mRNA_H-elongata_contig60604.13601.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60604.13601.1
Unique NamemRNA_H-elongata_contig60604.13601.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60604.13601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60604contigH-elongata_contig60604:86..3441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size696
Cds size696
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60604.13601.1prot_H-elongata_contig60604.13601.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60604 86..3441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.20106-CDS-H-elongata_contig60604:85..2201622930980.20106-CDS-H-elongata_contig60604:85..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60604 86..220 +
1691679649.2270243-CDS-H-elongata_contig60604:85..2201691679649.2270243-CDS-H-elongata_contig60604:85..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60604 86..220 +
1622930980.2248456-CDS-H-elongata_contig60604:577..6851622930980.2248456-CDS-H-elongata_contig60604:577..685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60604 578..685 +
1691679649.2373095-CDS-H-elongata_contig60604:577..6851691679649.2373095-CDS-H-elongata_contig60604:577..685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60604 578..685 +
1622930980.2421846-CDS-H-elongata_contig60604:926..10401622930980.2421846-CDS-H-elongata_contig60604:926..1040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60604 927..1040 +
1691679649.2467458-CDS-H-elongata_contig60604:926..10401691679649.2467458-CDS-H-elongata_contig60604:926..1040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60604 927..1040 +
1622930980.2614005-CDS-H-elongata_contig60604:2008..21451622930980.2614005-CDS-H-elongata_contig60604:2008..2145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60604 2009..2145 +
1691679649.258118-CDS-H-elongata_contig60604:2008..21451691679649.258118-CDS-H-elongata_contig60604:2008..2145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60604 2009..2145 +
1622930980.2822473-CDS-H-elongata_contig60604:2600..26821622930980.2822473-CDS-H-elongata_contig60604:2600..2682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60604 2601..2682 +
1691679649.2732844-CDS-H-elongata_contig60604:2600..26821691679649.2732844-CDS-H-elongata_contig60604:2600..2682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60604 2601..2682 +
1622930980.3034105-CDS-H-elongata_contig60604:3321..34411622930980.3034105-CDS-H-elongata_contig60604:3321..3441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60604 3322..3441 +
1691679649.2847073-CDS-H-elongata_contig60604:3321..34411691679649.2847073-CDS-H-elongata_contig60604:3321..3441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60604 3322..3441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60604.13601.1

>prot_H-elongata_contig60604.13601.1 ID=prot_H-elongata_contig60604.13601.1|Name=mRNA_H-elongata_contig60604.13601.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp
RWDKATGLLAEVWLAGLKPDSYTYSSAIHACAAAGRWEEAMSLLREMESV
GLGPSVVAYGAAMSALANGKQWERALKLLDEVCSRPKSSEVGPNTVLYGA
AIRACSGAGKWRVGLELLEKMHSADGVRPSLVCFNAALHGLATAGEAKRA
RRLLEAMQRGPRATRPDVYSYNSAIAACGPKGRAAEARELLEDMRRCGTA
PDVFSFNGVMQANVGGGNWADALEARASLLF*
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mRNA from alignment at H-elongata_contig60604:86..3441+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60604.13601.1 ID=mRNA_H-elongata_contig60604.13601.1|Name=mRNA_H-elongata_contig60604.13601.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3356bp|location=Sequence derived from alignment at H-elongata_contig60604:86..3441+ (Himanthalia elongata Himel1 dioecious)
AGGTGGGACAAGGCCACGGGGCTTCTCGCGGAGGTCTGGCTCGCAGGGCT
GAAGCCGGACAGCTACACGTATTCCTCTGCGATTCACGCTTGCGCGGCCG
CGGGGAGGTGGGAGGAAGCCATGAGCCTGCTGAGGGTGAGCGAGGGCGCC
GATCTCACGGCCTCATCTCCTTTCCAATTACTCTGCCCACAACGGTATAA
TGTGCTGAGAAAACACGAATGTGCAGGAAAGAGTCAGCCCCCCCCCTTCC
CCACCCCTTACAAGCTCTAGCCCTTCGCAATAGACACGGTTAATTTACCC
ACCATGCTGTTACGTTTAAGAACTGAGGCGCGTCTACAGCGCGATAGTGA
TCCATGGCTCGTCTCCCCAACCTTCTGACCAGTCACGCGTTTGTCGTCGT
GTGCTTTTCTGCCACCGCCACTGTGCGATCTAACCATGTGTGGCATTTCT
TCCCTGGAACGCCTCCAAATGTTTATTGATTGTCCTGCGAAGGAGATGGA
GTCGGTTGGGCTGGGGCCAAGCGTGGTTGCCTACGGCGCGGCGATGTCTG
CGCTGGCCAATGGGAAGCAGTGGGAGCGCGCGCTTAAGCTGCTCGACGAG
GTAGGCTCAACCCCTTTTCTTCTCAAGCCTTCCACCTCCTGTTGGGTTCT
CAAGCCTTCTACCTCTCGTTGGGTTCAACGGAACGAGAGTGAAACCGATT
GATGGCTAGCATTTTGATATTGTGCTCACTCACGCGACGAAGTTAATCTC
CCCGCCTTCAGAGCTATGTAAACATTCCTGATACGTACATACGTAATACT
TGTGCTGTTTTCAATACGAAACCCACGTCGTCTTCCTCCAGGTGTGCTCA
CGGCCGAAATCGTCGGAGGTGGGCCCCAACACGGTGCTGTATGGTGCAGC
CATCAGGGCTTGCTCGGGGGCGGGAAAGTGGCGAGTCGGCTTGGAGTTGC
TCGAGGTGATGAGGCGGGATATCTTGTGTGCATGTGTGTGTGTGTGTGTG
TGTGTAACTATAATTATTAAGTTGCACATAACCGCGCGTATATGTGTATA
TATGTTGTATGTTTGTTTTGCGCGGTGTAACGGTAATTTACCGCTGCTGG
TGTGCGGATTTGCAAAAATGTATTACTTTCTCCGACACACCGTGGATTTT
CTCCCCCTCTTTTCCGTAGGATGCCATTGGTTTCACCCTTCCCCCCCGTC
CGTCCGGTAAACCAGTGGCATCAAGTACATTCACGCGCACACAAACACAG
TAAACGCATACACATACACATACACATACACACAGTAACGCCTCCGATAC
TCTACTGTACTTGTAGTATACTGTATGGCACATGTCCACTGTACCAACTG
TGGATGTGGAAAAAGAGAGGCGCATAAAAACAAAGGTCATTGGGGTTACC
TGAAAAGGCAACACCCATTGCTCAAGCTACCTTGAGAGGACCACTGACCC
AGTGCCGGTGAACGCTCGGTGGTGAACGTCATTAATACATCAATGCATGG
ATCAATTGCGTGACCTGATAAACTTAGGATCGACCCGATGGCGGTTGACA
GTAGAGATGGACATCGTCGCGGAAAGCGTGAGGAACGGGAGGAGCCTGGA
AGTAAGCGCCAGATTAAGCCTGGGTTAGGATAATAAGCGGACTGACACGG
GACGGGAAGACCGAACCCGTTCTCGCGTGGCCAAATTCTCAGGCGCGAAC
GGGGACAGGGAAAATTTCTTTTCCCTGTTCAGGTGACCACGAGCAGGATT
GGCAACCATGTCCGGTTGATCAATACTAAAGACTATATAGTATATAGTAA
AGGCTATATACTATACTGCTTTATATGATGACCACACACACACACACACA
TACACAAACAAACGGGGGCTCCATTCCCTGATCCCCCCCCCCCCACACAC
ACAACCTGGCCACGAACAAGCAGAAAATGCACTCTGCCGACGGCGTGAGG
CCGTCGCTGGTGTGCTTCAACGCCGCCCTGCACGGCCTGGCCACGGCTGG
GGAGGCCAAGCGTGCAAGGAGGCTGCTGGAGGCCATGCAGCGGGGGCCGC
GCGCGACCAGGTGGGGCTTCCTGTTGCGACCGCTTGTTAATTGGTTGGTG
ATTCCGATGCCTCACGTATCCTGCAGGGATACTTTATTATGATGCCTCCG
CTAAGGGGCGCCTCTTGCTATGCTTGGGTACCAGTACCGATCGATGACCA
GAGTACAAACATAGAAAAGGATGTGTCGGCCTGAGTTAAGAATATTATCG
GAATTTAATGATCTTGCTACTCCCCGAAGGACAAGGGAAGATACTTCAAT
ATGTTTATGCAGCACGTGGGAATGTCGCCCTGATATATACAGGGAAAGGC
GATTTATGCCTCTGACTTTCCCCATCGTGGCTCTTTGAAGTTCCGCCTGA
TGCTTCCCATCCGGGCCTATCCACGAGCTAGTCCCACGAGCTAATAACCC
CGCTGCTCTTCGCCGAGAGCAATGCTCGGGTTAATGCGTCCCTCCTCATG
GTCGTGGCATCACAGGCCCGACGTCTACAGCTATAACTCGGCCATCGCCG
CGTGCGGCCCGAAGGGCAGGGCGGCCGAGGCGAGGGAGTTGTTAGAGGTA
CGAATGTTGAACGTTTTTGCTTGTATTTCTTCGTCAGAGCTGCTATCACC
TGCTCTACAGGGGCATGATCTTAGTTGTTTGATGCCGTACCACATAGGCC
TGGGTCGTACGCGCCGGTATTTATTATCACAGACTGAGTAATGTCCCGGA
TGTAATCACGTGAAAGGATGAAAAGGTGGGTAGCCAGGCATCTCGACAAA
ATAAGACGATTTTTCTTTCGTGGCTGTTGTTCTACGATTGACTACGTACG
ACAACAACCCGGCCTGAACAGCGCTGCACATCGGGAAAGCCCTCGATCGT
TTCTTTTTGAAAACCTTCAAATGTATTGATTGACCTATGTATGCGATTTT
TGTTCCAGGTTTGATTGATCTGCCACTACTGTGTGTGTATCTTTGTTTCG
AAGACATCTTCGTCTCGTTTCTTTGTATATTAATCACCACATGGTGGAAC
ATATTTTGTTTTATCTCTCTCTATTTTTGCATCTATTTATCTTTGTGCAT
ATGGTGTAAGCTGTAGTTCTACTGTGTATCTTCTTGTTTTGTGCTCGCGA
ACATACATTTTGTTTTAAGGGGACCTAAGAAGGCTATTTTGGTTTCTCTT
CTTGTGTGACCTACGACCGATGTTCTAATCTTGCAGGACATGCGACGGTG
CGGCACAGCCCCAGACGTGTTCAGCTTCAACGGTGTGATGCAGGCCAACG
TGGGGGGCGGTAATTGGGCTGACGCTCTCGAGGCACGCGCTTCTCTACTT
TTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig60604:86..3441+

>mRNA_H-elongata_contig60604.13601.1 ID=mRNA_H-elongata_contig60604.13601.1|Name=mRNA_H-elongata_contig60604.13601.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at H-elongata_contig60604:86..3441+ (Himanthalia elongata Himel1 dioecious)
AGGTGGGACAAGGCCACGGGGCTTCTCGCGGAGGTCTGGCTCGCAGGGCT
GAAGCCGGACAGCTACACGTATTCCTCTGCGATTCACGCTTGCGCGGCCG
CGGGGAGGTGGGAGGAAGCCATGAGCCTGCTGAGGAGGTGGGACAAGGCC
ACGGGGCTTCTCGCGGAGGTCTGGCTCGCAGGGCTGAAGCCGGACAGCTA
CACGTATTCCTCTGCGATTCACGCTTGCGCGGCCGCGGGGAGGTGGGAGG
AAGCCATGAGCCTGCTGAGGGAGATGGAGTCGGTTGGGCTGGGGCCAAGC
GTGGTTGCCTACGGCGCGGCGATGTCTGCGCTGGCCAATGGGAAGCAGTG
GGAGCGCGCGCTTAAGCTGCTCGACGAGGAGATGGAGTCGGTTGGGCTGG
GGCCAAGCGTGGTTGCCTACGGCGCGGCGATGTCTGCGCTGGCCAATGGG
AAGCAGTGGGAGCGCGCGCTTAAGCTGCTCGACGAGGTGTGCTCACGGCC
GAAATCGTCGGAGGTGGGCCCCAACACGGTGCTGTATGGTGCAGCCATCA
GGGCTTGCTCGGGGGCGGGAAAGTGGCGAGTCGGCTTGGAGTTGCTCGAG
GTGTGCTCACGGCCGAAATCGTCGGAGGTGGGCCCCAACACGGTGCTGTA
TGGTGCAGCCATCAGGGCTTGCTCGGGGGCGGGAAAGTGGCGAGTCGGCT
TGGAGTTGCTCGAGAAAATGCACTCTGCCGACGGCGTGAGGCCGTCGCTG
GTGTGCTTCAACGCCGCCCTGCACGGCCTGGCCACGGCTGGGGAGGCCAA
GCGTGCAAGGAGGCTGCTGGAGGCCATGCAGCGGGGGCCGCGCGCGACCA
GAAAATGCACTCTGCCGACGGCGTGAGGCCGTCGCTGGTGTGCTTCAACG
CCGCCCTGCACGGCCTGGCCACGGCTGGGGAGGCCAAGCGTGCAAGGAGG
CTGCTGGAGGCCATGCAGCGGGGGCCGCGCGCGACCAGGCCCGACGTCTA
CAGCTATAACTCGGCCATCGCCGCGTGCGGCCCGAAGGGCAGGGCGGCCG
AGGCGAGGGAGTTGTTAGAGGCCCGACGTCTACAGCTATAACTCGGCCAT
CGCCGCGTGCGGCCCGAAGGGCAGGGCGGCCGAGGCGAGGGAGTTGTTAG
AGGACATGCGACGGTGCGGCACAGCCCCAGACGTGTTCAGCTTCAACGGT
GTGATGCAGGCCAACGTGGGGGGCGGTAATTGGGCTGACGCTCTCGAGGC
ACGCGCTTCTCTACTTTTCTGAGACATGCGACGGTGCGGCACAGCCCCAG
ACGTGTTCAGCTTCAACGGTGTGATGCAGGCCAACGTGGGGGGCGGTAAT
TGGGCTGACGCTCTCGAGGCACGCGCTTCTCTACTTTTCTGA
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