mRNA_H-elongata_contig6101.13643.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6101.13643.1
Unique NamemRNA_H-elongata_contig6101.13643.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6101.13643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6101contigH-elongata_contig6101:4242..4549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930984.973912-UTR-H-elongata_contig6101:4241..42461622930984.973912-UTR-H-elongata_contig6101:4241..4246Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6101 4242..4246 +
1691679651.0926065-UTR-H-elongata_contig6101:4241..42461691679651.0926065-UTR-H-elongata_contig6101:4241..4246Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6101 4242..4246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930984.9923997-CDS-H-elongata_contig6101:4246..45491622930984.9923997-CDS-H-elongata_contig6101:4246..4549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6101 4247..4549 +
1691679651.1002624-CDS-H-elongata_contig6101:4246..45491691679651.1002624-CDS-H-elongata_contig6101:4246..4549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6101 4247..4549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6101.13643.1prot_H-elongata_contig6101.13643.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6101 4247..4549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6101.13643.1

>prot_H-elongata_contig6101.13643.1 ID=prot_H-elongata_contig6101.13643.1|Name=mRNA_H-elongata_contig6101.13643.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MGAQEMMHLLMQTPSVHHNLEFVIATTVANSTDVRGTSTGGLWHVRSLLD
GYAVRNNYDTWTNRRDMPSGLDSMPYSEFASCFCLNRGGLITPLTDKNYV
V
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mRNA from alignment at H-elongata_contig6101:4242..4549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6101.13643.1 ID=mRNA_H-elongata_contig6101.13643.1|Name=mRNA_H-elongata_contig6101.13643.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=308bp|location=Sequence derived from alignment at H-elongata_contig6101:4242..4549+ (Himanthalia elongata Himel1 dioecious)
GGGACATGGGCGCCCAAGAGATGATGCACCTCCTCATGCAGACCCCGAGC
GTTCACCACAACCTCGAATTTGTTATCGCCACCACCGTCGCCAACTCGAC
GGACGTTCGTGGAACCTCGACGGGGGGTCTTTGGCATGTGAGATCCCTTC
TCGACGGCTACGCCGTCAGGAATAACTACGACACCTGGACTAACCGAAGG
GACATGCCCTCGGGTCTCGATTCCATGCCATACTCGGAGTTTGCTTCGTG
CTTCTGCCTCAACAGGGGTGGGCTCATCACGCCCCTCACCGATAAAAACT
ACGTCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig6101:4242..4549+

>mRNA_H-elongata_contig6101.13643.1 ID=mRNA_H-elongata_contig6101.13643.1|Name=mRNA_H-elongata_contig6101.13643.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig6101:4242..4549+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGCCCAAGAGATGATGCACCTCCTCATGCAGACCCCGAGCGTTCA
CCACAACCTCGAATTTGTTATCGCCACCACCGTCGCCAACTCGACGGACG
TTCGTGGAACCTCGACGGGGGGTCTTTGGCATGTGAGATCCCTTCTCGAC
GGCTACGCCGTCAGGAATAACTACGACACCTGGACTAACCGAAGGGACAT
GCCCTCGGGTCTCGATTCCATGCCATACTCGGAGTTTGCTTCGTGCTTCT
GCCTCAACAGGGGTGGGCTCATCACGCCCCTCACCGATAAAAACTACGTC
GTGATGGGCGCCCAAGAGATGATGCACCTCCTCATGCAGACCCCGAGCGT
TCACCACAACCTCGAATTTGTTATCGCCACCACCGTCGCCAACTCGACGG
ACGTTCGTGGAACCTCGACGGGGGGTCTTTGGCATGTGAGATCCCTTCTC
GACGGCTACGCCGTCAGGAATAACTACGACACCTGGACTAACCGAAGGGA
CATGCCCTCGGGTCTCGATTCCATGCCATACTCGGAGTTTGCTTCGTGCT
TCTGCCTCAACAGGGGTGGGCTCATCACGCCCCTCACCGATAAAAACTAC
GTCGTG
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