prot_H-elongata_contig61006.13642.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61006.13642.1
Unique Nameprot_H-elongata_contig61006.13642.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length58
Homology
BLAST of mRNA_H-elongata_contig61006.13642.1 vs. uniprot
Match: D7FWG1_ECTSI (Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.380e-28
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0
Query:    3 GFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEEDEDTAKAD 57
            GFLVSVDTYMNLLLTSTEEYVDG+FAGNLGDVLIRCNNVLYLRG EEDE  AKAD
Sbjct:   32 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 86          
BLAST of mRNA_H-elongata_contig61006.13642.1 vs. uniprot
Match: A0A176VZF1_MARPO (Sm protein F n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A176VZF1_MARPO)

HSP 1 Score: 93.6 bits (231), Expect = 9.930e-24
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 0
Query:    1 HPGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEEDEDTAKADD 58
            + G+LVSVD+YMNL L STEEY+DGQF GNLG+VLIRCNNVLYLRG  EDED  + D+
Sbjct:   30 YKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYLRGVPEDEDAVEEDE 87          
BLAST of mRNA_H-elongata_contig61006.13642.1 vs. uniprot
Match: A0A7J6WA49_THATH (Sm protein F n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WA49_THATH)

HSP 1 Score: 92.4 bits (228), Expect = 3.550e-23
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 0
Query:    1 HPGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEEDEDTAKAD 57
            + GFLVSVD+YMNL L +TEEY+DGQF GNLG++LIRCNNVLYLRG  EDE+  +AD
Sbjct:   37 YKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEEAD 93          
BLAST of mRNA_H-elongata_contig61006.13642.1 vs. uniprot
Match: A9S411_PHYPA (Sm protein F n=5 Tax=Streptophytina TaxID=131221 RepID=A9S411_PHYPA)

HSP 1 Score: 92.0 bits (227), Expect = 4.040e-23
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 0
Query:    1 HPGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEEDEDTAKADD 58
            + G+LVSVD+YMNL L STEE+VDG F GNLG+VLIRCNNV+YLRG  EDED A+ DD
Sbjct:   30 YKGYLVSVDSYMNLQLASTEEFVDGAFTGNLGEVLIRCNNVMYLRGVPEDEDAAEDDD 87          
BLAST of mRNA_H-elongata_contig61006.13642.1 vs. uniprot
Match: A0A835M2E4_9MAGN (Sm protein F n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M2E4_9MAGN)

HSP 1 Score: 91.7 bits (226), Expect = 6.070e-23
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 0
Query:    1 HPGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEEDEDTAKAD 57
            + G+LVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  EDED  +AD
Sbjct:   31 YKGYLVSVDSYMNLQLANTEEYIDGKFTGNLGEILIRCNNVLYLRGVPEDEDITEAD 87          
BLAST of mRNA_H-elongata_contig61006.13642.1 vs. uniprot
Match: A0A7I4DH71_PHYPA (Sm protein F n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DH71_PHYPA)

HSP 1 Score: 92.4 bits (228), Expect = 7.290e-23
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 0
Query:    1 HPGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEEDEDTAKADD 58
            H G+LVSVD+YMNL L STEE+VDG F GNLG+VLIRCNNV+YLRG  EDED A+ D+
Sbjct:   64 HGGYLVSVDSYMNLQLASTEEFVDGAFTGNLGEVLIRCNNVMYLRGVPEDEDAAEDDE 121          
BLAST of mRNA_H-elongata_contig61006.13642.1 vs. uniprot
Match: B9RUD7_RICCO (Sm protein F n=1 Tax=Ricinus communis TaxID=3988 RepID=B9RUD7_RICCO)

HSP 1 Score: 90.5 bits (223), Expect = 8.420e-23
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0
Query:    3 GFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEEDEDTAKAD 57
            GFL SVD+YMNL L +TEEY+DGQF GNLG++LIRCNNVLYLRG  EDED   AD
Sbjct:    6 GFLASVDSYMNLQLGNTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEDIEDAD 60          
BLAST of mRNA_H-elongata_contig61006.13642.1 vs. uniprot
Match: A0A804J679_MUSAM (Sm protein F n=10 Tax=Mesangiospermae TaxID=1437183 RepID=A0A804J679_MUSAM)

HSP 1 Score: 90.9 bits (224), Expect = 1.130e-22
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 0
Query:    1 HPGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEEDEDTAKAD 57
            + G+LVSVD+YMNL L +TEEYVDGQF GNLG++LIRCNNVLYLRG  EDE+   AD
Sbjct:   30 YKGYLVSVDSYMNLQLANTEEYVDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD 86          
BLAST of mRNA_H-elongata_contig61006.13642.1 vs. uniprot
Match: A0A6P9F5Z8_JUGRE (Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P9F5Z8_JUGRE)

HSP 1 Score: 90.9 bits (224), Expect = 1.160e-22
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 0
Query:    1 HPGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEEDEDTAKAD 57
            + GFL SVD+YMNL L +TEEY+DGQF GNLG++LIRCNNVLYLRG  EDE+  +AD
Sbjct:   29 YKGFLASVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEEAD 85          
BLAST of mRNA_H-elongata_contig61006.13642.1 vs. uniprot
Match: UPI00201A8FA9 (probable small nuclear ribonucleoprotein F isoform X1 n=2 Tax=Ricinus communis TaxID=3988 RepID=UPI00201A8FA9)

HSP 1 Score: 90.9 bits (224), Expect = 1.490e-22
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 0
Query:    1 HPGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEEDEDTAKAD 57
            + GFL SVD+YMNL L +TEEY+DGQF GNLG++LIRCNNVLYLRG  EDED   AD
Sbjct:   38 YKGFLASVDSYMNLQLGNTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEDIEDAD 94          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61006.13642.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG1_ECTSI1.380e-2892.73Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A176VZF1_MARPO9.930e-2472.41Sm protein F n=3 Tax=Viridiplantae TaxID=33090 Rep... [more]
A0A7J6WA49_THATH3.550e-2371.93Sm protein F n=1 Tax=Thalictrum thalictroides TaxI... [more]
A9S411_PHYPA4.040e-2372.41Sm protein F n=5 Tax=Streptophytina TaxID=131221 R... [more]
A0A835M2E4_9MAGN6.070e-2370.18Sm protein F n=1 Tax=Coptis chinensis TaxID=261450... [more]
A0A7I4DH71_PHYPA7.290e-2372.41Sm protein F n=1 Tax=Physcomitrium patens TaxID=32... [more]
B9RUD7_RICCO8.420e-2374.55Sm protein F n=1 Tax=Ricinus communis TaxID=3988 R... [more]
A0A804J679_MUSAM1.130e-2271.93Sm protein F n=10 Tax=Mesangiospermae TaxID=143718... [more]
A0A6P9F5Z8_JUGRE1.160e-2270.18Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183... [more]
UPI00201A8FA91.490e-2271.93probable small nuclear ribonucleoprotein F isoform... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 3..44
e-value: 2.4E-11
score: 43.1
IPR016487Sm-like protein Lsm6/SmFPIRSFPIRSF006609snRNP_SmFcoord: 1..55
e-value: 2.9E-21
score: 73.1
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 3..53
NoneNo IPR availableGENE3D2.30.30.100coord: 2..58
e-value: 3.7E-17
score: 63.6
NoneNo IPR availablePANTHERPTHR11021:SF5coord: 3..53
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61006contigH-elongata_contig61006:2132..2305 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61006.13642.1mRNA_H-elongata_contig61006.13642.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61006 2132..2305 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61006.13642.1 ID=prot_H-elongata_contig61006.13642.1|Name=mRNA_H-elongata_contig61006.13642.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
HPGFLVSVDTYMNLLLTSTEEYVDGQFAGNLGDVLIRCNNVLYLRGAEED
EDTAKADD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR010920LSM_dom_sf