prot_H-elongata_contig61147.13661.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61147.13661.1
Unique Nameprot_H-elongata_contig61147.13661.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length174
Homology
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BLAST of mRNA_H-elongata_contig61147.13661.1 vs. uniprot
Match: A0A6H5L232_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L232_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 4.510e-30
Identity = 61/132 (46.21%), Postives = 84/132 (63.64%), Query Frame = 0 
Query:    1 MSRRSINEKAVFTVSTDACSKELQAALSNWRAYLDRAWDTLDDGWKELEKKMVTIGITKPVGVDGALVHLNVGGLHLNVRRAVIESMCHKPVNDWALGNLFDVVWDSRVPRDGDGRIFLDESLVILKHLVHT 132
            MSR  +NE   F+ +  A SKE++AAL   R  + +AW+ ++ GW EL +  +  GITKP G    ++ LNVGG HL  RR V++    +P   WALGNLF+ VWD R+PRD DGRI LD+S   +K L+H+
Sbjct:    1 MSRCHMNEDDTFSATVTAYSKEMEAALGQRRKGMSQAWEDVERGWHELNQCRIDAGITKPFGSQEGMLRLNVGGSHLRFRRCVLDGK-KEPSATWALGNLFESVWDDRLPRDSDGRIVLDKSPACVKDLIHS 131
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BLAST of mRNA_H-elongata_contig61147.13661.1 vs. uniprot
Match: D7G2H5_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H5_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 5.770e-27
Identity = 54/110 (49.09%), Postives = 72/110 (65.45%), Query Frame = 0 
Query:   23 LQAALSNWRAYLDRAWDTLDDGWKELEKKMVTIGITKPVGVDGALVHLNVGGLHLNVRRAVIESMCHKPVNDWALGNLFDVVWDSRVPRDGDGRIFLDESLVILKHLVHT 132
            ++A LS  R  + +AW+ +D GW EL +  +  GITKP G    ++ LNVGG HLN RR ++     +P   WALGNLF+ VWD R+PRD DGRI LDES   +KHL+H+
Sbjct:    1 MEAVLSQRRKEMSQAWEDVDRGWHELNQCRIDAGITKPSGSQQGMLRLNVGGSHLNFRRCILAGR-KEPSATWALGNLFESVWDDRLPRDSDGRIVLDESPACVKHLIHS 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61147.13661.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L232_9PHAE4.510e-3046.21TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G2H5_ECTSI5.770e-2749.09TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 146..165
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..145
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 166..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61147contigH-elongata_contig61147:439..960 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61147.13661.1mRNA_H-elongata_contig61147.13661.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61147 439..2187 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61147.13661.1 ID=prot_H-elongata_contig61147.13661.1|Name=mRNA_H-elongata_contig61147.13661.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
MSRRSINEKAVFTVSTDACSKELQAALSNWRAYLDRAWDTLDDGWKELEK
KMVTIGITKPVGVDGALVHLNVGGLHLNVRRAVIESMCHKPVNDWALGNL
FDVVWDSRVPRDGDGRIFLDESLVILKHLVHTKSWRRPSRLIIKKTSFCG
ISLLIPSLSLLTNALTSSTSPGS*
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