prot_H-elongata_contig61116.13658.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61116.13658.1
Unique Nameprot_H-elongata_contig61116.13658.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length254
Homology
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: D8LKE1_ECTSI (Similar to retinitis pigmentosa GTPase regulator n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKE1_ECTSI)

HSP 1 Score: 432 bits (1110), Expect = 3.470e-142
Identity = 197/254 (77.56%), Postives = 220/254 (86.61%), Query Frame = 0
Query:    1 KGPRICSSIQPLPKVVSLDRYLKKGDAPALAAAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 254
            K PRIC+S+Q  PK V LDR++KKGD+PA AAAGANHS+L T EG+LFRWGVEDGD++PFP  +CTQIPLPC+EVCCGRKHT+ALMKGG        +VM+WGTGYFGQLGHGDN SYRHPRLLRRLDPQRLGERV+QVACGGYHSAV TDAGRVF+WGFNRYGQCGNGSKDNTVPEP LV+LS V PG VGE PKV+CGRHHSALVT  GALY+WGAC FGKLGLQD  KTVC P+EV FF D+PL+ AAAG+
Sbjct:   25 KEPRICASVQETPKAVPLDRFVKKGDSPAFAAAGANHSILRTSEGKLFRWGVEDGDVHPFPTGVCTQIPLPCIEVCCGRKHTVALMKGG--------FVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRLGERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCGNGSKDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGKLGLQDAEKTVCIPQEVTFFSDKPLVQAAAGD 270          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: K8Z8W0_NANGC (Hect domain and rld 4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8W0_NANGC)

HSP 1 Score: 218 bits (555), Expect = 2.160e-64
Identity = 113/249 (45.38%), Postives = 154/249 (61.85%), Query Frame = 0
Query:    8 SIQPLPKVVSLDRYLKKGDAPAL-AAAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLG-ERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 254
            S+  LP+ ++L+RY+ + D      A GA  ++ LT  G  ++WG  +G  YP P+ +   +PL C++V CGRKH +ALM+GG        +V +WG GYFGQLG GDN+S   PRL+  LDP RLG +RV+ VACGG HSAV T    VF +GFNRYGQ G G   N +  P  VN+S +   ++ +   +VCGRHH++++T  G ++SWGA  FG+LGL D  K V  P EV  FR  PL   A G+
Sbjct:  107 SVLHLPQPLALERYVAEEDGLVQDIACGATFTIALTSRGVPYQWGTVNGRAYPEPSRVSLGVPLRCLQVSCGRKHALALMEGG--------FVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMSGIGSSQIRQ---LVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGD 344          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: W7U0Q3_9STRA (Putative e3 ubiquitin-protein ligase herc4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0Q3_9STRA)

HSP 1 Score: 218 bits (555), Expect = 3.570e-64
Identity = 113/249 (45.38%), Postives = 154/249 (61.85%), Query Frame = 0
Query:    8 SIQPLPKVVSLDRYLKKGDAPAL-AAAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLG-ERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 254
            S+  LP+ ++L+RY+ + D      A GA  ++ LT  G  ++WG  +G  YP P+ +   +PL C++V CGRKH +ALM+GG        +V +WG GYFGQLG GDN+S   PRL+  LDP RLG +RV+ VACGG HSAV T    VF +GFNRYGQ G G   N +  P  VN+S +   ++ +   +VCGRHH++++T  G ++SWGA  FG+LGL D  K V  P EV  FR  PL   A G+
Sbjct:   61 SVLHLPQPLALERYVAEEDGLVQDIACGATFTIALTSRGVPYQWGTVNGRAYPEPSRVSLGVPLRCLQVSCGRKHALALMEGG--------FVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMSGIGSSQIRQ---LVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGD 298          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A4D9DAH8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAH8_9STRA)

HSP 1 Score: 193 bits (491), Expect = 3.180e-55
Identity = 98/198 (49.49%), Postives = 126/198 (63.64%), Query Frame = 0
Query:   58 YPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLG-ERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 254
            YP P+ +   +PL C++V CGRKH +ALM+GG        YV +WG GYFGQLG GDN+S   PRL+  LDP RLG +RV+ VACGG HSAV T    VF +GFNRYGQ G G   N +  P  VN+S +   ++ +   +VCGRHH++++T  G ++SWGA  FG+LGL D  K V  P EV  FR  PL   A G+
Sbjct:   28 YPEPSRVSLGVPLRCLQVSCGRKHALALMEGG--------YVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMSGIGSSQIRQ---LVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGD 214          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A835Z434_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z434_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.470e-48
Identity = 93/191 (48.69%), Postives = 118/191 (61.78%), Query Frame = 0
Query:   68 IPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGS-KDNTVPEPVLVNLSNVPPGRVGEAPKVV-CGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPL--LTAAAGE 254
            +PL  V++ CGR+H++ALM+GG        +VMTWG GYFGQLGHGDN S  +PRLL +L+PQ+    ++ VA GGYHS  VT AGR F+WGFNRYGQCG G   D  V EP  V L  +     GE  +   CGRHH   V + G +Y+WGA GFG+LG+ D  K    P EV   R + +  +  A GE
Sbjct:    3 VPLAAVQIACGRRHSVALMEGG--------FVMTWGIGYFGQLGHGDNASCTNPRLLHQLEPQQ----IVSVAAGGYHSVAVTRAGRGFAWGFNRYGQCGVGDCADAVVSEPRAVALREL--RARGEGVRAAACGRHHCVAVGTGGGVYAWGAGGFGRLGVADPPKVAPYPVEVGALRGQRVAEVRVACGE 179          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A7S3GVQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVQ9_9STRA)

HSP 1 Score: 162 bits (409), Expect = 5.820e-46
Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = 0
Query:  102 WGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNG----SKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 254
            WGTGYFGQLGHGD+ S+  PR++  L+P+RLG +VI VACGG HS V+TD+GRVF WG NR GQCG G     K ++V EP  V+ S++          +V GR+HSA++++ G +++WG  GFG+LGL D  KT   P EV  F   P++T +AG+
Sbjct:    1 WGTGYFGQLGHGDDSSWDSPRMISVLEPKRLGAKVINVACGGSHSGVITDSGRVFMWGLNRSGQCGQGLSAKGKSDSVLEPRPVDFSHLANHGTLGVKSLVLGRNHSAMLSTTGRVFTWGEAGFGRLGLNDVKKTQLIPAEVMAFSKNPVVTLSAGD 157          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A7S2CLQ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CLQ1_9STRA)

HSP 1 Score: 134 bits (337), Expect = 7.190e-35
Identity = 76/185 (41.08%), Postives = 108/185 (58.38%), Query Frame = 0
Query:   32 AAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRL-GERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCG-------NGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVT 208
            A G + +V  T +G ++ WG + G++ P P  +     +  V V CGRKHT+ L++G          V+++GTGYFGQLGHG++ S R+PR++  LD + L G+RV  VA G  HS VVT  GR++ WG NR  QCG       +G   +T+  P   +LSNV     G   ++VCGRHH AL+T
Sbjct:   68 ACGGHFTVAATTQGTVYHWGSDGGEMRPKPELMELGTKVCAVTVACGRKHTLILVEGAR--------VLSYGTGYFGQLGHGNDSSLRNPRVIESLDSKALNGDRVTAVAAGFAHSGVVTHTGRLYMWGLNRSCQCGVEPPTGSSGLAASTLFAPHPTDLSNVKDH--GRPVQLVCGRHHPALLT 242          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A7S2A6T9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6T9_TRICV)

HSP 1 Score: 123 bits (308), Expect = 6.370e-29
Identity = 77/230 (33.48%), Postives = 113/230 (49.13%), Query Frame = 0
Query:   32 AAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRK---------HTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAA 252
            A G+ H+ ++T  G L+ WG ++  +         Q     +E   G++         HT  L   GE        V TWG G FG+LGHG   +   PRL+  L    LG+R  QVACGG+H+AV+T+ GR++++G   +GQ G+G K N V    +  L  +         ++ CG  HS  +TS G +Y+WG    GKLG    GK V TP+ V    D  ++  A+
Sbjct:   41 ACGSRHTAVITSTGALYTWGDKENGVAGHGDTEGHQYTPKLLERLAGKRIVQLSACGFHTGCLTDAGE--------VYTWGEGKFGRLGHGAERNCHSPRLVEAL----LGKRPRQVACGGFHTAVITEDGRMYTFGGGEHGQLGHGDKVNKVKPTFVQALEGI------FVSQITCGWSHSVALTSKGRVYTWGNGDHGKLG-HGSGKKVSTPQMVEKLSDHKVVRVAS 251          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A182GBT3_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GBT3_AEDAL)

HSP 1 Score: 121 bits (303), Expect = 8.130e-28
Identity = 80/235 (34.04%), Postives = 121/235 (51.49%), Query Frame = 0
Query:   31 AAAGANHSVLLTKEGRLFRWGVEDG-------DIYPF--PAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNV-SYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLV-NLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 254
            AA G  H++LLTK+G+LF  G  D        D  P   P  I +        V CG  H++AL   G+ FS        WG+   GQLGH  ++ +Y  PR+++ +  +     VIQ+A G +HS  +T++G +FSWG N YGQ G G+    V  P LV +L+ +P         + CG +HS  V+  GA++ WG   FG+LGL D   + C P+++   R+  +   + G+
Sbjct:   63 AACGTTHTLLLTKDGKLFSCGNNDHGQLGHDTDCLPNKRPQFISSLENYIITHVSCGTTHSLALTNWGQVFS--------WGSNSIGQLGHDSDLQTYTTPRMVKTIATKT----VIQIASGQFHSLALTNSGELFSWGANGYGQLGLGTTSEKVVTPTLVKSLAGIP------IAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDL-VSRCFPQQLKTLRNLGVRYISCGD 278          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A7S2PM89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PM89_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.140e-27
Identity = 78/217 (35.94%), Postives = 114/217 (52.53%), Query Frame = 0
Query:   32 AAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRK---------HTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREV 239
            A G+ H+ ++T +G L+ WG ++  +         Q     +E   G+K         HT  L   GE F        TWG G FG+LGHG   +   PRL+  L    LG+R  Q+ACGG+HSAVVT+ G+++++G   +GQ G+G K N V +P LV   +   G V +  ++ CG  HS  +T+ G +++WG    GKLG    GK V TP+ V
Sbjct:   93 ACGSRHTAVVTNKGCLYTWGDKENGVAGHGDTDGHQYTPKLLERLSGKKVVQLSACGFHTGCLTDQGECF--------TWGEGKFGRLGHGAERNCHSPRLIETL----LGKRPKQIACGGFHSAVVTEDGKMYTFGGGEHGQLGHGDKVNKV-KPTLVQALD---GIVLQ--QITCGWSHSVALTTNGEVFTWGNGDHGKLG-HGNGKKVSTPQLV 290          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKE1_ECTSI3.470e-14277.56Similar to retinitis pigmentosa GTPase regulator n... [more]
K8Z8W0_NANGC2.160e-6445.38Hect domain and rld 4 (Fragment) n=1 Tax=Nannochlo... [more]
W7U0Q3_9STRA3.570e-6445.38Putative e3 ubiquitin-protein ligase herc4 n=1 Tax... [more]
A0A4D9DAH8_9STRA3.180e-5549.49Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835Z434_9STRA1.470e-4848.69Regulator of chromosome condensation 1/beta-lactam... [more]
A0A7S3GVQ9_9STRA5.820e-4649.68Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2CLQ1_9STRA7.190e-3541.08Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2A6T9_TRICV6.370e-2933.48Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A182GBT3_AEDAL8.130e-2834.04Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A7S2PM89_9STRA2.140e-2735.94Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000408Regulator of chromosome condensation, RCC1PRINTSPR00633RCCNDNSATIONcoord: 98..114
score: 47.06
coord: 136..149
score: 36.9
coord: 155..171
score: 33.33
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 211..253
e-value: 3.5E-6
score: 27.5
coord: 101..149
e-value: 1.6E-11
score: 44.6
coord: 153..206
e-value: 4.5E-13
score: 49.6
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 139..149
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 31..41
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 75..85
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 97..152
score: 14.966
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 211..254
score: 11.368
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 153..210
score: 12.896
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3D2.130.10.30coord: 8..253
e-value: 4.1E-52
score: 179.2
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 30..244
NoneNo IPR availablePANTHERPTHR22870REGULATOR OF CHROMOSOME CONDENSATIONcoord: 13..226
coord: 196..240

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61116contigH-elongata_contig61116:550..2829 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61116.13658.1mRNA_H-elongata_contig61116.13658.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61116 550..2829 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61116.13658.1 ID=prot_H-elongata_contig61116.13658.1|Name=mRNA_H-elongata_contig61116.13658.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
KGPRICSSIQPLPKVVSLDRYLKKGDAPALAAAGANHSVLLTKEGRLFRW
GVEDGDIYPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVM
TWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVT
DAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCG
RHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTA
AAGE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000408Reg_chr_condens
IPR009091RCC1/BLIP-II