mRNA_H-elongata_contig60282.13568.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60282.13568.1
Unique NamemRNA_H-elongata_contig60282.13568.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60282.13568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60282contigH-elongata_contig60282:612..2408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_000680.1
Exons4
Model size1263
Cds size1263
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60282.13568.1prot_H-elongata_contig60282.13568.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60282 612..2408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.2025604-CDS-H-elongata_contig60282:611..14311622930977.2025604-CDS-H-elongata_contig60282:611..1431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60282 612..1431 -
1691679648.0746264-CDS-H-elongata_contig60282:611..14311691679648.0746264-CDS-H-elongata_contig60282:611..1431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60282 612..1431 -
1622930977.2187319-CDS-H-elongata_contig60282:1569..18441622930977.2187319-CDS-H-elongata_contig60282:1569..1844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60282 1570..1844 -
1691679648.0823798-CDS-H-elongata_contig60282:1569..18441691679648.0823798-CDS-H-elongata_contig60282:1569..1844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60282 1570..1844 -
1622930977.233228-CDS-H-elongata_contig60282:2013..21061622930977.233228-CDS-H-elongata_contig60282:2013..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60282 2014..2106 -
1691679648.090633-CDS-H-elongata_contig60282:2013..21061691679648.090633-CDS-H-elongata_contig60282:2013..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60282 2014..2106 -
1622930977.2520232-CDS-H-elongata_contig60282:2333..24081622930977.2520232-CDS-H-elongata_contig60282:2333..2408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60282 2334..2408 -
1691679648.0990698-CDS-H-elongata_contig60282:2333..24081691679648.0990698-CDS-H-elongata_contig60282:2333..2408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60282 2334..2408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60282.13568.1

>prot_H-elongata_contig60282.13568.1 ID=prot_H-elongata_contig60282.13568.1|Name=mRNA_H-elongata_contig60282.13568.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=421bp
RALHEFEDVKAALHFGRANLAVVRAFVAYRHDTRFTARKKEHERVRRANA
TMIARLASPIRSKIDFNKFEIDFVKSRARFHMAQCDRTVGHTSVLEARSA
RPPYSRSDVAFCEKPHRYRAEEGLTSEVRPSGGTGRVPGRQGFVRQPNVG
NGTFMSRECKRGTELRRRLPGDRPQTSLGLRRVSNHNDLFDARAANPGWG
SRGSMKITRPPSAPERMEGVNWLTYDVERSRNLANQYVDNRDGTAYKRHE
LVGESETQQDLHDTSGGASNQGDDLWYLGRTLLAEAEVIVNGSSKRKPRR
CREINIQCLSLDGLIRQHGQIRKTLRGFVVEASLIYHRNLSRPRGVEGRR
IYGAIGSASATIVAVQQFLRTASIESDSALAPLLGAHKLDDQGNYPELRA
LLGKNGQRSLCQVLLGSSHMV
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mRNA from alignment at H-elongata_contig60282:612..2408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60282.13568.1 ID=mRNA_H-elongata_contig60282.13568.1|Name=mRNA_H-elongata_contig60282.13568.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1797bp|location=Sequence derived from alignment at H-elongata_contig60282:612..2408- (Himanthalia elongata Himel1 dioecious)
AGGGCCCTGCATGAGTTTGAAGACGTTAAGGCAGCACTGCACTTTGGGAG
AGCTAATTTGGCAGTGGTGCGGGCAGTACGCGAAGGCAGGCAAGGATAGC
TACATAAAATTATTGCACTGCGTATTTTGAGTCGTGTGCTTAAAAGTCAC
TACATCCAGGGATCAATCTCGGTAATTTGATGCCGACGATTTAAGCTTTA
AAATGGCTGGCATTGAATCTAACCAGCAATATATTAATGTCAAAAACGAG
TATTTCTGAGAGTTTTTTATAGAGATACGGGTGAAAAGCCGTCGACTCTG
AGTTCGTTGCTTACCGTCACGACACTAGGTTCACGGCAAGGAAAAAAGAA
CACGAGCGTGTTCGGAGGGCGAATGCGACGATGATTGCGCGGCTGGTGAG
TATATAGTAGGACCAACTGAAGCGGTCATGTCGTGGTCAATCAAAGCGCG
TGCATCGACGAAAGATGCGACATCTGTGAAGACAGCAGCGCAAAGGACAA
CGCCGATGCAAGAGCCTTGAAGTGTTCTTCAAACACGCTCTCCTGTTCCT
GTCGACCGTAATAGGCAAGCCCTATCCGGAGCAAAATAGACTTCAACAAA
TTTGAGATCGACTTCGTCAAGAGTCGTGCCCGTTTCCATATGGCTCAGTG
CGATCGCACCGTTGGACATACATCCGTGTTGGAGGCCAGGTCTGCTCGGC
CTCCGTATTCTAGATCTGACGTGGCCTTTTGCGAAAAACCACATCGATAC
AGGGCCGAAGAAGGATTGACCAGCGAGGTGCGCCCGTCAGGAGGTACCGG
GAGAGTTCCTGGGCGGCAAGGGTTTGTTCGCCAACCAAAGTCAAGGCAGC
GGCCGTTCTCCGCGGGTTTTATCCCACGTCGTCCACAGCGTGAGGATAAG
AACCGAAGCACTGGCTACAGAAAAGCTTGGAACAACCAACCTCTTTACGG
CAAGTCTGCGAACTTGGAAAGTGATAGCGTTGGAAACGGAACATTCATGT
CTCGAGAATGTAAAAGGGGAACTGAACTCCGCCGACGTCTGCCGGGAGAT
CGACCACAAACCTCCTTGGGATTGCGTCGGGTTAGCAATCACAACGATCT
GTTCGACGCGCGCGCCGCCAACCCAGGATGGGGGAGCAGGGGTTCGATGA
AAATTACTCGACCTCCATCCGCCCCGGAGAGAATGGAAGGGGTAAACTGG
CTAACGTACGATGTAGAACGTTCAAGAAATCTTGCCAACCAATATGTCGA
TAATCGTGACGGTACAGCGTACAAGCGGCACGAACTGGTCGGGGAGTCGG
AAACGCAGCAAGACTTGCATGACACTTCTGGGGGTGCCTCAAATCAAGGA
GATGACCTCTGGTATCTAGGGCGAACGCTGCTTGCGGAGGCAGAGGTTAT
CGTTAACGGCAGCTCGAAGAGGAAACCCCGCCGTTGCAGAGAGATTAATA
TCCAGTGTCTTAGCCTAGACGGCCTTATAAGGCAGCATGGACAGATACGG
AAGACCCTCCGAGGCTTCGTTGTCGAGGCTTCCCTAATATATCACCGGAA
TCTGTCCCGACCACGTGGGGTAGAAGGCAGGAGAATATATGGCGCAATTG
GCTCTGCGTCCGCCACTATCGTTGCCGTGCAACAATTTTTACGCACAGCT
TCGATCGAAAGCGATTCGGCTCTCGCCCCGCTCCTGGGTGCTCATAAACT
AGATGACCAGGGCAATTACCCCGAGCTTCGAGCACTCCTCGGGAAGAACG
GACAGCGTTCTCTATGCCAGGTCCTGCTCGGAAGCTCTCATATGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig60282:612..2408-

>mRNA_H-elongata_contig60282.13568.1 ID=mRNA_H-elongata_contig60282.13568.1|Name=mRNA_H-elongata_contig60282.13568.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2526bp|location=Sequence derived from alignment at H-elongata_contig60282:612..2408- (Himanthalia elongata Himel1 dioecious)
AGGGCCCTGCATGAGTTTGAAGACGTTAAGGCAGCACTGCACTTTGGGAG
AGCTAATTTGGCAGTGGTGCGGGCAAGGGCCCTGCATGAGTTTGAAGACG
TTAAGGCAGCACTGCACTTTGGGAGAGCTAATTTGGCAGTGGTGCGGGCA
TTCGTTGCTTACCGTCACGACACTAGGTTCACGGCAAGGAAAAAAGAACA
CGAGCGTGTTCGGAGGGCGAATGCGACGATGATTGCGCGGCTGTTCGTTG
CTTACCGTCACGACACTAGGTTCACGGCAAGGAAAAAAGAACACGAGCGT
GTTCGGAGGGCGAATGCGACGATGATTGCGCGGCTGGCAAGCCCTATCCG
GAGCAAAATAGACTTCAACAAATTTGAGATCGACTTCGTCAAGAGTCGTG
CCCGTTTCCATATGGCTCAGTGCGATCGCACCGTTGGACATACATCCGTG
TTGGAGGCCAGGTCTGCTCGGCCTCCGTATTCTAGATCTGACGTGGCCTT
TTGCGAAAAACCACATCGATACAGGGCCGAAGAAGGATTGACCAGCGAGG
TGCGCCCGTCAGGAGGTACCGGGAGAGTTCCTGGGCGGCAAGGGTTTGTT
CGCCAACCAAAGCAAGCCCTATCCGGAGCAAAATAGACTTCAACAAATTT
GAGATCGACTTCGTCAAGAGTCGTGCCCGTTTCCATATGGCTCAGTGCGA
TCGCACCGTTGGACATACATCCGTGTTGGAGGCCAGGTCTGCTCGGCCTC
CGTATTCTAGATCTGACGTGGCCTTTTGCGAAAAACCACATCGATACAGG
GCCGAAGAAGGATTGACCAGCGAGGTGCGCCCGTCAGGAGGTACCGGGAG
AGTTCCTGGGCGGCAAGGGTTTGTTCGCCAACCAAACGTTGGAAACGGAA
CATTCATGTCTCGAGAATGTAAAAGGGGAACTGAACTCCGCCGACGTCTG
CCGGGAGATCGACCACAAACCTCCTTGGGATTGCGTCGGGTTAGCAATCA
CAACGATCTGTTCGACGCGCGCGCCGCCAACCCAGGATGGGGGAGCAGGG
GTTCGATGAAAATTACTCGACCTCCATCCGCCCCGGAGAGAATGGAAGGG
GTAAACTGGCTAACGTACGATGTAGAACGTTCAAGAAATCTTGCCAACCA
ATATGTCGATAATCGTGACGGTACAGCGTACAAGCGGCACGAACTGGTCG
GGGAGTCGGAAACGCAGCAAGACTTGCATGACACTTCTGGGGGTGCCTCA
AATCAAGGAGATGACCTCTGGTATCTAGGGCGAACGCTGCTTGCGGAGGC
AGAGGTTATCGTTAACGGCAGCTCGAAGAGGAAACCCCGCCGTTGCAGAG
AGATTAATATCCAGTGTCTTAGCCTAGACGGCCTTATAAGGCAGCATGGA
CAGATACGGAAGACCCTCCGAGGCTTCGTTGTCGAGGCTTCCCTAATATA
TCACCGGAATCTGTCCCGACCACGTGGGGTAGAAGGCAGGAGAATATATG
GCGCAATTGGCTCTGCGTCCGCCACTATCGTTGCCGTGCAACAATTTTTA
CGCACAGCTTCGATCGAAAGCGATTCGGCTCTCGCCCCGCTCCTGGGTGC
TCATAAACTAGATGACCAGGGCAATTACCCCGAGCTTCGAGCACTCCTCG
GGAAGAACGGACAGCGTTCTCTATGCCAGGTCCTGCTCGGAAGCTCTCAT
ATGGTCCGTTGGAAACGGAACATTCATGTCTCGAGAATGTAAAAGGGGAA
CTGAACTCCGCCGACGTCTGCCGGGAGATCGACCACAAACCTCCTTGGGA
TTGCGTCGGGTTAGCAATCACAACGATCTGTTCGACGCGCGCGCCGCCAA
CCCAGGATGGGGGAGCAGGGGTTCGATGAAAATTACTCGACCTCCATCCG
CCCCGGAGAGAATGGAAGGGGTAAACTGGCTAACGTACGATGTAGAACGT
TCAAGAAATCTTGCCAACCAATATGTCGATAATCGTGACGGTACAGCGTA
CAAGCGGCACGAACTGGTCGGGGAGTCGGAAACGCAGCAAGACTTGCATG
ACACTTCTGGGGGTGCCTCAAATCAAGGAGATGACCTCTGGTATCTAGGG
CGAACGCTGCTTGCGGAGGCAGAGGTTATCGTTAACGGCAGCTCGAAGAG
GAAACCCCGCCGTTGCAGAGAGATTAATATCCAGTGTCTTAGCCTAGACG
GCCTTATAAGGCAGCATGGACAGATACGGAAGACCCTCCGAGGCTTCGTT
GTCGAGGCTTCCCTAATATATCACCGGAATCTGTCCCGACCACGTGGGGT
AGAAGGCAGGAGAATATATGGCGCAATTGGCTCTGCGTCCGCCACTATCG
TTGCCGTGCAACAATTTTTACGCACAGCTTCGATCGAAAGCGATTCGGCT
CTCGCCCCGCTCCTGGGTGCTCATAAACTAGATGACCAGGGCAATTACCC
CGAGCTTCGAGCACTCCTCGGGAAGAACGGACAGCGTTCTCTATGCCAGG
TCCTGCTCGGAAGCTCTCATATGGTC
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