATCG
TCTTGTCGCGGCTAATCGTGTACGACTCGTCAGGATCGCACATTGTTGGT
CACACATTTAGCATTCTGGAGTACTGTCGATGGTTCATTGCTGCCCCCAA
GAAACCCTTTCTTAATGTCTGTCCCTTCATTCATTCCACCGAAAACCT
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Coding sequence (CDS) from alignment at H-elongata_contig6115:1418..3915+

>mRNA_H-elongata_contig6115.13662.1 ID=mRNA_H-elongata_contig6115.13662.1|Name=mRNA_H-elongata_contig6115.13662.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig6115:1418..3915+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTTGGGCAATCAGCTCCCGCTGGTGAATGGCATCAGCCAGCTCAT
TATCTCGGAAGAAGTCTCGAGCCAAGGGAATCTTCCACGGCGTGACGTCA
GAGAGAGGCAGCCACATGACCAACCGCATGAATACCCACAGGGCGTCATG
GCAAGTGACAATCTCGCGAGCGGTGCCTTCCCCGGGGGGCGCCAGAGGCG
CCACAGCGTCGCCGACGGCAACGGCAACGACAACGGCGTGCGCGACCGCG
TTAGCGTACCCCGACGACGACAACACAGCCCAGAAGAAGTCGAAGAGATG
CGGACGAAAGAAAGGGAAGAGGCGACAAAGGAAGCACAGCAGAAGATCGA
GGAGCTGCTCGCGACGGCGGGCACTCGGGTGCGAAGACACTGCAAAATCT
CGGTGGATCTCGCTCTAGCCACCCCGGGCAAGATGCCCCAGGCCGCCAGC
GCGCAAGCGTCGAAGGCGAAGGAGATGCCCGTGATGATGATGAACACCGC
GAAGAAGGGGCTTGACTTAGGGGCCTTGGCCGTTCGATCTATCAGCGACC
AGCTTTCAGACGATACGGACAAAAAGAAATGAATGCTCTTGGGCAATCAG
CTCCCGCTGGTGAATGGCATCAGCCAGCTCATTATCTCGGAAGAAGTCTC
GAGCCAAGGGAATCTTCCACGGCGTGACGTCAGAGAGAGGCAGCCACATG
ACCAACCGCATGAATACCCACAGGGCGTCATGGCAAGTGACAATCTCGCG
AGCGGTGCCTTCCCCGGGGGGCGCCAGAGGCGCCACAGCGTCGCCGACGG
CAACGGCAACGACAACGGCGTGCGCGACCGCGTTAGCGTACCCCGACGAC
GACAACACAGCCCAGAAGAAGTCGAAGAGATGCGGACGAAAGAAAGGGAA
GAGGCGACAAAGGAAGCACAGCAGAAGATCGAGGAGCTGCTCGCGACGGC
GGGCACTCGGGTGCGAAGACACTGCAAAATCTCGGTGGATCTCGCTCTAG
CCACCCCGGGCAAGATGCCCCAGGCCGCCAGCGCGCAAGCGTCGAAGGCG
AAGGAGATGCCCGTGATGATGATGAACACCGCGAAGAAGGGGCTTGACTT
AGGGGCCTTGGCCGTTCGATCTATCAGCGACCAGCTTTCAGACGATACGG
ACAAAAAGAAATGA
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