mRNA_H-elongata_contig61108.13657.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61108.13657.1
Unique NamemRNA_H-elongata_contig61108.13657.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: D7G6E1_ECTSI (NFACT-R_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6E1_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.060e-33
Identity = 56/66 (84.85%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:   13 DGHLLYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 210
            DGH+LYMGKDK+ENEDLIRYG PEDVWFHVDNLSSAHVYLRMNRGEK+K+L P LLVECC+LVK +
Sbjct:    9 DGHMLYMGKDKYENEDLIRYGFPEDVWFHVDNLSSAHVYLRMNRGEKLKELDPALLVECCTLVKAN 74
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BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A835Z4I1_9STRA (NFACT-R_1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I1_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.660e-31
Identity = 51/65 (78.46%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:   16 GHLLYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 210
            GH LYMGKDK+ENEDLIRYG+PEDVWFHVDNLSSAHVYLRMN+GEK+K++ PE+++ECC LVK +
Sbjct:    9 GHTLYMGKDKYENEDLIRYGLPEDVWFHVDNLSSAHVYLRMNKGEKLKEVLPEVIMECCQLVKAN 73
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BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A7S0GIL2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GIL2_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.300e-27
Identity = 53/102 (51.96%), Postives = 75/102 (73.53%), Query Frame = 1 
Query:   16 GHLLYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVK---VSVGRLNQAWGGSARFKKTRRFSFKKQIGMHQHQQQ 312
            G+ LYMGKDK+ENEDLI+YG+PEDVWFHVD++SSAHVYLR   GE + D++PEL+++CCSLVK   ++  +LN  +    R+K  ++ S   +  +  H+QQ
Sbjct:   18 GYTLYMGKDKYENEDLIKYGLPEDVWFHVDDMSSAHVYLRQKTGELLADISPELMLDCCSLVKANSIAGCKLNSVYVIYTRWKNLKKTSRMVEGEVSYHRQQ 119
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BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A672IGJ2_SALFA (Coiled-coil domain-containing protein 25 n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672IGJ2_SALFA)

HSP 1 Score: 101 bits (252), Expect = 2.170e-25
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   25 LYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVK 204
            +YMGKDK+ENEDLIRYG PED+WFHVD LSSAHVYLRM +G+ + D+ PE+L++C  LVK
Sbjct:   16 IYMGKDKYENEDLIRYGWPEDIWFHVDKLSSAHVYLRMPKGQTIDDIPPEVLIDCAQLVK 75
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BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A452DR27_CAPHI (Coiled-coil domain-containing protein 25 n=1 Tax=Capra hircus TaxID=9925 RepID=A0A452DR27_CAPHI)

HSP 1 Score: 101 bits (251), Expect = 2.990e-25
Identity = 41/64 (64.06%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:   19 HLLYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 210
            + +YMGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLR+++GEK++D+  E+L++C  LVK +
Sbjct:   14 YTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKIEDIPKEVLMDCAHLVKAN 77
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BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A337SDQ0_FELCA (Coiled-coil domain-containing protein 25 n=35 Tax=Eutheria TaxID=9347 RepID=A0A337SDQ0_FELCA)

HSP 1 Score: 101 bits (251), Expect = 3.160e-25
Identity = 41/64 (64.06%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:   19 HLLYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 210
            + +YMGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLR+++GEK++D+  E+L++C  LVK +
Sbjct:   15 YTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKIEDIPKEVLMDCAHLVKAN 78
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BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A0S7LUL1_9TELE (Coiled-coil domain-containing protein 25 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LUL1_9TELE)

HSP 1 Score: 103 bits (257), Expect = 3.560e-25
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:   25 LYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVK------VSVGRLNQAWGGSARFKKTRRFSFKKQIGMHQHQQ 309
            +YMGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLRM +G+ + D+ PE+LV+C  LVK        +  +N  +   A  KKT       QIG H+ ++
Sbjct:   55 IYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRMPKGKTIDDIPPEVLVDCAQLVKNNSIQGCKMNNINVVYTAWANLKKTGDMDVG-QIGFHKQKE 154
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BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: UPI00122F24FF (coiled-coil domain-containing protein 25 isoform X3 n=1 Tax=Globicephala melas TaxID=9731 RepID=UPI00122F24FF)

HSP 1 Score: 101 bits (251), Expect = 3.740e-25
Identity = 41/64 (64.06%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:   19 HLLYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 210
            + +YMGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLR+++GEK++D+  E+L++C  LVK +
Sbjct:   15 YTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKIEDIPKEVLMDCAHLVKAN 78
[Close]
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: UPI001130B46A (coiled-coil domain-containing protein 25 isoform X2 n=1 Tax=Oncorhynchus nerka TaxID=8023 RepID=UPI001130B46A)

HSP 1 Score: 102 bits (253), Expect = 4.500e-25
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:   19 HLLYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVK------VSVGRLNQAWGGSARFKKTRRFSFKKQIGMHQHQQ 309
            + +YMGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLRM +G  ++D+  E+L++C  LVK        +  +N  +   A  KKT       QIG H+H++
Sbjct:   14 YTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRMPKGLTIEDIPKEVLIDCAQLVKNNSIQGCKMNNINVVYTPWANLKKTGDMDVG-QIGFHRHKE 115
[Close]
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A3B3TTG9_9TELE (Coiled-coil domain-containing protein 25 n=1 Tax=Poecilia latipinna TaxID=48699 RepID=A0A3B3TTG9_9TELE)

HSP 1 Score: 103 bits (258), Expect = 5.570e-25
Identity = 52/118 (44.07%), Postives = 75/118 (63.56%), Query Frame = 1 
Query:   25 LYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVK------VSVGRLNQAWGGSARFKKTRRFSFKKQIGMHQHQQQ*LYCLHRWLSYVSDLL 360
            +YMGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLRM +G+ + D+ PE+LV+C  LVK        +  +N  +   A  KKT       QIG H+ ++  +  + + ++ + + L
Sbjct:   16 IYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRMPKGKTIDDIPPEVLVDCAQLVKNNSIQGCKMNNINVVYTAWANLKKTGDMDVG-QIGFHKQKEVKIVAVEKKINEIVNRL 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6E1_ECTSI1.060e-3384.85NFACT-R_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A835Z4I1_9STRA1.660e-3178.46NFACT-R_1 domain-containing protein n=1 Tax=Tribon... [more]
A0A7S0GIL2_9STRA1.300e-2751.96Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A672IGJ2_SALFA2.170e-2570.00Coiled-coil domain-containing protein 25 n=1 Tax=S... [more]
A0A452DR27_CAPHI2.990e-2564.06Coiled-coil domain-containing protein 25 n=1 Tax=C... [more]
A0A337SDQ0_FELCA3.160e-2564.06Coiled-coil domain-containing protein 25 n=35 Tax=... [more]
A0A0S7LUL1_9TELE3.560e-2550.50Coiled-coil domain-containing protein 25 (Fragment... [more]
UPI00122F24FF3.740e-2564.06coiled-coil domain-containing protein 25 isoform X... [more]
UPI001130B46A4.500e-2548.54coiled-coil domain-containing protein 25 isoform X... [more]
A0A3B3TTG9_9TELE5.570e-2544.07Coiled-coil domain-containing protein 25 n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61108contigH-elongata_contig61108:1105..2159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue5e-23
Seed eggNOG ortholog2880.D7G6E1
Preferred nameCCDC25
KEGG koko:K04989
KEGG TC1.A.5.1.2
KEGG Pathwayko04742,map04742
GOsGO:0001581,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0007600,GO:0007606,GO:0008150,GO:0008324,GO:0009268,GO:0009581,GO:0009582,GO:0009593,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010447,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0032501,GO:0032991,GO:0034220,GO:0034702,GO:0034703,GO:0042221,GO:0043235,GO:0044424,GO:0044425,GO:0044464,GO:0046873,GO:0050877,GO:0050896,GO:0050906,GO:0050907,GO:0050909,GO:0050912,GO:0050915,GO:0050982,GO:0051179,GO:0051234,GO:0051606,GO:0051716,GO:0055085,GO:0070588,GO:0070838,GO:0071214,GO:0071467,GO:0071468,GO:0071944,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0104004,GO:1902495,GO:1990351
EggNOG free text desc.Domain of unknown function (DUF814)
EggNOG OGsKOG3272@1,KOG3272@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categoryother localisation
Exons2
Model size461
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61108.13657.1prot_H-elongata_contig61108.13657.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61108 1135..2013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930986.0690103-UTR-H-elongata_contig61108:1104..11341622930986.0690103-UTR-H-elongata_contig61108:1104..1134Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61108 1105..1134 +
1691679651.484618-UTR-H-elongata_contig61108:1104..11341691679651.484618-UTR-H-elongata_contig61108:1104..1134Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61108 1105..1134 +
1622930986.1240544-UTR-H-elongata_contig61108:2013..21591622930986.1240544-UTR-H-elongata_contig61108:2013..2159Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61108 2014..2159 +
1691679651.523182-UTR-H-elongata_contig61108:2013..21591691679651.523182-UTR-H-elongata_contig61108:2013..2159Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61108 2014..2159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930986.0875163-CDS-H-elongata_contig61108:1134..12571622930986.0875163-CDS-H-elongata_contig61108:1134..1257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61108 1135..1257 +
1691679651.5029438-CDS-H-elongata_contig61108:1134..12571691679651.5029438-CDS-H-elongata_contig61108:1134..1257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61108 1135..1257 +
1622930986.1075964-CDS-H-elongata_contig61108:1851..20131622930986.1075964-CDS-H-elongata_contig61108:1851..2013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61108 1852..2013 +
1691679651.5118003-CDS-H-elongata_contig61108:1851..20131691679651.5118003-CDS-H-elongata_contig61108:1851..2013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61108 1852..2013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61108.13657.1

>prot_H-elongata_contig61108.13657.1 ID=prot_H-elongata_contig61108.13657.1|Name=mRNA_H-elongata_contig61108.13657.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELL
VECCSLVKVSVGRLNQAWGGSARFKKTRRFSFKKQIGMHQHQQQ*
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mRNA from alignment at H-elongata_contig61108:1105..2159+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61108.13657.1 ID=mRNA_H-elongata_contig61108.13657.1|Name=mRNA_H-elongata_contig61108.13657.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1055bp|location=Sequence derived from alignment at H-elongata_contig61108:1105..2159+ (Himanthalia elongata Himel1 dioecious)
TCTCATCGGCAAGACGGGCACTTGTTGTACATGGGCAAAGATAAGCACGA
GAACGAGGACCTGATTCGTTATGGTGTCCCTGAAGACGTGTGGTTTCACG
TGGATAACTTGAGCTCGGCGCACGTCTACCTCCGCATGAACCGCGGAGAA
AAGGTGTAGACAGCTAAAGACATTGACTCGTGCTAAAGAGTTAAGAGTAC
AAAATACTACTGTGTTCTTGTATGATCCCTTCCCTATGTTACAGTCAAAA
TGCTGCACCAGTGAAATTAAACCACGGCATGTGTATTGTGTATACCGTGC
GCGTGGAGCGTCCACGAAATCGCCACGACGTTTGCCCAGAGCGCGTCCGG
CGAAGCAAGTTTAGGATTATCACCGCAGCCAAACGGTCCTGCCATGAAAG
GCGTAGCCTTGCCATTGGTGCGGATAACAAGCGGAATGATTCCGCGAATG
GATCGATACTGAGTCAACCGTAATACAAGAACTATCGCAAGTTAGCAACG
TTTCACGGACAAAAAATGACTCTTGACAACGAGAGGGTTTCAAGCATTTT
TCAAGCTGTGCAGATGTGCTCTGTGCTCCATGGTATCATGTCGCGTGTCG
CATACGAGTTTGATGCCTTCCTCCCGGTGGTGCCTTGACCATGCAACAAG
CGCCGTACATACATAGGTAGAGCGAGTCATATCCGCGTCATTGCCGGTAA
CCCGGTCTCTCAACACGTTCGTCGGTCGATGGCCCATATCCATTAAGGTG
AAGGACCTCGCTCCCGAGCTTTTGGTTGAATGTTGCTCGCTCGTAAAGGT
GAGCGTCGGAAGACTCAATCAAGCTTGGGGAGGCTCAGCCCGGTTTAAAA
AAACGCGCCGCTTTTCTTTCAAGAAACAAATTGGCATGCACCAGCACCAG
CAGCAGTAGCTCTATTGCCTGCATCGCTGGCTTAGCTACGTCTCTGACTT
GCTAGCGTATTATTAAAAAAAGGTACCTCTGGCTTGGTTTTTCATCGCGT
GCAGCTGTACACATGGGGCCTCTAAAAGCGCTTTGATGTTCCCAAAGCCT
GGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig61108:1105..2159+

>mRNA_H-elongata_contig61108.13657.1 ID=mRNA_H-elongata_contig61108.13657.1|Name=mRNA_H-elongata_contig61108.13657.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig61108:1105..2159+ (Himanthalia elongata Himel1 dioecious)
ATGGGCAAAGATAAGCACGAGAACGAGGACCTGATTCGTTATGGTGTCCC
TGAAGACGTGTGGTTTCACGTGGATAACTTGAGCTCGGCGCACGTCTACC
TCCGCATGAACCGCGGAGAAAAGATGGGCAAAGATAAGCACGAGAACGAG
GACCTGATTCGTTATGGTGTCCCTGAAGACGTGTGGTTTCACGTGGATAA
CTTGAGCTCGGCGCACGTCTACCTCCGCATGAACCGCGGAGAAAAGGTGA
AGGACCTCGCTCCCGAGCTTTTGGTTGAATGTTGCTCGCTCGTAAAGGTG
AGCGTCGGAAGACTCAATCAAGCTTGGGGAGGCTCAGCCCGGTTTAAAAA
AACGCGCCGCTTTTCTTTCAAGAAACAAATTGGCATGCACCAGCACCAGC
AGCAGTAGGTGAAGGACCTCGCTCCCGAGCTTTTGGTTGAATGTTGCTCG
CTCGTAAAGGTGAGCGTCGGAAGACTCAATCAAGCTTGGGGAGGCTCAGC
CCGGTTTAAAAAAACGCGCCGCTTTTCTTTCAAGAAACAAATTGGCATGC
ACCAGCACCAGCAGCAGTAG
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