mRNA_H-elongata_contig60408.13580.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60408.13580.1
Unique NamemRNA_H-elongata_contig60408.13580.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60408.13580.1 vs. uniprot
Match: A0A6H5KMF3_9PHAE (Hist_deacetyl domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMF3_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 6.020e-12
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   28 RPLHLAAIGGHTGATEALIGAGCDSGLSNLQGNTALHLACSK 153
            RPLHLAA+ GH G T ALI AGCD+  +NL GNTALHLACSK
Sbjct:  350 RPLHLAALAGHVGITRALISAGCDTSFTNLHGNTALHLACSK 391
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BLAST of mRNA_H-elongata_contig60408.13580.1 vs. uniprot
Match: A0A7S2G6G0_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G6G0_9EUKA)

HSP 1 Score: 48.5 bits (114), Expect = 3.710e-5
Identity = 24/44 (54.55%), Postives = 27/44 (61.36%), Query Frame = 1 
Query:   13 TKRRNRPLHLAAIGGHTGATEALIGAGCDSGLSNLQGNTALHLA 144
            T    RPLHLAA GGHTG    L+ +G   G +N  G TALHLA
Sbjct:  165 TNAEERPLHLAAAGGHTGTVRMLLKSGAHPGKTNYLGQTALHLA 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60408.13580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KMF3_9PHAE6.020e-1273.81Hist_deacetyl domain-containing protein n=2 Tax=Ec... [more]
A0A7S2G6G0_9EUKA3.710e-554.55Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60408contigH-elongata_contig60408:348..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue2e-10
Seed eggNOG ortholog2880.D8LR52
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG1343@2759,KOG4177@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930978.253917-CDS-H-elongata_contig60408:347..5001622930978.253917-CDS-H-elongata_contig60408:347..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60408 348..500 -
1691679648.4292986-CDS-H-elongata_contig60408:347..5001691679648.4292986-CDS-H-elongata_contig60408:347..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60408 348..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60408.13580.1prot_H-elongata_contig60408.13580.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60408 348..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60408.13580.1

>prot_H-elongata_contig60408.13580.1 ID=prot_H-elongata_contig60408.13580.1|Name=mRNA_H-elongata_contig60408.13580.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MTRVTKRRNRPLHLAAIGGHTGATEALIGAGCDSGLSNLQGNTALHLACS
K
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mRNA from alignment at H-elongata_contig60408:348..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60408.13580.1 ID=mRNA_H-elongata_contig60408.13580.1|Name=mRNA_H-elongata_contig60408.13580.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig60408:348..500- (Himanthalia elongata Himel1 dioecious)
ATGACTCGTGTAACAAAACGCCGAAACAGGCCGCTTCATCTGGCGGCGAT
CGGGGGTCACACGGGCGCGACGGAGGCTCTGATCGGAGCCGGCTGCGACA
GTGGGCTCAGCAACCTTCAGGGAAACACGGCGCTGCACTTAGCCTGCTCC
AAA
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Coding sequence (CDS) from alignment at H-elongata_contig60408:348..500-

>mRNA_H-elongata_contig60408.13580.1 ID=mRNA_H-elongata_contig60408.13580.1|Name=mRNA_H-elongata_contig60408.13580.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig60408:348..500- (Himanthalia elongata Himel1 dioecious)
ATGACTCGTGTAACAAAACGCCGAAACAGGCCGCTTCATCTGGCGGCGAT
CGGGGGTCACACGGGCGCGACGGAGGCTCTGATCGGAGCCGGCTGCGACA
GTGGGCTCAGCAACCTTCAGGGAAACACGGCGCTGCACTTAGCCTGCTCC
AAAATGACTCGTGTAACAAAACGCCGAAACAGGCCGCTTCATCTGGCGGC
GATCGGGGGTCACACGGGCGCGACGGAGGCTCTGATCGGAGCCGGCTGCG
ACAGTGGGCTCAGCAACCTTCAGGGAAACACGGCGCTGCACTTAGCCTGC
TCCAAA
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